data_6S7D # _entry.id 6S7D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.324 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6S7D WWPDB D_1292103206 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6S7D _pdbx_database_status.recvd_initial_deposition_date 2019-07-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Conlon, P.F.' 1 ? 'Steinhogl, J.' 2 ? 'Vyle, J.S.' 3 ? 'Hall, J.P.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-6520 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 10948 _citation.page_last 10957 _citation.title ;Solid-phase synthesis and structural characterisation of phosphoroselenolate-modified DNA: a backbone analogue which does not impose conformational bias and facilitates SAD X-ray crystallography. ; _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/c9sc04098f _citation.pdbx_database_id_PubMed 32190252 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Conlon, P.F.' 1 ? primary 'Eguaogie, O.' 2 ? primary 'Wilson, J.J.' 3 ? primary 'Sweet, J.S.T.' 4 ? primary 'Steinhoegl, J.' 5 ? primary 'Englert, K.' 6 ? primary 'Hancox, O.G.A.' 7 ? primary 'Law, C.J.' 8 ? primary 'Allman, S.A.' 9 ? primary 'Tucker, J.H.R.' 10 ? primary 'Hall, J.P.' 11 ? primary 'Vyle, J.S.' 12 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6S7D _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.642 _cell.length_a_esd ? _cell.length_b 38.642 _cell.length_b_esd ? _cell.length_c 79.307 _cell.length_c_esd ? _cell.volume 102553.928 _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S7D _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ;P 31 2" ; _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*(XCI)P*CP*CP*CP*GP*GP*GP*AP*C)-3') ; 3092.955 2 ? ? ? ? 2 non-polymer syn 'BARIUM ION' 137.327 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 4 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 5 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 6 water nat water 18.015 60 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(XCI)(DC)(DC)(DC)(DG)(DG)(DG)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GXCCCGGGAC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 XCI n 1 3 DC n 1 4 DC n 1 5 DC n 1 6 DG n 1 7 DG n 1 8 DG n 1 9 DA n 1 10 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6S7D _struct_ref.pdbx_db_accession 6S7D _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6S7D A 1 ? 10 ? 6S7D 1 ? 10 ? 1 10 2 1 6S7D B 1 ? 10 ? 6S7D 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 XCI non-polymer . '[(2~{S},3~{S},5~{R})-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methylselanylphosphonous acid' ? 'C10 H15 N2 O6 P Se' 369.170 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6S7D _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.14 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;The crystallization solution contained 1 uL of 2 mM oligonucleotide and 6 uL of a solution containing 10% (v/v) 2-methyl-2,4-pentanediol, 40 mM Na-cacodylate pH 6, 12 mM Spermine tetra-HCl, 80 mM NaCl and 20 mM BaCl2. This was equilibrated against 100 uL of 35% (v/v) 2-methyl-2,4-pentanediol. Crystals grew in approximately 1-2 weeks and were grown using the sitting-drop method at 291 K. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-02-18 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Dual Si(111)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9596 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I03' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9596 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I03 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6S7D _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 25.57 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 12548 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F -3 _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.06 _reflns.pdbx_Rpim_I_all 0.032 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.47 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 625 _reflns_shell.percent_possible_all 98.7 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.556 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.674 _reflns_shell.pdbx_Rpim_I_all 0.375 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.741 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 25.54 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6S7D _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.45 _refine.ls_d_res_low 25.57 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 12530 _refine.ls_number_reflns_R_free 579 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.31 _refine.ls_percent_reflns_R_free 4.62 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1919 _refine.ls_R_factor_R_free 0.2366 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1849 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.79 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.2935 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.45 _refine_hist.d_res_low 25.57 _refine_hist.number_atoms_solvent 60 _refine_hist.number_atoms_total 483 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 404 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0089 ? 463 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.9357 ? 698 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0785 ? 76 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0092 ? 20 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 20.1052 ? 197 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.45 1.59 . . 123 2953 95.01 . . . 0.3332 . 0.2729 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.59 1.82 . . 133 2930 94.52 . . . 0.2518 . 0.2340 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.82 2.28 . . 166 2932 93.47 . . . 0.2669 . 0.2150 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.28 7.41 . . 149 3033 92.72 . . . 0.2145 . 0.1613 . . . . . . . . . . # _struct.entry_id 6S7D _struct.title 'Self-complementary duplex DNA containing an internucleoside phosphoroselenolate' _struct.pdbx_descriptor ;DNA (5'-D(*GP*(XCI)P*CP*CP*CP*GP*GP*GP*AP*C)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6S7D _struct_keywords.text 'Modified Phasing Duplex Phosphoroselenolate, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 2 ? H N N 3 ? I N N 6 ? J N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale one ? A DG 1 "O3'" ? ? ? 1_555 A XCI 2 P ? ? A DG 1 A XCI 2 1_555 ? ? ? ? ? ? ? 1.653 ? covale2 covale one ? A XCI 2 "O3'" ? ? ? 1_555 A DC 3 P ? ? A XCI 2 A DC 3 1_555 ? ? ? ? ? ? ? 1.609 ? metalc1 metalc ? ? A DG 7 O6 ? ? ? 1_555 C BA . BA ? ? A DG 7 A BA 101 1_555 ? ? ? ? ? ? ? 3.092 ? metalc2 metalc ? ? A DG 8 O6 ? ? ? 1_555 C BA . BA ? ? A DG 8 A BA 101 1_555 ? ? ? ? ? ? ? 2.864 ? covale3 covale one ? B DG 1 "O3'" ? ? ? 1_555 B XCI 2 P ? ? B DG 1 B XCI 2 1_555 ? ? ? ? ? ? ? 1.622 ? covale4 covale one ? B XCI 2 "O3'" ? ? ? 1_555 B DC 3 P ? ? B XCI 2 B DC 3 1_555 ? ? ? ? ? ? ? 1.615 ? metalc3 metalc ? ? B DG 7 O6 ? ? ? 1_555 G BA . BA ? ? B DG 7 B BA 102 1_555 ? ? ? ? ? ? ? 3.009 ? metalc4 metalc ? ? B DG 8 O6 ? ? ? 1_555 G BA . BA ? ? B DG 8 B BA 102 1_555 ? ? ? ? ? ? ? 2.676 ? metalc5 metalc ? ? C BA . BA ? ? ? 1_555 I HOH . O ? ? A BA 101 A HOH 211 1_555 ? ? ? ? ? ? ? 2.700 ? metalc6 metalc ? ? C BA . BA ? ? ? 1_555 I HOH . O A ? A BA 101 A HOH 210 1_555 ? ? ? ? ? ? ? 2.806 ? metalc7 metalc ? ? C BA . BA ? ? ? 1_555 I HOH . O B ? A BA 101 A HOH 210 1_555 ? ? ? ? ? ? ? 2.923 ? metalc8 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 102 A HOH 206 1_555 ? ? ? ? ? ? ? 2.958 ? metalc9 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O A ? A NA 102 A HOH 210 1_555 ? ? ? ? ? ? ? 3.132 ? metalc10 metalc ? ? D NA . NA ? ? ? 1_555 I HOH . O B ? A NA 102 A HOH 210 1_555 ? ? ? ? ? ? ? 2.431 ? metalc11 metalc ? ? G BA . BA ? ? ? 1_555 I HOH . O ? ? B BA 102 A HOH 203 1_555 ? ? ? ? ? ? ? 2.874 ? metalc12 metalc ? ? G BA . BA ? ? ? 1_555 J HOH . O ? ? B BA 102 B HOH 215 1_555 ? ? ? ? ? ? ? 2.742 ? metalc13 metalc ? ? G BA . BA ? ? ? 1_555 J HOH . O ? ? B BA 102 B HOH 203 1_555 ? ? ? ? ? ? ? 2.977 ? metalc14 metalc ? ? G BA . BA ? ? ? 1_555 J HOH . O ? ? B BA 102 B HOH 208 1_555 ? ? ? ? ? ? ? 2.759 ? metalc15 metalc ? ? G BA . BA ? ? ? 1_555 J HOH . O ? ? B BA 102 B HOH 217 1_555 ? ? ? ? ? ? ? 2.971 ? metalc16 metalc ? ? H NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 103 B HOH 216 1_555 ? ? ? ? ? ? ? 2.877 ? metalc17 metalc ? ? H NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 103 B HOH 222 1_555 ? ? ? ? ? ? ? 2.600 ? metalc18 metalc ? ? C BA . BA ? ? ? 1_555 J HOH . O ? ? A BA 101 B HOH 236 4_545 ? ? ? ? ? ? ? 2.862 ? metalc19 metalc ? ? C BA . BA ? ? ? 1_555 J HOH . O ? ? A BA 101 B HOH 237 4_545 ? ? ? ? ? ? ? 2.771 ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 1 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 1 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 1 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 8 N1 ? ? A DC 3 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 8 O6 ? ? A DC 3 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 8 N2 ? ? A DC 3 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 4 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 4 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 4 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 5 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 5 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 5 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 6 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 6 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 6 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A DG 7 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 7 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DG 7 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 7 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DG 7 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 7 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 8 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 8 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 8 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DG 1 O6 ? ? A DA 9 B DG 1 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? hydrog23 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 10 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 10 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 10 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BA 101 ? 6 'binding site for residue BA A 101' AC2 Software A NA 102 ? 4 'binding site for residue NA A 102' AC3 Software A CL 103 ? 3 'binding site for residue CL A 103' AC4 Software B SPM 101 ? 6 'binding site for residue SPM B 101' AC5 Software B BA 102 ? 7 'binding site for residue BA B 102' AC6 Software B NA 103 ? 3 'binding site for residue NA B 103' AC7 Software B DG 1 ? 12 'binding site for Di-nucleotide DG B 1 and XCI B 2' AC8 Software B XCI 2 ? 12 'binding site for Di-nucleotide XCI B 2 and DC B 3' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DG A 7 ? DG A 7 . ? 1_555 ? 2 AC1 6 DG A 8 ? DG A 8 . ? 1_555 ? 3 AC1 6 HOH I . ? HOH A 210 . ? 1_555 ? 4 AC1 6 HOH I . ? HOH A 211 . ? 1_555 ? 5 AC1 6 HOH J . ? HOH B 236 . ? 4_545 ? 6 AC1 6 HOH J . ? HOH B 237 . ? 4_545 ? 7 AC2 4 DC A 5 ? DC A 5 . ? 1_555 ? 8 AC2 4 DG A 6 ? DG A 6 . ? 1_555 ? 9 AC2 4 HOH I . ? HOH A 206 . ? 1_555 ? 10 AC2 4 HOH I . ? HOH A 210 . ? 1_555 ? 11 AC3 3 HOH I . ? HOH A 210 . ? 1_555 ? 12 AC3 3 HOH I . ? HOH A 219 . ? 1_555 ? 13 AC3 3 HOH I . ? HOH A 221 . ? 1_555 ? 14 AC4 6 XCI A 2 ? XCI A 2 . ? 1_555 ? 15 AC4 6 DC A 3 ? DC A 3 . ? 1_555 ? 16 AC4 6 DC A 4 ? DC A 4 . ? 1_555 ? 17 AC4 6 XCI B 2 ? XCI B 2 . ? 1_555 ? 18 AC4 6 DC B 3 ? DC B 3 . ? 1_555 ? 19 AC4 6 HOH J . ? HOH B 212 . ? 1_555 ? 20 AC5 7 HOH I . ? HOH A 203 . ? 1_555 ? 21 AC5 7 DG B 7 ? DG B 7 . ? 1_555 ? 22 AC5 7 DG B 8 ? DG B 8 . ? 1_555 ? 23 AC5 7 HOH J . ? HOH B 203 . ? 1_555 ? 24 AC5 7 HOH J . ? HOH B 208 . ? 1_555 ? 25 AC5 7 HOH J . ? HOH B 215 . ? 1_555 ? 26 AC5 7 HOH J . ? HOH B 217 . ? 1_555 ? 27 AC6 3 DA B 9 ? DA B 9 . ? 1_555 ? 28 AC6 3 HOH J . ? HOH B 216 . ? 1_555 ? 29 AC6 3 HOH J . ? HOH B 222 . ? 1_555 ? 30 AC7 12 DG A 6 ? DG A 6 . ? 4_545 ? 31 AC7 12 DG A 7 ? DG A 7 . ? 4_545 ? 32 AC7 12 DG A 8 ? DG A 8 . ? 4_545 ? 33 AC7 12 DA A 9 ? DA A 9 . ? 1_555 ? 34 AC7 12 DC A 10 ? DC A 10 . ? 1_555 ? 35 AC7 12 DC B 3 ? DC B 3 . ? 1_555 ? 36 AC7 12 DC B 5 ? DC B 5 . ? 4_545 ? 37 AC7 12 DG B 6 ? DG B 6 . ? 4_545 ? 38 AC7 12 DC B 10 ? DC B 10 . ? 3_654 ? 39 AC7 12 SPM F . ? SPM B 101 . ? 1_555 ? 40 AC7 12 HOH J . ? HOH B 207 . ? 4_545 ? 41 AC7 12 HOH J . ? HOH B 237 . ? 4_545 ? 42 AC8 12 DG A 7 ? DG A 7 . ? 4_545 ? 43 AC8 12 DG A 8 ? DG A 8 . ? 4_545 ? 44 AC8 12 DG A 8 ? DG A 8 . ? 1_555 ? 45 AC8 12 DA A 9 ? DA A 9 . ? 1_555 ? 46 AC8 12 DG B 1 ? DG B 1 . ? 1_555 ? 47 AC8 12 DC B 4 ? DC B 4 . ? 1_555 ? 48 AC8 12 DC B 10 ? DC B 10 . ? 3_654 ? 49 AC8 12 SPM F . ? SPM B 101 . ? 1_555 ? 50 AC8 12 HOH J . ? HOH B 201 . ? 1_555 ? 51 AC8 12 HOH J . ? HOH B 211 . ? 1_555 ? 52 AC8 12 HOH J . ? HOH B 218 . ? 1_555 ? 53 AC8 12 HOH J . ? HOH B 237 . ? 4_545 ? # _atom_sites.entry_id 6S7D _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.025879 _atom_sites.fract_transf_matrix[1][2] 0.014941 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029882 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012609 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BA ? ? 46.69444 9.00985 ? ? 2.07616 47.04031 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CL ? ? 9.50761 7.44341 ? ? 1.04373 23.83732 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? SE ? ? 26.02326 7.89457 ? ? 1.54240 29.12501 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 XCI 2 2 2 XCI XCI A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DC 10 10 10 DC DC A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 XCI 2 2 2 XCI XCI B . n B 1 3 DC 3 3 3 DC DC B . n B 1 4 DC 4 4 4 DC DC B . n B 1 5 DC 5 5 5 DC DC B . n B 1 6 DG 6 6 6 DG DG B . n B 1 7 DG 7 7 7 DG DG B . n B 1 8 DG 8 8 8 DG DG B . n B 1 9 DA 9 9 9 DA DA B . n B 1 10 DC 10 10 10 DC DC B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BA 1 101 1 BA BA A . D 3 NA 1 102 3 NA NA A . E 4 CL 1 103 5 CL CL A . F 5 SPM 1 101 1 SPM SPM B . G 2 BA 1 102 2 BA BA B . H 3 NA 1 103 4 NA NA B . I 6 HOH 1 201 25 HOH HOH A . I 6 HOH 2 202 28 HOH HOH A . I 6 HOH 3 203 45 HOH HOH A . I 6 HOH 4 204 47 HOH HOH A . I 6 HOH 5 205 37 HOH HOH A . I 6 HOH 6 206 5 HOH HOH A . I 6 HOH 7 207 19 HOH HOH A . I 6 HOH 8 208 12 HOH HOH A . I 6 HOH 9 209 30 HOH HOH A . I 6 HOH 10 210 6 HOH HOH A . I 6 HOH 11 211 15 HOH HOH A . I 6 HOH 12 212 60 HOH HOH A . I 6 HOH 13 213 49 HOH HOH A . I 6 HOH 14 214 36 HOH HOH A . I 6 HOH 15 215 56 HOH HOH A . I 6 HOH 16 216 39 HOH HOH A . I 6 HOH 17 217 21 HOH HOH A . I 6 HOH 18 218 18 HOH HOH A . I 6 HOH 19 219 3 HOH HOH A . I 6 HOH 20 220 2 HOH HOH A . I 6 HOH 21 221 41 HOH HOH A . I 6 HOH 22 222 24 HOH HOH A . I 6 HOH 23 223 13 HOH HOH A . J 6 HOH 1 201 9 HOH HOH B . J 6 HOH 2 202 11 HOH HOH B . J 6 HOH 3 203 17 HOH HOH B . J 6 HOH 4 204 35 HOH HOH B . J 6 HOH 5 205 1 HOH HOH B . J 6 HOH 6 206 34 HOH HOH B . J 6 HOH 7 207 16 HOH HOH B . J 6 HOH 8 208 29 HOH HOH B . J 6 HOH 9 209 26 HOH HOH B . J 6 HOH 10 210 64 HOH HOH B . J 6 HOH 11 211 53 HOH HOH B . J 6 HOH 12 212 54 HOH HOH B . J 6 HOH 13 213 46 HOH HOH B . J 6 HOH 14 214 44 HOH HOH B . J 6 HOH 15 215 31 HOH HOH B . J 6 HOH 16 216 63 HOH HOH B . J 6 HOH 17 217 33 HOH HOH B . J 6 HOH 18 218 58 HOH HOH B . J 6 HOH 19 219 52 HOH HOH B . J 6 HOH 20 220 55 HOH HOH B . J 6 HOH 21 221 7 HOH HOH B . J 6 HOH 22 222 50 HOH HOH B . J 6 HOH 23 223 59 HOH HOH B . J 6 HOH 24 224 20 HOH HOH B . J 6 HOH 25 225 38 HOH HOH B . J 6 HOH 26 226 62 HOH HOH B . J 6 HOH 27 227 51 HOH HOH B . J 6 HOH 28 228 43 HOH HOH B . J 6 HOH 29 229 48 HOH HOH B . J 6 HOH 30 230 4 HOH HOH B . J 6 HOH 31 231 61 HOH HOH B . J 6 HOH 32 232 32 HOH HOH B . J 6 HOH 33 233 57 HOH HOH B . J 6 HOH 34 234 22 HOH HOH B . J 6 HOH 35 235 27 HOH HOH B . J 6 HOH 36 236 10 HOH HOH B . J 6 HOH 37 237 42 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2490 ? 1 MORE -64 ? 1 'SSA (A^2)' 3450 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O6 ? A DG 8 ? A DG 8 ? 1_555 70.5 ? 2 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 67.4 ? 3 O6 ? A DG 8 ? A DG 8 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 83.2 ? 4 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O A I HOH . ? A HOH 210 ? 1_555 86.4 ? 5 O6 ? A DG 8 ? A DG 8 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O A I HOH . ? A HOH 210 ? 1_555 156.2 ? 6 O ? I HOH . ? A HOH 211 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O A I HOH . ? A HOH 210 ? 1_555 93.2 ? 7 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O B I HOH . ? A HOH 210 ? 1_555 57.0 ? 8 O6 ? A DG 8 ? A DG 8 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O B I HOH . ? A HOH 210 ? 1_555 124.6 ? 9 O ? I HOH . ? A HOH 211 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O B I HOH . ? A HOH 210 ? 1_555 62.2 ? 10 O A I HOH . ? A HOH 210 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O B I HOH . ? A HOH 210 ? 1_555 37.1 ? 11 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? J HOH . ? B HOH 236 ? 4_545 135.2 ? 12 O6 ? A DG 8 ? A DG 8 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? J HOH . ? B HOH 236 ? 4_545 75.9 ? 13 O ? I HOH . ? A HOH 211 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? J HOH . ? B HOH 236 ? 4_545 136.7 ? 14 O A I HOH . ? A HOH 210 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? J HOH . ? B HOH 236 ? 4_545 120.2 ? 15 O B I HOH . ? A HOH 210 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? J HOH . ? B HOH 236 ? 4_545 157.2 ? 16 O6 ? A DG 7 ? A DG 7 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? J HOH . ? B HOH 237 ? 4_545 124.3 ? 17 O6 ? A DG 8 ? A DG 8 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? J HOH . ? B HOH 237 ? 4_545 71.2 ? 18 O ? I HOH . ? A HOH 211 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? J HOH . ? B HOH 237 ? 4_545 69.4 ? 19 O A I HOH . ? A HOH 210 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? J HOH . ? B HOH 237 ? 4_545 129.4 ? 20 O B I HOH . ? A HOH 210 ? 1_555 BA ? C BA . ? A BA 101 ? 1_555 O ? J HOH . ? B HOH 237 ? 4_545 124.8 ? 21 O ? J HOH . ? B HOH 236 ? 4_545 BA ? C BA . ? A BA 101 ? 1_555 O ? J HOH . ? B HOH 237 ? 4_545 68.1 ? 22 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O6 ? B DG 8 ? B DG 8 ? 1_555 79.5 ? 23 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? I HOH . ? A HOH 203 ? 1_555 111.9 ? 24 O6 ? B DG 8 ? B DG 8 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? I HOH . ? A HOH 203 ? 1_555 65.0 ? 25 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 215 ? 1_555 60.4 ? 26 O6 ? B DG 8 ? B DG 8 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 215 ? 1_555 91.5 ? 27 O ? I HOH . ? A HOH 203 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 215 ? 1_555 64.5 ? 28 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 203 ? 1_555 70.1 ? 29 O6 ? B DG 8 ? B DG 8 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 203 ? 1_555 149.4 ? 30 O ? I HOH . ? A HOH 203 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 203 ? 1_555 129.6 ? 31 O ? J HOH . ? B HOH 215 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 203 ? 1_555 76.5 ? 32 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 208 ? 1_555 147.3 ? 33 O6 ? B DG 8 ? B DG 8 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 208 ? 1_555 77.5 ? 34 O ? I HOH . ? A HOH 203 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 208 ? 1_555 78.6 ? 35 O ? J HOH . ? B HOH 215 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 208 ? 1_555 142.6 ? 36 O ? J HOH . ? B HOH 203 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 208 ? 1_555 128.3 ? 37 O6 ? B DG 7 ? B DG 7 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 217 ? 1_555 96.6 ? 38 O6 ? B DG 8 ? B DG 8 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 217 ? 1_555 123.2 ? 39 O ? I HOH . ? A HOH 203 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 217 ? 1_555 151.5 ? 40 O ? J HOH . ? B HOH 215 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 217 ? 1_555 135.6 ? 41 O ? J HOH . ? B HOH 203 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 217 ? 1_555 59.5 ? 42 O ? J HOH . ? B HOH 208 ? 1_555 BA ? G BA . ? B BA 102 ? 1_555 O ? J HOH . ? B HOH 217 ? 1_555 77.3 ? 43 O ? I HOH . ? A HOH 206 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O A I HOH . ? A HOH 210 ? 1_555 84.3 ? 44 O ? I HOH . ? A HOH 206 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O B I HOH . ? A HOH 210 ? 1_555 50.4 ? 45 O A I HOH . ? A HOH 210 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O B I HOH . ? A HOH 210 ? 1_555 35.6 ? 46 O ? J HOH . ? B HOH 216 ? 1_555 NA ? H NA . ? B NA 103 ? 1_555 O ? J HOH . ? B HOH 222 ? 1_555 119.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-11-06 2 'Structure model' 1 1 2020-04-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_id_ISSN' 2 2 'Structure model' '_citation.journal_volume' 3 2 'Structure model' '_citation.page_first' 4 2 'Structure model' '_citation.page_last' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.name' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.16_3549 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? DIALS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXCD ? ? ? . 5 # _pdbx_entry_details.entry_id 6S7D _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OP1 A DG 7 ? ? O A HOH 201 ? ? 2.12 2 1 OP2 B DC 3 ? ? O B HOH 201 ? ? 2.16 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 222 ? 5.94 . 2 1 O ? A HOH 223 ? 10.16 . 3 1 O ? B HOH 236 ? 8.18 . 4 1 O ? B HOH 237 ? 8.64 . # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6S7D 'double helix' 6S7D 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 10 1_555 -0.459 -0.097 -0.246 -15.110 -11.068 -1.536 1 A_DG1:DC10_B A 1 ? B 10 ? 19 1 1 A DC 3 1_555 B DG 8 1_555 0.421 -0.244 -0.256 13.222 -14.208 3.277 2 A_DC3:DG8_B A 3 ? B 8 ? 19 1 1 A DC 4 1_555 B DG 7 1_555 -0.225 -0.243 -0.110 3.536 -9.418 -0.984 3 A_DC4:DG7_B A 4 ? B 7 ? 19 1 1 A DC 5 1_555 B DG 6 1_555 0.242 -0.279 -0.611 6.339 -10.012 3.198 4 A_DC5:DG6_B A 5 ? B 6 ? 19 1 1 A DG 6 1_555 B DC 5 1_555 -0.370 -0.260 0.027 -7.679 -20.796 2.290 5 A_DG6:DC5_B A 6 ? B 5 ? 19 1 1 A DG 7 1_555 B DC 4 1_555 -0.153 -0.352 0.154 -11.699 -12.522 0.281 6 A_DG7:DC4_B A 7 ? B 4 ? 19 1 1 A DG 8 1_555 B DC 3 1_555 -0.638 -0.387 -0.293 -15.530 -20.346 3.300 7 A_DG8:DC3_B A 8 ? B 3 ? 19 1 1 A DC 10 1_555 B DG 1 1_555 1.033 -0.007 0.284 11.611 1.217 7.662 8 A_DC10:DG1_B A 10 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 10 1_555 A DC 3 1_555 B DG 8 1_555 0.255 -1.426 5.804 -1.795 8.329 68.512 -1.795 -0.341 5.612 7.369 1.588 68.976 1 AA_DG1DC3:DG8DC10_BB A 1 ? B 10 ? A 3 ? B 8 ? 1 A DC 3 1_555 B DG 8 1_555 A DC 4 1_555 B DG 7 1_555 -0.107 -2.195 3.520 -3.751 8.401 24.418 -7.095 -0.759 2.619 19.021 8.493 26.069 2 AA_DC3DC4:DG7DG8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A DC 4 1_555 B DG 7 1_555 A DC 5 1_555 B DG 6 1_555 -0.320 -1.468 3.112 3.076 9.797 34.122 -3.668 0.921 2.568 16.246 -5.101 35.589 3 AA_DC4DC5:DG6DG7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DC 5 1_555 B DG 6 1_555 A DG 6 1_555 B DC 5 1_555 -0.010 -1.524 3.437 -2.175 16.628 30.131 -5.017 -0.302 2.303 29.307 3.834 34.388 4 AA_DC5DG6:DC5DG6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DG 6 1_555 B DC 5 1_555 A DG 7 1_555 B DC 4 1_555 0.652 -1.875 3.301 1.349 8.489 32.943 -4.484 -0.911 2.770 14.660 -2.329 34.015 5 AA_DG6DG7:DC4DC5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A DG 7 1_555 B DC 4 1_555 A DG 8 1_555 B DC 3 1_555 0.745 -2.117 3.359 7.804 9.737 24.785 -6.648 0.229 2.485 21.065 -16.884 27.705 6 AA_DG7DG8:DC3DC4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DG 8 1_555 B DC 3 1_555 A DC 10 1_555 B DG 1 1_555 0.694 -1.600 5.792 -4.053 12.366 70.907 -2.081 -0.826 5.447 10.571 3.465 71.937 7 AA_DG8DC10:DG1DC3_BB A 8 ? B 3 ? A 10 ? B 1 ? # _pdbx_audit_support.funding_organization 'Engineering and Physical Sciences Research Council' _pdbx_audit_support.country 'United Kingdom' _pdbx_audit_support.grant_number EP/C00776X/1 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id XCI _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id XCI _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'BARIUM ION' BA 3 'SODIUM ION' NA 4 'CHLORIDE ION' CL 5 SPERMINE SPM 6 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.id 1 _space_group.name_H-M_alt 'P 31 2 1' _space_group.name_Hall ;P 31 2" ; _space_group.IT_number 152 _space_group.crystal_system trigonal # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z+1/3 3 -x+y,-x,z+2/3 4 x-y,-y,-z+2/3 5 -x,-x+y,-z+1/3 6 y,x,-z #