HEADER PROTON TRANSPORT 02-JUL-19 6S6C TITLE GROUND STATE STRUCTURE OF ARCHAERHODOPSIN-3 AT 100K COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARCHAERHODOPSIN-3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AR 3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALORUBRUM SODOMENSE; SOURCE 3 ORGANISM_TAXID: 35743; SOURCE 4 VARIANT: RD-26; SOURCE 5 ATCC: 33755; SOURCE 6 TISSUE: MEMBRANE KEYWDS MEMBRANE PROTEIN, RHODOPSIN, ARCHAERHODOPSIN, RETINAL, LCP, KEYWDS 2 SYNCHROTRON, CRYO, PROTON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR I.MORAES,P.J.JUDGE,D.AXFORD,T.O.C.KWAN,J.F.BADA JUAREZ,J.VINALS, AUTHOR 2 A.WATTS REVDAT 3 24-JAN-24 6S6C 1 REMARK REVDAT 2 10-FEB-21 6S6C 1 JRNL LINK REVDAT 1 22-JUL-20 6S6C 0 JRNL AUTH J.F.BADA JUAREZ,P.J.JUDGE,S.ADAM,D.AXFORD,J.VINALS,J.BIRCH, JRNL AUTH 2 T.O.C.KWAN,K.K.HOI,H.Y.YEN,A.VIAL,P.E.MILHIET,C.V.ROBINSON, JRNL AUTH 3 I.SCHAPIRO,I.MORAES,A.WATTS JRNL TITL STRUCTURES OF THE ARCHAERHODOPSIN-3 TRANSPORTER REVEAL THAT JRNL TITL 2 DISORDERING OF INTERNAL WATER NETWORKS UNDERPINS RECEPTOR JRNL TITL 3 SENSITIZATION. JRNL REF NAT COMMUN V. 12 629 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 33504778 JRNL DOI 10.1038/S41467-020-20596-0 REMARK 2 REMARK 2 RESOLUTION. 1.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0232 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 93126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6778 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 352 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1826 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 165 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.15000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.030 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.613 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.982 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2222 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2376 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3016 ; 1.205 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5465 ; 0.419 ; 1.547 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 294 ; 4.579 ; 5.017 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;29.350 ;18.261 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 327 ;11.918 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;19.610 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 288 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2389 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 483 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4598 ; 1.023 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 54 ;20.072 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4577 ;10.012 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6S6C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96862 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.10.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98595 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.070 REMARK 200 RESOLUTION RANGE LOW (A) : 52.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 22.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 15.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 1UAZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES PH 5.5, 33% PEG 600, 150MM REMARK 280 NA CHLORIDE, 150MM CA CHLORIDE, LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.33450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.09650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.67850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.09650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.33450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.67850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 47 CD CE NZ REMARK 470 ARG A 50 NE CZ NH1 NH2 REMARK 470 GLU A 78 CD OE1 OE2 REMARK 470 GLU A 84 CG CD OE1 OE2 REMARK 470 ARG A 237 CZ NH1 NH2 REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 171 NZ REMARK 480 ARG A 237 NE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 164 -79.37 -116.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 D12 A 307 REMARK 610 DD9 A 309 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 713 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD2 REMARK 620 2 ASP A 46 OD1 27.1 REMARK 620 3 ASP A 46 OD2 25.9 1.4 REMARK 620 4 ASP A 48 OD2 23.3 4.8 3.4 REMARK 620 5 LEU A 240 O 26.8 4.1 3.5 3.7 REMARK 620 6 HOH A 586 O 24.1 3.1 2.0 2.9 4.9 REMARK 620 7 HOH A 589 O 24.6 4.2 2.9 1.4 2.3 3.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 714 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 11 OD1 REMARK 620 2 ASP A 15 OD1 76.5 REMARK 620 3 THR A 20 OG1 123.2 142.3 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RET A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R16 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R16 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R16 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R16 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D12 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R16 A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DD9 A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DD9 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DD9 A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DD9 A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue R16 A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 717 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6GUX RELATED DB: PDB REMARK 900 RELATED ID: 6GUZ RELATED DB: PDB REMARK 900 RELATED ID: 6S63 RELATED DB: PDB DBREF 6S6C A 7 247 UNP P96787 BACR3_HALSD 7 247 SEQADV 6S6C PCA A 7 UNP P96787 GLN 7 MODIFIED RESIDUE SEQRES 1 A 241 PCA ALA GLY TYR ASP LEU LEU GLY ASP GLY ARG PRO GLU SEQRES 2 A 241 THR LEU TRP LEU GLY ILE GLY THR LEU LEU MET LEU ILE SEQRES 3 A 241 GLY THR PHE TYR PHE LEU VAL ARG GLY TRP GLY VAL THR SEQRES 4 A 241 ASP LYS ASP ALA ARG GLU TYR TYR ALA VAL THR ILE LEU SEQRES 5 A 241 VAL PRO GLY ILE ALA SER ALA ALA TYR LEU SER MET PHE SEQRES 6 A 241 PHE GLY ILE GLY LEU THR GLU VAL THR VAL GLY GLY GLU SEQRES 7 A 241 MET LEU ASP ILE TYR TYR ALA ARG TYR ALA ASP TRP LEU SEQRES 8 A 241 PHE THR THR PRO LEU LEU LEU LEU ASP LEU ALA LEU LEU SEQRES 9 A 241 ALA LYS VAL ASP ARG VAL THR ILE GLY THR LEU VAL GLY SEQRES 10 A 241 VAL ASP ALA LEU MET ILE VAL THR GLY LEU ILE GLY ALA SEQRES 11 A 241 LEU SER HIS THR ALA ILE ALA ARG TYR SER TRP TRP LEU SEQRES 12 A 241 PHE SER THR ILE CYS MET ILE VAL VAL LEU TYR PHE LEU SEQRES 13 A 241 ALA THR SER LEU ARG SER ALA ALA LYS GLU ARG GLY PRO SEQRES 14 A 241 GLU VAL ALA SER THR PHE ASN THR LEU THR ALA LEU VAL SEQRES 15 A 241 LEU VAL LEU TRP THR ALA TYR PRO ILE LEU TRP ILE ILE SEQRES 16 A 241 GLY THR GLU GLY ALA GLY VAL VAL GLY LEU GLY ILE GLU SEQRES 17 A 241 THR LEU LEU PHE MET VAL LEU ASP VAL THR ALA LYS VAL SEQRES 18 A 241 GLY PHE GLY PHE ILE LEU LEU ARG SER ARG ALA ILE LEU SEQRES 19 A 241 GLY ASP THR GLU ALA PRO GLU HET PCA A 7 13 HET RET A 300 96 HET R16 A 302 50 HET R16 A 303 50 HET R16 A 304 50 HET R16 A 305 50 HET D12 A 307 27 HET R16 A 308 50 HET DD9 A 309 50 HET DD9 A 310 29 HET DD9 A 311 29 HET DD9 A 312 29 HET R16 A 314 50 HET CA A 713 1 HET NA A 714 1 HET CL A 715 1 HET CL A 716 1 HET CL A 717 1 HETNAM PCA PYROGLUTAMIC ACID HETNAM RET RETINAL HETNAM R16 HEXADECANE HETNAM D12 DODECANE HETNAM DD9 NONANE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 1 PCA C5 H7 N O3 FORMUL 2 RET C20 H28 O FORMUL 3 R16 6(C16 H34) FORMUL 7 D12 C12 H26 FORMUL 9 DD9 4(C9 H20) FORMUL 14 CA CA 2+ FORMUL 15 NA NA 1+ FORMUL 16 CL 3(CL 1-) FORMUL 19 HOH *86(H2 O) HELIX 1 AA1 GLU A 19 GLY A 43 1 25 HELIX 2 AA2 ASP A 46 GLY A 73 1 28 HELIX 3 AA3 TYR A 90 LYS A 112 1 23 HELIX 4 AA4 ASP A 114 LEU A 137 1 24 HELIX 5 AA5 THR A 140 THR A 164 1 25 HELIX 6 AA6 THR A 164 GLU A 172 1 9 HELIX 7 AA7 GLY A 174 GLY A 202 1 29 HELIX 8 AA8 GLY A 210 ARG A 235 1 26 HELIX 9 AA9 SER A 236 GLY A 241 5 6 SHEET 1 AA1 2 LEU A 76 VAL A 81 0 SHEET 2 AA1 2 GLU A 84 TYR A 89 -1 O GLU A 84 N VAL A 81 LINK C PCA A 7 N ALA A 8 1555 1555 1.33 LINK NZ ALYS A 226 C15ARET A 300 1555 1555 1.27 LINK NZ BLYS A 226 C15BRET A 300 1555 1555 1.17 LINK OD2 ASP A 11 CA CA A 713 1555 2555 2.35 LINK OD1 ASP A 11 NA NA A 714 1555 1555 2.65 LINK OD1 ASP A 15 NA NA A 714 1555 1555 2.74 LINK OG1 THR A 20 NA NA A 714 1555 1555 2.72 LINK OD1 ASP A 46 CA CA A 713 1555 1555 2.44 LINK OD2 ASP A 46 CA CA A 713 1555 1555 2.70 LINK OD2 ASP A 48 CA CA A 713 1555 1555 2.37 LINK O LEU A 240 CA CA A 713 1555 1555 2.33 LINK O HOH A 586 CA CA A 713 1555 1555 2.39 LINK O HOH A 589 CA CA A 713 1555 1555 2.42 SITE 1 AC1 14 TRP A 96 THR A 99 THR A 100 MET A 128 SITE 2 AC1 14 TRP A 148 SER A 151 THR A 152 TRP A 192 SITE 3 AC1 14 TYR A 195 PRO A 196 TRP A 199 ASP A 222 SITE 4 AC1 14 ALA A 225 LYS A 226 SITE 1 AC2 4 THR A 120 GLY A 123 VAL A 223 R16 A 305 SITE 1 AC3 5 SER A 69 ASP A 95 ILE A 156 THR A 193 SITE 2 AC3 5 DD9 A 310 SITE 1 AC4 2 LEU A 133 VAL A 227 SITE 1 AC5 4 THR A 117 THR A 120 VAL A 124 R16 A 302 SITE 1 AC6 2 ILE A 156 PHE A 161 SITE 1 AC7 2 SER A 146 PHE A 150 SITE 1 AC8 4 GLY A 24 LEU A 28 LEU A 68 PHE A 71 SITE 1 AC9 1 R16 A 303 SITE 1 AD1 1 TYR A 10 SITE 1 AD2 1 GLY A 61 SITE 1 AD3 2 SER A 146 LEU A 149 SITE 1 AD4 6 ASP A 11 ASP A 46 ASP A 48 LEU A 240 SITE 2 AD4 6 HOH A 586 HOH A 589 SITE 1 AD5 6 ASP A 11 LEU A 12 LEU A 13 ASP A 15 SITE 2 AD5 6 ARG A 17 THR A 20 SITE 1 AD6 4 ALA A 8 GLY A 210 GLY A 212 ILE A 213 SITE 1 AD7 4 LYS A 47 ARG A 115 HOH A 575 HOH A 586 SITE 1 AD8 3 THR A 45 ASP A 46 HOH A 560 CRYST1 44.669 47.357 104.193 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022387 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009598 0.00000 HETATM 1 N PCA A 7 4.856 -7.332 -6.809 0.80 21.48 N ANISOU 1 N PCA A 7 4100 2749 1309 558 295 40 N HETATM 2 CA PCA A 7 4.799 -7.687 -8.208 1.00 19.92 C ANISOU 2 CA PCA A 7 3287 2728 1552 202 649 -353 C HETATM 3 CB PCA A 7 4.960 -6.333 -8.918 1.00 20.28 C ANISOU 3 CB PCA A 7 3311 2631 1761 155 -104 -301 C HETATM 4 CG PCA A 7 4.645 -5.306 -7.862 1.00 20.13 C ANISOU 4 CG PCA A 7 3515 2697 1436 125 -425 -276 C HETATM 5 CD PCA A 7 4.914 -6.022 -6.573 1.00 23.03 C ANISOU 5 CD PCA A 7 4697 2980 1072 407 11 -386 C HETATM 6 OE PCA A 7 5.110 -5.498 -5.474 0.50 25.62 O ANISOU 6 OE PCA A 7 4933 3758 1044 1454 -63 -798 O HETATM 7 C PCA A 7 5.918 -8.650 -8.594 1.00 17.70 C ANISOU 7 C PCA A 7 2969 2443 1312 29 584 40 C HETATM 8 O PCA A 7 7.047 -8.549 -8.109 1.00 18.56 O ANISOU 8 O PCA A 7 2956 2207 1889 -51 684 9 O HETATM 9 HA PCA A 7 3.910 -8.078 -8.421 1.00 19.61 H ANISOU 9 HA PCA A 7 3330 2628 1493 234 435 -153 H HETATM 10 HB2 PCA A 7 4.339 -6.256 -9.668 0.80 19.80 H ANISOU 10 HB2 PCA A 7 3298 2612 1613 164 -4 -281 H HETATM 11 HB3 PCA A 7 5.876 -6.219 -9.253 1.00 20.20 H ANISOU 11 HB3 PCA A 7 3381 2652 1638 165 -12 -297 H HETATM 12 HG2 PCA A 7 3.710 -5.022 -7.910 1.00 20.33 H ANISOU 12 HG2 PCA A 7 3558 2710 1454 207 -256 -301 H HETATM 13 HG3 PCA A 7 5.221 -4.521 -7.947 1.00 20.31 H ANISOU 13 HG3 PCA A 7 3603 2661 1453 147 -242 -292 H