HEADER RNA BINDING PROTEIN 10-JUL-19 6S8S TITLE EXTENDED STRUCTURE OF THE HUMAN DDX6 C-TERMINAL DOMAIN IN COMPLEX WITH TITLE 2 AN EDC3 FDF PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ATP-DEPENDENT RNA HELICASE DDX6; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ATP-DEPENDENT RNA HELICASE P54,DEAD BOX PROTEIN 6,ONCOGENE COMPND 5 RCK; COMPND 6 EC: 3.6.4.13; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ENHANCER OF MRNA-DECAPPING PROTEIN 3; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: LSM16 HOMOLOG,YJEF N-TERMINAL DOMAIN-CONTAINING PROTEIN 2, COMPND 12 HYJEF_N2,YJEF DOMAIN-CONTAINING PROTEIN 1; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX6, HLR2, RCK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: EDC3, LSM16, YJDC, YJEFN2, PP844; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSLATIONAL CONTROL, MRNA DECAY, MIRNA, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.PETER,E.VALKOV REVDAT 3 24-JAN-24 6S8S 1 REMARK REVDAT 2 09-OCT-19 6S8S 1 JRNL REVDAT 1 04-SEP-19 6S8S 0 JRNL AUTH D.PETER,V.RUSCICA,P.BAWANKAR,R.WEBER,S.HELMS,E.VALKOV, JRNL AUTH 2 C.IGREJA,E.IZAURRALDE JRNL TITL MOLECULAR BASIS FOR GIGYF-ME31B COMPLEX ASSEMBLY IN JRNL TITL 2 4EHP-MEDIATED TRANSLATIONAL REPRESSION. JRNL REF GENES DEV. V. 33 1355 2019 JRNL REFN ISSN 0890-9369 JRNL PMID 31439631 JRNL DOI 10.1101/GAD.329219.119 REMARK 2 REMARK 2 RESOLUTION. 2.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 25943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1314 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.03 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 519 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2341 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 488 REMARK 3 BIN R VALUE (WORKING SET) : 0.2338 REMARK 3 BIN FREE R VALUE : 0.2394 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.97 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 31 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3402 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 115 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.21110 REMARK 3 B22 (A**2) : -10.37150 REMARK 3 B33 (A**2) : 4.16040 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.94350 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.260 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.249 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.195 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.236 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.193 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3577 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4828 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1288 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 603 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3577 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 449 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4060 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.38 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.12 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -29.4400 14.4955 24.2661 REMARK 3 T TENSOR REMARK 3 T11: -0.0037 T22: -0.0075 REMARK 3 T33: -0.0203 T12: -0.0118 REMARK 3 T13: -0.0078 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.6072 L22: 1.3877 REMARK 3 L33: 2.3020 L12: 0.2343 REMARK 3 L13: 0.2714 L23: 0.2299 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: -0.0757 S13: 0.1245 REMARK 3 S21: 0.0619 S22: -0.0233 S23: -0.1015 REMARK 3 S31: -0.1907 S32: 0.1385 S33: 0.0339 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -41.8588 2.3072 21.9703 REMARK 3 T TENSOR REMARK 3 T11: -0.1403 T22: -0.1045 REMARK 3 T33: -0.0541 T12: -0.0147 REMARK 3 T13: 0.0164 T23: -0.0372 REMARK 3 L TENSOR REMARK 3 L11: 5.7986 L22: 3.2306 REMARK 3 L33: 4.1146 L12: 0.5958 REMARK 3 L13: 2.4323 L23: 0.9882 REMARK 3 S TENSOR REMARK 3 S11: -0.1317 S12: -0.5765 S13: 0.2379 REMARK 3 S21: 0.2872 S22: -0.1777 S23: 0.1823 REMARK 3 S31: 0.2011 S32: -0.4924 S33: 0.3095 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -22.3543 14.0658 -7.9614 REMARK 3 T TENSOR REMARK 3 T11: -0.0631 T22: -0.0015 REMARK 3 T33: -0.0571 T12: -0.0163 REMARK 3 T13: 0.0022 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 1.9234 L22: 1.1538 REMARK 3 L33: 1.4869 L12: -0.3467 REMARK 3 L13: 0.3058 L23: -0.2426 REMARK 3 S TENSOR REMARK 3 S11: 0.0569 S12: 0.0287 S13: -0.0418 REMARK 3 S21: -0.0293 S22: -0.0496 S23: 0.0143 REMARK 3 S31: 0.0005 S32: 0.0718 S33: -0.0074 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -5.5757 8.9620 -5.7014 REMARK 3 T TENSOR REMARK 3 T11: -0.1146 T22: -0.0006 REMARK 3 T33: -0.0540 T12: -0.0182 REMARK 3 T13: 0.0407 T23: 0.0272 REMARK 3 L TENSOR REMARK 3 L11: 4.8731 L22: 1.3554 REMARK 3 L33: 6.0656 L12: 1.2370 REMARK 3 L13: 4.8606 L23: 1.4265 REMARK 3 S TENSOR REMARK 3 S11: -0.1905 S12: 0.4087 S13: -0.1074 REMARK 3 S21: -0.2816 S22: 0.2418 S23: -0.0889 REMARK 3 S31: -0.3419 S32: 1.0469 S33: -0.0513 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S8S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25958 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.210 REMARK 200 RESOLUTION RANGE LOW (A) : 25.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.46700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2WAX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CAPS PH 10.5, 1.2 M NAH2PO4, 0.8 REMARK 280 M K2HPO4, 0.2 M LI2SO4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 86.21250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.93900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 86.21250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.93900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 415 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 280 REMARK 465 PRO A 281 REMARK 465 GLN A 282 REMARK 465 ASP A 283 REMARK 465 PRO A 284 REMARK 465 TYR A 285 REMARK 465 GLU A 286 REMARK 465 ILE A 287 REMARK 465 ASN A 288 REMARK 465 LEU A 289 REMARK 465 MET A 290 REMARK 465 GLU A 291 REMARK 465 GLU A 292 REMARK 465 LEU A 293 REMARK 465 THR A 294 REMARK 465 LEU A 295 REMARK 465 SER A 464 REMARK 465 GLU A 465 REMARK 465 PRO A 466 REMARK 465 VAL A 467 REMARK 465 GLU A 468 REMARK 465 ASP A 469 REMARK 465 GLU A 470 REMARK 465 LYS A 471 REMARK 465 PRO A 472 REMARK 465 GLY B 185 REMARK 465 PRO B 186 REMARK 465 HIS B 187 REMARK 465 MET B 188 REMARK 465 ALA B 189 REMARK 465 ARG B 227 REMARK 465 ARG B 228 REMARK 465 GLY C 280 REMARK 465 PRO C 281 REMARK 465 GLN C 282 REMARK 465 ASP C 283 REMARK 465 PRO C 284 REMARK 465 TYR C 285 REMARK 465 GLU C 286 REMARK 465 ILE C 287 REMARK 465 ASN C 288 REMARK 465 LEU C 289 REMARK 465 MET C 290 REMARK 465 GLU C 291 REMARK 465 GLU C 292 REMARK 465 LEU C 293 REMARK 465 THR C 294 REMARK 465 LEU C 295 REMARK 465 ASP C 469 REMARK 465 GLU C 470 REMARK 465 LYS C 471 REMARK 465 PRO C 472 REMARK 465 GLY D 185 REMARK 465 PRO D 186 REMARK 465 HIS D 187 REMARK 465 MET D 188 REMARK 465 ALA D 189 REMARK 465 ARG D 227 REMARK 465 ARG D 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 324 -75.30 -91.04 REMARK 500 LYS A 356 35.09 -89.72 REMARK 500 ASP A 388 71.76 -156.75 REMARK 500 TYR A 458 -5.33 -149.89 REMARK 500 LEU B 191 87.07 -65.45 REMARK 500 ASN C 324 -73.88 -96.20 REMARK 500 LYS C 356 35.27 -90.35 REMARK 500 TYR C 458 -4.37 -152.05 REMARK 500 LEU D 191 109.22 -37.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 698 DISTANCE = 5.97 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CXS A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CXS A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CXS A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CXS C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CXS C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WAX RELATED DB: PDB DBREF 6S8S A 284 472 UNP P26196 DDX6_HUMAN 295 483 DBREF 6S8S B 192 228 UNP Q96F86 EDC3_HUMAN 192 228 DBREF 6S8S C 284 472 UNP P26196 DDX6_HUMAN 295 483 DBREF 6S8S D 192 228 UNP Q96F86 EDC3_HUMAN 192 228 SEQADV 6S8S GLY A 280 UNP P26196 EXPRESSION TAG SEQADV 6S8S PRO A 281 UNP P26196 EXPRESSION TAG SEQADV 6S8S GLN A 282 UNP P26196 EXPRESSION TAG SEQADV 6S8S ASP A 283 UNP P26196 EXPRESSION TAG SEQADV 6S8S GLY B 185 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S PRO B 186 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S HIS B 187 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S MET B 188 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S ALA B 189 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S ASP B 190 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S LEU B 191 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S GLY C 280 UNP P26196 EXPRESSION TAG SEQADV 6S8S PRO C 281 UNP P26196 EXPRESSION TAG SEQADV 6S8S GLN C 282 UNP P26196 EXPRESSION TAG SEQADV 6S8S ASP C 283 UNP P26196 EXPRESSION TAG SEQADV 6S8S GLY D 185 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S PRO D 186 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S HIS D 187 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S MET D 188 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S ALA D 189 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S ASP D 190 UNP Q96F86 EXPRESSION TAG SEQADV 6S8S LEU D 191 UNP Q96F86 EXPRESSION TAG SEQRES 1 A 193 GLY PRO GLN ASP PRO TYR GLU ILE ASN LEU MET GLU GLU SEQRES 2 A 193 LEU THR LEU LYS GLY VAL THR GLN TYR TYR ALA TYR VAL SEQRES 3 A 193 THR GLU ARG GLN LYS VAL HIS CYS LEU ASN THR LEU PHE SEQRES 4 A 193 SER ARG LEU GLN ILE ASN GLN SER ILE ILE PHE CYS ASN SEQRES 5 A 193 SER SER GLN ARG VAL GLU LEU LEU ALA LYS LYS ILE SER SEQRES 6 A 193 GLN LEU GLY TYR SER CYS PHE TYR ILE HIS ALA LYS MET SEQRES 7 A 193 ARG GLN GLU HIS ARG ASN ARG VAL PHE HIS ASP PHE ARG SEQRES 8 A 193 ASN GLY LEU CYS ARG ASN LEU VAL CYS THR ASP LEU PHE SEQRES 9 A 193 THR ARG GLY ILE ASP ILE GLN ALA VAL ASN VAL VAL ILE SEQRES 10 A 193 ASN PHE ASP PHE PRO LYS LEU ALA GLU THR TYR LEU HIS SEQRES 11 A 193 ARG ILE GLY ARG SER GLY ARG PHE GLY HIS LEU GLY LEU SEQRES 12 A 193 ALA ILE ASN LEU ILE THR TYR ASP ASP ARG PHE ASN LEU SEQRES 13 A 193 LYS SER ILE GLU GLU GLN LEU GLY THR GLU ILE LYS PRO SEQRES 14 A 193 ILE PRO SER ASN ILE ASP LYS SER LEU TYR VAL ALA GLU SEQRES 15 A 193 TYR HIS SER GLU PRO VAL GLU ASP GLU LYS PRO SEQRES 1 B 44 GLY PRO HIS MET ALA ASP LEU PHE GLY ASP ASP ILE GLU SEQRES 2 B 44 GLU ILE PRO ASP THR ASP PHE ASP PHE GLU GLY ASN LEU SEQRES 3 B 44 ALA LEU PHE ASP LYS ALA ALA VAL PHE GLU GLU ILE ASP SEQRES 4 B 44 THR TYR GLU ARG ARG SEQRES 1 C 193 GLY PRO GLN ASP PRO TYR GLU ILE ASN LEU MET GLU GLU SEQRES 2 C 193 LEU THR LEU LYS GLY VAL THR GLN TYR TYR ALA TYR VAL SEQRES 3 C 193 THR GLU ARG GLN LYS VAL HIS CYS LEU ASN THR LEU PHE SEQRES 4 C 193 SER ARG LEU GLN ILE ASN GLN SER ILE ILE PHE CYS ASN SEQRES 5 C 193 SER SER GLN ARG VAL GLU LEU LEU ALA LYS LYS ILE SER SEQRES 6 C 193 GLN LEU GLY TYR SER CYS PHE TYR ILE HIS ALA LYS MET SEQRES 7 C 193 ARG GLN GLU HIS ARG ASN ARG VAL PHE HIS ASP PHE ARG SEQRES 8 C 193 ASN GLY LEU CYS ARG ASN LEU VAL CYS THR ASP LEU PHE SEQRES 9 C 193 THR ARG GLY ILE ASP ILE GLN ALA VAL ASN VAL VAL ILE SEQRES 10 C 193 ASN PHE ASP PHE PRO LYS LEU ALA GLU THR TYR LEU HIS SEQRES 11 C 193 ARG ILE GLY ARG SER GLY ARG PHE GLY HIS LEU GLY LEU SEQRES 12 C 193 ALA ILE ASN LEU ILE THR TYR ASP ASP ARG PHE ASN LEU SEQRES 13 C 193 LYS SER ILE GLU GLU GLN LEU GLY THR GLU ILE LYS PRO SEQRES 14 C 193 ILE PRO SER ASN ILE ASP LYS SER LEU TYR VAL ALA GLU SEQRES 15 C 193 TYR HIS SER GLU PRO VAL GLU ASP GLU LYS PRO SEQRES 1 D 44 GLY PRO HIS MET ALA ASP LEU PHE GLY ASP ASP ILE GLU SEQRES 2 D 44 GLU ILE PRO ASP THR ASP PHE ASP PHE GLU GLY ASN LEU SEQRES 3 D 44 ALA LEU PHE ASP LYS ALA ALA VAL PHE GLU GLU ILE ASP SEQRES 4 D 44 THR TYR GLU ARG ARG HET PO4 A 501 5 HET PO4 A 502 5 HET PO4 A 503 5 HET PO4 A 504 5 HET PO4 A 505 5 HET CXS A 506 14 HET CXS A 507 14 HET CXS A 508 14 HET PO4 C 501 5 HET PO4 C 502 5 HET PO4 C 503 5 HET CXS C 504 14 HET CXS C 505 14 HET PO4 D 301 5 HETNAM PO4 PHOSPHATE ION HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID FORMUL 5 PO4 9(O4 P 3-) FORMUL 10 CXS 5(C9 H19 N O3 S) FORMUL 19 HOH *258(H2 O) HELIX 1 AA1 THR A 306 ARG A 308 5 3 HELIX 2 AA2 GLN A 309 LEU A 321 1 13 HELIX 3 AA3 SER A 332 GLY A 347 1 16 HELIX 4 AA4 ARG A 358 ASN A 371 1 14 HELIX 5 AA5 LEU A 403 ILE A 411 1 9 HELIX 6 AA6 THR A 428 ASP A 430 5 3 HELIX 7 AA7 ASP A 431 GLY A 443 1 13 HELIX 8 AA8 ASP A 454 TYR A 458 5 5 HELIX 9 AA9 ASP B 205 ALA B 211 1 7 HELIX 10 AB1 ASP B 214 GLU B 226 1 13 HELIX 11 AB2 THR C 306 ARG C 308 5 3 HELIX 12 AB3 GLN C 309 LEU C 321 1 13 HELIX 13 AB4 SER C 332 GLY C 347 1 16 HELIX 14 AB5 ARG C 358 ASN C 371 1 14 HELIX 15 AB6 LEU C 403 GLY C 412 1 10 HELIX 16 AB7 THR C 428 ASP C 430 5 3 HELIX 17 AB8 ASP C 431 GLY C 443 1 13 HELIX 18 AB9 ASP C 454 TYR C 458 5 5 HELIX 19 AC1 ASP D 195 ILE D 199 5 5 HELIX 20 AC2 ASP D 205 ALA D 211 1 7 HELIX 21 AC3 ASP D 214 GLU D 226 1 13 SHEET 1 AA1 7 PHE A 351 ILE A 353 0 SHEET 2 AA1 7 ASN A 376 CYS A 379 1 O VAL A 378 N PHE A 351 SHEET 3 AA1 7 GLN A 325 PHE A 329 1 N ILE A 328 O LEU A 377 SHEET 4 AA1 7 VAL A 392 ASN A 397 1 O ILE A 396 N ILE A 327 SHEET 5 AA1 7 LEU A 422 ILE A 427 1 O ILE A 424 N ASN A 397 SHEET 6 AA1 7 THR A 299 TYR A 304 1 N ALA A 303 O ILE A 427 SHEET 7 AA1 7 LYS A 447 PRO A 448 1 O LYS A 447 N GLN A 300 SHEET 1 AA2 7 PHE C 351 ILE C 353 0 SHEET 2 AA2 7 ASN C 376 CYS C 379 1 O VAL C 378 N PHE C 351 SHEET 3 AA2 7 GLN C 325 PHE C 329 1 N ILE C 328 O LEU C 377 SHEET 4 AA2 7 VAL C 392 ASN C 397 1 O ILE C 396 N ILE C 327 SHEET 5 AA2 7 GLY C 421 ILE C 427 1 O ILE C 424 N ASN C 397 SHEET 6 AA2 7 VAL C 298 TYR C 304 1 N ALA C 303 O ILE C 427 SHEET 7 AA2 7 LYS C 447 PRO C 448 1 O LYS C 447 N GLN C 300 SITE 1 AC1 7 ARG A 308 GLN A 309 HIS A 312 HOH A 614 SITE 2 AC1 7 HOH A 634 PRO B 200 PHE B 204 SITE 1 AC2 4 SER A 332 SER A 333 LYS A 356 HOH A 621 SITE 1 AC3 3 MET A 357 ARG A 358 HIS A 361 SITE 1 AC4 7 PHE A 318 SER A 319 TYR A 348 CXS A 507 SITE 2 AC4 7 TYR C 348 CXS C 505 HOH C 614 SITE 1 AC5 6 ASP A 381 PRO A 401 LYS A 402 LEU A 403 SITE 2 AC5 6 THR A 406 HOH A 607 SITE 1 AC6 9 ARG A 432 PHE A 433 HOH A 604 HOH A 655 SITE 2 AC6 9 TYR B 225 HOH B 304 HOH B 312 ASN C 363 SITE 3 AC6 9 PHE C 383 SITE 1 AC7 11 PHE A 318 SER A 319 LEU A 321 GLN A 322 SITE 2 AC7 11 TYR A 348 LYS A 455 PO4 A 504 HOH A 611 SITE 3 AC7 11 HOH A 640 LEU C 346 GLY C 347 SITE 1 AC8 4 ARG A 320 PRO A 450 SER A 451 PHE B 206 SITE 1 AC9 5 SER C 332 SER C 333 GLN C 334 LYS C 356 SITE 2 AC9 5 HOH C 634 SITE 1 AD1 7 ARG C 370 ASP C 388 GLN C 390 HOH C 620 SITE 2 AD1 7 HOH C 622 HOH C 627 HOH C 643 SITE 1 AD2 3 MET C 357 ARG C 358 HIS C 361 SITE 1 AD3 4 ARG C 320 PRO C 450 SER C 451 PO4 D 301 SITE 1 AD4 10 GLY A 347 PO4 A 504 PHE C 318 SER C 319 SITE 2 AD4 10 ARG C 320 LEU C 321 GLN C 322 TYR C 348 SITE 3 AD4 10 ARG C 375 HOH C 617 SITE 1 AD5 7 SER C 451 CXS C 504 ASP D 205 PHE D 206 SITE 2 AD5 7 GLU D 207 HOH D 402 HOH D 404 CRYST1 172.425 47.878 65.757 90.00 96.34 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005800 0.000000 0.000644 0.00000 SCALE2 0.000000 0.020886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015301 0.00000