HEADER OXIDOREDUCTASE 04-JUL-19 6S7E TITLE PLANT CYSTEINE OXIDASE PCO4 FROM ARABIDOPSIS THALIANA (USING PEG 3350 TITLE 2 AND NAF AS PRECIPITANTS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLANT CYSTEINE OXIDASE 4; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.20; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PCO4, AT2G42670, F14N22.6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 28A KEYWDS DOUBLE STRANDED BETA HELIX FOLD, CYSTEINE DIOXYGENASE, IRON COFACTOR, KEYWDS 2 OXYGEN SENSING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.D.WHITE,C.W.LEVY,E.FLASHMAN,M.A.MCDONOUGH REVDAT 3 15-MAY-24 6S7E 1 REMARK REVDAT 2 23-DEC-20 6S7E 1 JRNL REVDAT 1 22-JUL-20 6S7E 0 JRNL AUTH M.D.WHITE,L.DALLE CARBONARE,M.LAVILLA PUERTA,S.IACOPINO, JRNL AUTH 2 M.EDWARDS,K.DUNNE,E.PIRES,C.LEVY,M.A.MCDONOUGH,F.LICAUSI, JRNL AUTH 3 E.FLASHMAN JRNL TITL STRUCTURES OF ARABIDOPSIS THALIANA OXYGEN-SENSING PLANT JRNL TITL 2 CYSTEINE OXIDASES 4 AND 5 ENABLE TARGETED MANIPULATION OF JRNL TITL 3 THEIR ACTIVITY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 23140 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32868422 JRNL DOI 10.1073/PNAS.2000206117 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 22303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.630 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.4570 - 3.7827 1.00 2512 139 0.1770 0.2224 REMARK 3 2 3.7827 - 3.0038 1.00 2396 141 0.1738 0.2094 REMARK 3 3 3.0038 - 2.6245 1.00 2382 112 0.1819 0.2141 REMARK 3 4 2.6245 - 2.3847 0.99 2328 140 0.1826 0.2931 REMARK 3 5 2.3847 - 2.2139 0.99 2330 130 0.1952 0.2247 REMARK 3 6 2.2139 - 2.0834 0.99 2311 135 0.2043 0.2457 REMARK 3 7 2.0834 - 1.9791 0.98 2267 162 0.2243 0.3141 REMARK 3 8 1.9791 - 1.8930 0.98 2279 143 0.2592 0.2894 REMARK 3 9 1.8930 - 1.8201 0.98 2242 154 0.3059 0.3376 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3581 33.2668 12.0673 REMARK 3 T TENSOR REMARK 3 T11: 0.3754 T22: 0.2959 REMARK 3 T33: 0.3863 T12: 0.0758 REMARK 3 T13: -0.1584 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 3.9984 L22: 7.1320 REMARK 3 L33: 3.8741 L12: 4.4356 REMARK 3 L13: -1.0796 L23: -0.0400 REMARK 3 S TENSOR REMARK 3 S11: -0.1198 S12: 0.2415 S13: 0.7023 REMARK 3 S21: -0.5730 S22: 0.0525 S23: 1.0362 REMARK 3 S31: -0.2754 S32: -0.2335 S33: 0.1044 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5174 41.1375 17.8173 REMARK 3 T TENSOR REMARK 3 T11: 0.3895 T22: 0.2660 REMARK 3 T33: 0.3635 T12: -0.0158 REMARK 3 T13: -0.0933 T23: -0.0422 REMARK 3 L TENSOR REMARK 3 L11: 3.9401 L22: 4.2234 REMARK 3 L33: 7.4726 L12: -2.4272 REMARK 3 L13: 1.3853 L23: -4.6238 REMARK 3 S TENSOR REMARK 3 S11: -0.1893 S12: 0.0599 S13: 0.3353 REMARK 3 S21: -0.7343 S22: 0.3738 S23: 0.6155 REMARK 3 S31: -0.1453 S32: -0.5391 S33: -0.1864 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8214 21.9911 28.8285 REMARK 3 T TENSOR REMARK 3 T11: 0.5240 T22: 0.3558 REMARK 3 T33: 0.4918 T12: 0.0458 REMARK 3 T13: -0.0547 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 6.8183 L22: 9.5144 REMARK 3 L33: 9.5713 L12: -0.8470 REMARK 3 L13: -0.6869 L23: -3.4852 REMARK 3 S TENSOR REMARK 3 S11: 0.1705 S12: -0.7526 S13: -1.0292 REMARK 3 S21: 0.2578 S22: 0.4531 S23: -0.0601 REMARK 3 S31: 1.0838 S32: -0.0079 S33: -0.7034 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9464 32.1671 16.0502 REMARK 3 T TENSOR REMARK 3 T11: 0.3248 T22: 0.2563 REMARK 3 T33: 0.3065 T12: 0.0077 REMARK 3 T13: -0.0003 T23: -0.0368 REMARK 3 L TENSOR REMARK 3 L11: 3.7564 L22: 6.9200 REMARK 3 L33: 6.2828 L12: 0.8976 REMARK 3 L13: 1.1159 L23: 0.9317 REMARK 3 S TENSOR REMARK 3 S11: -0.2026 S12: 0.1673 S13: -0.1704 REMARK 3 S21: -0.5893 S22: 0.1752 S23: -0.4219 REMARK 3 S31: -0.0114 S32: 0.0467 S33: 0.0445 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 90 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0307 39.7827 27.1035 REMARK 3 T TENSOR REMARK 3 T11: 0.2833 T22: 0.2911 REMARK 3 T33: 0.2970 T12: 0.0343 REMARK 3 T13: -0.0096 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 1.9399 L22: 5.5465 REMARK 3 L33: 1.0974 L12: 2.3360 REMARK 3 L13: 0.0132 L23: 0.6925 REMARK 3 S TENSOR REMARK 3 S11: 0.1362 S12: -0.1616 S13: -0.0141 REMARK 3 S21: 0.1332 S22: -0.0181 S23: -0.2742 REMARK 3 S31: 0.1592 S32: 0.1825 S33: -0.1124 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8234 50.4120 29.3530 REMARK 3 T TENSOR REMARK 3 T11: 0.3062 T22: 0.3956 REMARK 3 T33: 0.2854 T12: 0.0436 REMARK 3 T13: -0.0417 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 4.7188 L22: 9.0763 REMARK 3 L33: 3.7779 L12: 4.5194 REMARK 3 L13: -1.7347 L23: -2.2511 REMARK 3 S TENSOR REMARK 3 S11: -0.0587 S12: 0.1797 S13: 0.1079 REMARK 3 S21: -0.3130 S22: 0.1324 S23: -0.2358 REMARK 3 S31: 0.2200 S32: 0.2935 S33: 0.0286 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.1710 40.4584 26.1309 REMARK 3 T TENSOR REMARK 3 T11: 0.2363 T22: 0.2311 REMARK 3 T33: 0.2613 T12: 0.0221 REMARK 3 T13: -0.0309 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 2.1622 L22: 6.8088 REMARK 3 L33: 2.4480 L12: 1.7562 REMARK 3 L13: 0.4974 L23: -0.1265 REMARK 3 S TENSOR REMARK 3 S11: 0.1442 S12: -0.0121 S13: -0.1914 REMARK 3 S21: -0.0492 S22: -0.1208 S23: -0.2035 REMARK 3 S31: 0.2343 S32: 0.1990 S33: -0.0644 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 180 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4743 47.2815 22.9376 REMARK 3 T TENSOR REMARK 3 T11: 0.3775 T22: 0.4774 REMARK 3 T33: 0.4458 T12: 0.0005 REMARK 3 T13: 0.0986 T23: -0.0764 REMARK 3 L TENSOR REMARK 3 L11: 7.4842 L22: 5.7019 REMARK 3 L33: 9.1130 L12: 4.6376 REMARK 3 L13: 7.6782 L23: 5.1121 REMARK 3 S TENSOR REMARK 3 S11: -0.1250 S12: 0.8180 S13: -0.4657 REMARK 3 S21: -0.5479 S22: 0.5784 S23: -0.7636 REMARK 3 S31: -0.3601 S32: 1.0089 S33: -0.4631 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9689 59.6043 32.0919 REMARK 3 T TENSOR REMARK 3 T11: 0.3585 T22: 0.4934 REMARK 3 T33: 0.4922 T12: 0.0102 REMARK 3 T13: -0.0082 T23: -0.0760 REMARK 3 L TENSOR REMARK 3 L11: 5.1888 L22: 9.1585 REMARK 3 L33: 3.1241 L12: -3.7266 REMARK 3 L13: -2.3607 L23: 5.2151 REMARK 3 S TENSOR REMARK 3 S11: 0.2775 S12: 0.0821 S13: 0.6493 REMARK 3 S21: -0.2294 S22: -0.0534 S23: -0.7920 REMARK 3 S31: -0.2927 S32: -0.2100 S33: -0.2717 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8942 27.7553 17.8746 REMARK 3 T TENSOR REMARK 3 T11: 0.4355 T22: 0.2861 REMARK 3 T33: 0.5289 T12: 0.0165 REMARK 3 T13: -0.0172 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 6.7406 L22: 3.9947 REMARK 3 L33: 1.9240 L12: 4.4729 REMARK 3 L13: 2.5770 L23: 1.7647 REMARK 3 S TENSOR REMARK 3 S11: 0.2327 S12: -0.0581 S13: -0.3718 REMARK 3 S21: 0.0948 S22: 0.0343 S23: -0.8367 REMARK 3 S31: 0.2687 S32: 0.2904 S33: -0.6761 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S7E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI (III) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22349 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 26.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.70800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M NAF, 45 MG/ML REMARK 280 PROTEIN, 8MM RAP2.12 PEPTIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.20500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.61000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.85500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.61000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.20500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.85500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A 53 REMARK 465 ARG A 54 REMARK 465 SER A 55 REMARK 465 GLY A 56 REMARK 465 PRO A 57 REMARK 465 LEU A 58 REMARK 465 ASN A 59 REMARK 465 GLU A 60 REMARK 465 ARG A 61 REMARK 465 ASN A 62 REMARK 465 GLY A 63 REMARK 465 SER A 64 REMARK 465 ASN A 65 REMARK 465 GLN A 66 REMARK 465 SER A 67 REMARK 465 LEU A 126 REMARK 465 THR A 127 REMARK 465 GLU A 128 REMARK 465 PRO A 129 REMARK 465 GLU A 130 REMARK 465 ASP A 131 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 SER A 18 OG REMARK 470 ASP A 19 CG OD1 OD2 REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 PRO A 68 CG CD REMARK 470 GLN A 125 CG CD OE1 NE2 REMARK 470 PRO A 132 CG CD REMARK 470 GLN A 134 CG CD OE1 NE2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 195 CD CE NZ REMARK 470 ASP A 208 CG OD1 OD2 REMARK 470 GLN A 222 CG CD OE1 NE2 REMARK 470 ASP A 225 CG OD1 OD2 REMARK 470 VAL A 228 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 206 O HOH A 401 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 92 -5.12 75.90 REMARK 500 ASP A 143 88.59 -162.29 REMARK 500 ILE A 169 -61.28 -92.59 REMARK 500 SER A 183 103.47 -170.73 REMARK 500 ARG A 188 60.64 -107.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 98 NE2 REMARK 620 2 HIS A 100 NE2 95.6 REMARK 620 3 HIS A 164 NE2 91.8 89.7 REMARK 620 4 HOH A 461 O 90.6 79.8 169.3 REMARK 620 5 HOH A 498 O 167.1 96.6 92.5 87.3 REMARK 620 6 HOH A 515 O 87.0 174.7 94.9 95.6 80.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6S0P RELATED DB: PDB REMARK 900 CONDITION 1 DBREF 6S7E A 1 241 UNP Q9SJI9 PCO4_ARATH 1 241 SEQADV 6S7E MET A -19 UNP Q9SJI9 INITIATING METHIONINE SEQADV 6S7E GLY A -18 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E SER A -17 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E SER A -16 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E HIS A -15 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E HIS A -14 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E HIS A -13 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E HIS A -12 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E HIS A -11 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E HIS A -10 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E SER A -9 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E SER A -8 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E GLY A -7 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E LEU A -6 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E VAL A -5 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E PRO A -4 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E ARG A -3 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E GLY A -2 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E SER A -1 UNP Q9SJI9 EXPRESSION TAG SEQADV 6S7E HIS A 0 UNP Q9SJI9 EXPRESSION TAG SEQRES 1 A 261 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 261 LEU VAL PRO ARG GLY SER HIS MET PRO TYR PHE ALA GLN SEQRES 3 A 261 ARG LEU TYR ASN THR CYS LYS ALA SER PHE SER SER ASP SEQRES 4 A 261 GLY PRO ILE THR GLU ASP ALA LEU GLU LYS VAL ARG ASN SEQRES 5 A 261 VAL LEU GLU LYS ILE LYS PRO SER ASP VAL GLY ILE GLU SEQRES 6 A 261 GLN ASP ALA GLN LEU ALA ARG SER ARG SER GLY PRO LEU SEQRES 7 A 261 ASN GLU ARG ASN GLY SER ASN GLN SER PRO PRO ALA ILE SEQRES 8 A 261 LYS TYR LEU HIS LEU HIS GLU CYS ASP SER PHE SER ILE SEQRES 9 A 261 GLY ILE PHE CYS MET PRO PRO SER SER MET ILE PRO LEU SEQRES 10 A 261 HIS ASN HIS PRO GLY MET THR VAL LEU SER LYS LEU VAL SEQRES 11 A 261 TYR GLY SER MET HIS VAL LYS SER TYR ASP TRP LEU GLU SEQRES 12 A 261 PRO GLN LEU THR GLU PRO GLU ASP PRO SER GLN ALA ARG SEQRES 13 A 261 PRO ALA LYS LEU VAL LYS ASP THR GLU MET THR ALA GLN SEQRES 14 A 261 SER PRO VAL THR THR LEU TYR PRO LYS SER GLY GLY ASN SEQRES 15 A 261 ILE HIS CYS PHE LYS ALA ILE THR HIS CYS ALA ILE LEU SEQRES 16 A 261 ASP ILE LEU ALA PRO PRO TYR SER SER GLU HIS ASP ARG SEQRES 17 A 261 HIS CYS THR TYR PHE ARG LYS SER ARG ARG GLU ASP LEU SEQRES 18 A 261 PRO GLY GLU LEU GLU VAL ASP GLY GLU VAL VAL THR ASP SEQRES 19 A 261 VAL THR TRP LEU GLU GLU PHE GLN PRO PRO ASP ASP PHE SEQRES 20 A 261 VAL ILE ARG ARG ILE PRO TYR ARG GLY PRO VAL ILE ARG SEQRES 21 A 261 THR HET FE A 301 1 HETNAM FE FE (III) ION FORMUL 2 FE FE 3+ FORMUL 3 HOH *148(H2 O) HELIX 1 AA1 TYR A 3 SER A 17 1 15 HELIX 2 AA2 THR A 23 GLU A 35 1 13 HELIX 3 AA3 LYS A 36 ILE A 37 5 2 HELIX 4 AA4 LYS A 38 VAL A 42 5 5 HELIX 5 AA5 ILE A 44 ARG A 52 1 9 SHEET 1 AA1 6 THR A 153 LEU A 155 0 SHEET 2 AA1 6 THR A 104 TYR A 111 -1 N VAL A 105 O LEU A 155 SHEET 3 AA1 6 CYS A 172 ALA A 179 -1 O LEU A 175 N LYS A 108 SHEET 4 AA1 6 SER A 83 MET A 89 -1 N GLY A 85 O ASP A 176 SHEET 5 AA1 6 ILE A 71 GLU A 78 -1 N LEU A 74 O ILE A 86 SHEET 6 AA1 6 ILE A 229 ILE A 232 1 O ARG A 230 N ILE A 71 SHEET 1 AA2 6 MET A 94 HIS A 98 0 SHEET 2 AA2 6 ILE A 163 ALA A 168 -1 O HIS A 164 N HIS A 98 SHEET 3 AA2 6 SER A 113 TRP A 121 -1 N TYR A 119 O ILE A 163 SHEET 4 AA2 6 ARG A 136 THR A 147 -1 O MET A 146 N MET A 114 SHEET 5 AA2 6 THR A 216 GLU A 220 -1 O THR A 216 N ALA A 138 SHEET 6 AA2 6 PHE A 193 LYS A 195 -1 N ARG A 194 O GLU A 219 SHEET 1 AA3 2 LEU A 205 VAL A 207 0 SHEET 2 AA3 2 GLU A 210 VAL A 212 -1 O VAL A 212 N LEU A 205 LINK NE2 HIS A 98 FE FE A 301 1555 1555 2.09 LINK NE2 HIS A 100 FE FE A 301 1555 1555 2.18 LINK NE2 HIS A 164 FE FE A 301 1555 1555 2.29 LINK FE FE A 301 O HOH A 461 1555 1555 2.15 LINK FE FE A 301 O HOH A 498 1555 1555 2.05 LINK FE FE A 301 O HOH A 515 1555 1555 2.35 CISPEP 1 ALA A 179 PRO A 180 0 -5.52 SITE 1 AC1 6 HIS A 98 HIS A 100 HIS A 164 HOH A 461 SITE 2 AC1 6 HOH A 498 HOH A 515 CRYST1 46.410 71.710 73.220 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021547 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013945 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013657 0.00000