HEADER DNA BINDING PROTEIN 05-JUL-19 6S7L TITLE ARBITRIUM RECEPTOR FROM A BACILLUS SUBTILIS KATMIRA33 PHAGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARBITRIUM RECEPTOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GLY-ILE-VAL-ARG-GLY-ALA; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 9 ORGANISM_TAXID: 1423 KEYWDS ARBITRIUM, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.MARINA,F.GALLEGO DEL SOL REVDAT 3 24-JAN-24 6S7L 1 REMARK REVDAT 2 06-JUL-22 6S7L 1 JRNL REMARK REVDAT 1 14-APR-21 6S7L 0 JRNL AUTH F.GALLEGO DEL SOL,N.QUILES-PUCHALT,A.BRADY,J.R.PENADES, JRNL AUTH 2 A.MARINA JRNL TITL INSIGHTS INTO THE MECHANISM OF ACTION OF THE ARBITRIUM JRNL TITL 2 COMMUNICATION SYSTEM IN SPBETA PHAGES. JRNL REF NAT COMMUN V. 13 3627 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35750663 JRNL DOI 10.1038/S41467-022-31144-3 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 104.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 31992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1618 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2201 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6434 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 11 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : 4.20000 REMARK 3 B33 (A**2) : -4.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.675 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.302 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6560 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6108 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8804 ; 1.763 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14240 ; 3.819 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 780 ; 5.414 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 334 ;41.588 ;25.449 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1278 ;23.780 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;25.938 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 952 ; 0.151 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7190 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1316 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3132 ; 3.410 ; 6.322 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3131 ; 3.392 ; 6.319 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3908 ; 5.463 ; 9.473 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6S7L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32018 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 104.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6S7I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2-6 0.2 M POTASSIUM ACETATE 0.1 M MES REMARK 280 6.0 15 % V/V PENTAERYTHRITOL ETHOXYLATE (15/4 EO/OH) 3 % V/V REMARK 280 JEFFAMINE T-403, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.12700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.12700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.85150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 104.88250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.85150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 104.88250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.12700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.85150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 104.88250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.12700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.85150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 104.88250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 0 REMARK 465 ALA B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 72 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 ASN B 73 N - CA - CB ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 3 -38.68 -36.05 REMARK 500 PRO A 31 6.82 -66.45 REMARK 500 VAL A 132 -38.51 -37.21 REMARK 500 ARG A 143 76.44 36.33 REMARK 500 LYS A 261 127.79 -37.89 REMARK 500 PRO B 31 6.15 -65.66 REMARK 500 VAL B 132 -38.63 -34.84 REMARK 500 ARG B 143 72.23 43.16 REMARK 500 LYS B 261 130.10 -37.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6S7I RELATED DB: PDB DBREF 6S7L A 0 386 PDB 6S7L 6S7L 0 386 DBREF 6S7L C 1 6 PDB 6S7L 6S7L 1 6 DBREF 6S7L B 0 386 PDB 6S7L 6S7L 0 386 DBREF 6S7L D 1 6 PDB 6S7L 6S7L 1 6 SEQRES 1 A 387 ALA MET GLU LEU ILE ARG ILE ALA MET LYS LYS ASP LEU SEQRES 2 A 387 GLU ASN ASP ASN SER LEU MET ASN LYS TRP ALA THR VAL SEQRES 3 A 387 ALA GLY LEU LYS ASN PRO ASN PRO LEU TYR ASP PHE LEU SEQRES 4 A 387 ASN HIS ASP GLY LYS THR PHE ASN GLU PHE SER SER ILE SEQRES 5 A 387 VAL ASN ILE VAL LYS SER GLN TYR PRO ASP ARG GLU TYR SEQRES 6 A 387 GLU LEU MET LYS ASP TYR CYS LEU ASN LEU ASP VAL LYS SEQRES 7 A 387 THR LYS ALA ALA ARG SER ALA LEU GLU TYR ALA ASP ALA SEQRES 8 A 387 ASN MET PHE PHE GLU ILE GLU ASP ALA LEU ILE ASP SER SEQRES 9 A 387 MET ILE SER CYS SER ASN MET LYS SER LYS GLU TYR GLY SEQRES 10 A 387 LYS VAL TYR LYS ILE HIS ARG GLU LEU SER LYS GLY GLU SEQRES 11 A 387 ILE ASP VAL PHE GLU ALA SER ALA ASN ILE GLY LYS GLN SEQRES 12 A 387 ARG ILE LYS THR ALA GLU MET ASN ILE PHE SER LYS MET SEQRES 13 A 387 LEU LEU MET TYR ASP CYS LEU ASN LYS GLY ASN PHE ALA SEQRES 14 A 387 PRO MET MET LEU LEU PHE GLN GLN ILE ASP LEU SER GLU SEQRES 15 A 387 ILE LYS GLU ASN ARG TYR LEU LYS ASN SER PHE GLU THR SEQRES 16 A 387 ARG ILE ASN VAL LEU LEU SER ASN ILE TYR LEU ASN GLU SEQRES 17 A 387 ASN ASN LEU GLU LEU CYS ARG GLU TYR ALA GLN LYS ALA SEQRES 18 A 387 ILE SER SER THR ASP THR GLN ARG PHE LEU VAL PHE SER SEQRES 19 A 387 TYR LEU THR ILE GLY THR SER TYR ILE PHE SER ASP PHE SEQRES 20 A 387 ASN LEU SER LYS GLN ASN TYR LEU ILE GLY LEU LYS PHE SEQRES 21 A 387 ALA LYS GLY ASN PRO GLY PHE GLU GLU PHE PHE LYS ARG SEQRES 22 A 387 ASN LEU SER PHE LEU ASN ASN PHE TRP ASN LYS GLU ASN SEQRES 23 A 387 GLU TRP ILE ASN TYR ASP SER ASP ALA VAL THR ASP MET SEQRES 24 A 387 GLN GLU VAL ILE PHE GLU LEU ILE ASN HIS LYS GLU LEU SEQRES 25 A 387 SER LYS ALA LEU GLN LEU LEU ASN LYS LEU GLU GLU ARG SEQRES 26 A 387 ASP GLN ASN GLU ASN GLU LEU GLY PHE HIS TYR TYR LEU SEQRES 27 A 387 LYS GLY LEU ILE THR ASN GLU LYS GLU ALA PHE PHE LYS SEQRES 28 A 387 SER VAL GLU TYR PHE LYS ALA SER GLN ASP LYS LEU SER SEQRES 29 A 387 ILE LYS MET PRO LEU ILE GLN LEU GLU LYS MET GLY GLU SEQRES 30 A 387 ASN PRO ARG LEU LEU LYS ILE ILE THR MET SEQRES 1 C 6 GLY ILE VAL ARG GLY ALA SEQRES 1 B 387 ALA MET GLU LEU ILE ARG ILE ALA MET LYS LYS ASP LEU SEQRES 2 B 387 GLU ASN ASP ASN SER LEU MET ASN LYS TRP ALA THR VAL SEQRES 3 B 387 ALA GLY LEU LYS ASN PRO ASN PRO LEU TYR ASP PHE LEU SEQRES 4 B 387 ASN HIS ASP GLY LYS THR PHE ASN GLU PHE SER SER ILE SEQRES 5 B 387 VAL ASN ILE VAL LYS SER GLN TYR PRO ASP ARG GLU TYR SEQRES 6 B 387 GLU LEU MET LYS ASP TYR CYS LEU ASN LEU ASP VAL LYS SEQRES 7 B 387 THR LYS ALA ALA ARG SER ALA LEU GLU TYR ALA ASP ALA SEQRES 8 B 387 ASN MET PHE PHE GLU ILE GLU ASP ALA LEU ILE ASP SER SEQRES 9 B 387 MET ILE SER CYS SER ASN MET LYS SER LYS GLU TYR GLY SEQRES 10 B 387 LYS VAL TYR LYS ILE HIS ARG GLU LEU SER LYS GLY GLU SEQRES 11 B 387 ILE ASP VAL PHE GLU ALA SER ALA ASN ILE GLY LYS GLN SEQRES 12 B 387 ARG ILE LYS THR ALA GLU MET ASN ILE PHE SER LYS MET SEQRES 13 B 387 LEU LEU MET TYR ASP CYS LEU ASN LYS GLY ASN PHE ALA SEQRES 14 B 387 PRO MET MET LEU LEU PHE GLN GLN ILE ASP LEU SER GLU SEQRES 15 B 387 ILE LYS GLU ASN ARG TYR LEU LYS ASN SER PHE GLU THR SEQRES 16 B 387 ARG ILE ASN VAL LEU LEU SER ASN ILE TYR LEU ASN GLU SEQRES 17 B 387 ASN ASN LEU GLU LEU CYS ARG GLU TYR ALA GLN LYS ALA SEQRES 18 B 387 ILE SER SER THR ASP THR GLN ARG PHE LEU VAL PHE SER SEQRES 19 B 387 TYR LEU THR ILE GLY THR SER TYR ILE PHE SER ASP PHE SEQRES 20 B 387 ASN LEU SER LYS GLN ASN TYR LEU ILE GLY LEU LYS PHE SEQRES 21 B 387 ALA LYS GLY ASN PRO GLY PHE GLU GLU PHE PHE LYS ARG SEQRES 22 B 387 ASN LEU SER PHE LEU ASN ASN PHE TRP ASN LYS GLU ASN SEQRES 23 B 387 GLU TRP ILE ASN TYR ASP SER ASP ALA VAL THR ASP MET SEQRES 24 B 387 GLN GLU VAL ILE PHE GLU LEU ILE ASN HIS LYS GLU LEU SEQRES 25 B 387 SER LYS ALA LEU GLN LEU LEU ASN LYS LEU GLU GLU ARG SEQRES 26 B 387 ASP GLN ASN GLU ASN GLU LEU GLY PHE HIS TYR TYR LEU SEQRES 27 B 387 LYS GLY LEU ILE THR ASN GLU LYS GLU ALA PHE PHE LYS SEQRES 28 B 387 SER VAL GLU TYR PHE LYS ALA SER GLN ASP LYS LEU SER SEQRES 29 B 387 ILE LYS MET PRO LEU ILE GLN LEU GLU LYS MET GLY GLU SEQRES 30 B 387 ASN PRO ARG LEU LEU LYS ILE ILE THR MET SEQRES 1 D 6 GLY ILE VAL ARG GLY ALA HET GOL A 401 6 HET GOL B 401 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *11(H2 O) HELIX 1 AA1 GLU A 2 ASP A 15 1 14 HELIX 2 AA2 SER A 17 ALA A 26 1 10 HELIX 3 AA3 PRO A 31 HIS A 40 1 10 HELIX 4 AA4 PHE A 48 TYR A 59 1 12 HELIX 5 AA5 ARG A 62 LEU A 72 1 11 HELIX 6 AA6 THR A 78 MET A 92 1 15 HELIX 7 AA7 PHE A 93 CYS A 107 1 15 HELIX 8 AA8 ASN A 109 LYS A 127 1 19 HELIX 9 AA9 ASP A 131 ARG A 143 1 13 HELIX 10 AB1 THR A 146 LYS A 164 1 19 HELIX 11 AB2 ALA A 168 GLN A 176 1 9 HELIX 12 AB3 ILE A 177 ILE A 182 5 6 HELIX 13 AB4 ASN A 185 GLU A 207 1 23 HELIX 14 AB5 ASN A 209 THR A 224 1 16 HELIX 15 AB6 THR A 226 ILE A 242 1 17 HELIX 16 AB7 ASP A 245 ALA A 260 1 16 HELIX 17 AB8 ASN A 263 ASN A 282 1 20 HELIX 18 AB9 ALA A 294 HIS A 308 1 15 HELIX 19 AC1 GLU A 310 GLU A 323 1 14 HELIX 20 AC2 ASN A 327 ASN A 343 1 17 HELIX 21 AC3 GLU A 344 SER A 358 1 15 HELIX 22 AC4 ILE A 364 MET A 374 1 11 HELIX 23 AC5 ASN A 377 MET A 386 1 10 HELIX 24 AC6 GLU B 2 ASP B 15 1 14 HELIX 25 AC7 SER B 17 ALA B 26 1 10 HELIX 26 AC8 PRO B 31 HIS B 40 1 10 HELIX 27 AC9 PHE B 48 TYR B 59 1 12 HELIX 28 AD1 ARG B 62 LEU B 72 1 11 HELIX 29 AD2 THR B 78 MET B 92 1 15 HELIX 30 AD3 PHE B 93 CYS B 107 1 15 HELIX 31 AD4 ASN B 109 LYS B 127 1 19 HELIX 32 AD5 ASP B 131 GLN B 142 1 12 HELIX 33 AD6 THR B 146 LYS B 164 1 19 HELIX 34 AD7 ALA B 168 GLN B 176 1 9 HELIX 35 AD8 ILE B 177 ILE B 182 5 6 HELIX 36 AD9 ASN B 185 GLU B 207 1 23 HELIX 37 AE1 ASN B 209 THR B 224 1 16 HELIX 38 AE2 THR B 226 ILE B 242 1 17 HELIX 39 AE3 ASP B 245 ALA B 260 1 16 HELIX 40 AE4 ASN B 263 ASN B 282 1 20 HELIX 41 AE5 ALA B 294 HIS B 308 1 15 HELIX 42 AE6 GLU B 310 GLU B 323 1 14 HELIX 43 AE7 ASN B 327 ASN B 343 1 17 HELIX 44 AE8 GLU B 344 SER B 358 1 15 HELIX 45 AE9 ILE B 364 MET B 374 1 11 HELIX 46 AF1 ASN B 377 MET B 386 1 10 SITE 1 AC1 5 GLN A 58 TYR A 59 PRO A 60 ASP A 61 SITE 2 AC1 5 ARG A 62 SITE 1 AC2 4 LYS B 250 ASN B 278 GLU B 286 TRP B 287 CRYST1 69.703 209.765 140.254 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014347 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007130 0.00000