HEADER OXIDOREDUCTASE 10-JUL-19 6S8Y TITLE CRYSTAL STRUCTURE OF CYTOCHROME C IN COMPLEX WITH A SULFONATED TITLE 2 QUINOLINE-DERIVED FOLDAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C ISO-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CYC1, YJR048W, J1653; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CHARGE INTERACTIONS, CYTOCHROME C, PROTEIN ASSEMBLY, PROTEIN KEYWDS 2 RECOGNITION, QUINOLINE FOLDAMER, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.ALEX,V.CORVAGLIA,X.HU,S.ENGILBERGE,I.HUC,P.B.CROWLEY REVDAT 2 24-JAN-24 6S8Y 1 LINK REVDAT 1 25-SEP-19 6S8Y 0 JRNL AUTH J.M.ALEX,V.CORVAGLIA,X.HU,S.ENGILBERGE,I.HUC,P.B.CROWLEY JRNL TITL CRYSTAL STRUCTURE OF A PROTEIN-AROMATIC FOLDAMER COMPOSITE: JRNL TITL 2 MACROMOLECULAR CHIRAL RESOLUTION. JRNL REF CHEM.COMMUN.(CAMB.) V. 55 11087 2019 JRNL REFN ESSN 1364-548X JRNL PMID 31460523 JRNL DOI 10.1039/C9CC05330A REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 498 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 24 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.12 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 442 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2581 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 416 REMARK 3 BIN R VALUE (WORKING SET) : 0.2495 REMARK 3 BIN FREE R VALUE : 0.3763 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.88 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 26 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 841 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 334 REMARK 3 SOLVENT ATOMS : 26 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.19530 REMARK 3 B22 (A**2) : -3.19530 REMARK 3 B33 (A**2) : 6.39060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.340 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.258 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.204 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.238 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.197 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 1398 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 1993 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 413 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 214 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 1398 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 108 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 1294 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.52 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.31 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.61 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A -4 A 103 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8335 4.2141 16.9803 REMARK 3 T TENSOR REMARK 3 T11: -0.2727 T22: 0.0341 REMARK 3 T33: -0.1721 T12: 0.0093 REMARK 3 T13: -0.0016 T23: -0.1303 REMARK 3 L TENSOR REMARK 3 L11: 6.1235 L22: 6.9044 REMARK 3 L33: 9.9693 L12: 1.9990 REMARK 3 L13: 1.0483 L23: 2.0776 REMARK 3 S TENSOR REMARK 3 S11: -0.1821 S12: -0.0240 S13: 0.5963 REMARK 3 S21: -0.4808 S22: -0.0546 S23: 0.2037 REMARK 3 S31: -0.3181 S32: -0.8638 S33: 0.2367 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: A 206 A 208 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0910 -25.1466 26.4268 REMARK 3 T TENSOR REMARK 3 T11: -0.2210 T22: -0.2478 REMARK 3 T33: -0.1368 T12: -0.0699 REMARK 3 T13: 0.0513 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 4.4472 L22: 15.5345 REMARK 3 L33: 9.6664 L12: -3.9806 REMARK 3 L13: 3.2229 L23: -7.5628 REMARK 3 S TENSOR REMARK 3 S11: 0.0710 S12: -0.1126 S13: -0.1396 REMARK 3 S21: 0.1562 S22: -0.3157 S23: -0.0811 REMARK 3 S31: 0.3037 S32: 0.3574 S33: 0.2446 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98009 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10590 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 62.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.24100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5LYC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 % PEG 3350, 100 MM SODIUM ACETATE PH REMARK 280 4.5, 200 MM ZINC ACETATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 124.91067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.45533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.45533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 124.91067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 203 LIES ON A SPECIAL POSITION. REMARK 375 C ACT A 205 LIES ON A SPECIAL POSITION. REMARK 375 CH3 ACT A 205 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 -132.34 -126.49 REMARK 500 ASN A 70 97.58 -161.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 18 NE2 REMARK 620 2 HEC A 201 NA 89.9 REMARK 620 3 HEC A 201 NB 87.1 93.1 REMARK 620 4 HEC A 201 NC 86.8 175.3 90.1 REMARK 620 5 HEC A 201 ND 86.6 89.4 173.2 87.1 REMARK 620 6 MET A 80 SD 176.8 87.5 94.9 95.7 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 NE2 REMARK 620 2 GLU A 103 OXT 83.9 REMARK 620 3 ACT A 204 O 104.2 158.6 REMARK 620 4 ACT A 204 OXT 94.1 98.5 61.6 REMARK 620 5 HOH A 319 O 93.5 104.9 94.6 156.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 NE2 REMARK 620 2 HIS A 39 NE2 0.0 REMARK 620 3 ACT A 205 O 106.4 106.4 REMARK 620 4 ACT A 205 OXT 121.5 121.5 64.5 REMARK 620 5 ACT A 205 OXT 104.8 104.8 2.9 67.4 REMARK 620 6 ACT A 205 O 121.4 121.4 61.5 2.9 64.4 REMARK 620 7 HOH A 301 O 96.7 96.7 130.9 66.5 133.8 69.4 REMARK 620 8 HOH A 301 O 73.6 73.6 69.0 133.4 66.1 130.5 160.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 208 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 L0T A 206 O9 REMARK 620 2 L0T A 207 O22 167.5 REMARK 620 3 L0T A 207 O33 109.1 81.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L0T A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L0T A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 208 DBREF 6S8Y A -4 103 UNP P00044 CYC1_YEAST 3 109 SEQADV 6S8Y THR A 102 UNP P00044 CYS 108 CONFLICT SEQRES 1 A 107 GLU PHE LYS ALA GLY SER ALA LYS LYS GLY ALA THR LEU SEQRES 2 A 107 PHE LYS THR ARG CYS LEU GLN CYS HIS THR VAL GLU LYS SEQRES 3 A 107 GLY GLY PRO HIS LYS VAL GLY PRO ASN LEU HIS GLY ILE SEQRES 4 A 107 PHE GLY ARG HIS SER GLY GLN ALA GLU GLY TYR SER TYR SEQRES 5 A 107 THR ASP ALA ASN ILE LYS LYS ASN VAL LEU TRP ASP GLU SEQRES 6 A 107 ASN ASN MET SER GLU TYR LEU THR ASN PRO LYS LYS TYR SEQRES 7 A 107 ILE PRO GLY THR LYS MET ALA PHE GLY GLY LEU LYS LYS SEQRES 8 A 107 GLU LYS ASP ARG ASN ASP LEU ILE THR TYR LEU LYS LYS SEQRES 9 A 107 ALA THR GLU HET HEC A 201 43 HET ZN A 202 1 HET ZN A 203 1 HET ACT A 204 7 HET ACT A 205 7 HET L0T A 206 280 HET L0T A 207 140 HET ZN A 208 1 HETNAM HEC HEME C HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETNAM L0T 8-ACETAMIDO-2-[[2-[[2-[[2-[[2-[[2-[[2-[(2-CARBOXY-4- HETNAM 2 L0T SULFONATO-QUINOLIN-8-YL)CARBAMOYL]-4-SULFONATO- HETNAM 3 L0T QUINOLIN-8-YL]CARBAMOYL]-4-SULFONATO-QUINOLIN-8- HETNAM 4 L0T YL]CARBAMOYL]-4-SULFONATO-QUINOLIN-8-YL]CARBAMOYL]-4- HETNAM 5 L0T SULFONATO-QUINOLIN-8-YL]CARBAMOYL]-4-SULFONATO- HETNAM 6 L0T QUINOLIN-8-YL]CARBAMOYL]-4-SULFONATO-QUINOLIN-8- HETNAM 7 L0T YL]CARBAMOYL]QUINOLINE-4-SULFONATE FORMUL 2 HEC C34 H34 FE N4 O4 FORMUL 3 ZN 3(ZN 2+) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 L0T 2(C82 H44 N16 O34 S8 8-) FORMUL 10 HOH *26(H2 O) HELIX 1 AA1 SER A 2 CYS A 14 1 13 HELIX 2 AA2 THR A 49 ASN A 56 1 8 HELIX 3 AA3 ASP A 60 ASN A 70 1 11 HELIX 4 AA4 ASN A 70 ILE A 75 1 6 HELIX 5 AA5 LYS A 87 THR A 102 1 16 LINK SG CYS A 14 CAB HEC A 201 1555 1555 1.82 LINK SG CYS A 17 CAC HEC A 201 1555 1555 1.90 LINK NE2 HIS A 18 FE HEC A 201 1555 1555 2.14 LINK NE2 HIS A 33 ZN ZN A 202 1555 1555 2.30 LINK NE2 HIS A 39 ZN ZN A 203 1555 1555 2.02 LINK NE2 HIS A 39 ZN ZN A 203 1555 4555 2.01 LINK SD MET A 80 FE HEC A 201 1555 1555 2.36 LINK OXT GLU A 103 ZN ZN A 202 1555 1555 2.05 LINK ZN ZN A 202 O ACT A 204 1555 1555 2.13 LINK ZN ZN A 202 OXT ACT A 204 1555 1555 2.18 LINK ZN ZN A 202 O HOH A 319 1555 1555 1.90 LINK ZN ZN A 203 O ACT A 205 1555 1555 2.05 LINK ZN ZN A 203 OXT ACT A 205 1555 1555 2.08 LINK ZN ZN A 203 OXT ACT A 205 1555 4555 2.09 LINK ZN ZN A 203 O ACT A 205 1555 4555 2.04 LINK ZN ZN A 203 O HOH A 301 1555 1555 1.96 LINK ZN ZN A 203 O HOH A 301 1555 4555 1.97 LINK O9 AL0T A 206 ZN ZN A 208 1555 1555 2.68 LINK O22 L0T A 207 ZN ZN A 208 1555 1555 2.50 LINK O33 L0T A 207 ZN ZN A 208 1555 1555 2.15 SITE 1 AC1 22 ARG A 13 CYS A 14 CYS A 17 HIS A 18 SITE 2 AC1 22 VAL A 28 GLY A 29 PRO A 30 ILE A 35 SITE 3 AC1 22 SER A 40 GLY A 41 TYR A 46 TYR A 48 SITE 4 AC1 22 THR A 49 ASN A 52 TRP A 59 MET A 64 SITE 5 AC1 22 TYR A 67 THR A 78 LYS A 79 MET A 80 SITE 6 AC1 22 PHE A 82 HOH A 305 SITE 1 AC2 4 HIS A 33 GLU A 103 ACT A 204 HOH A 319 SITE 1 AC3 3 HIS A 39 ACT A 205 HOH A 301 SITE 1 AC4 6 LYS A 22 HIS A 33 GLU A 103 ZN A 202 SITE 2 AC4 6 HOH A 306 HOH A 319 SITE 1 AC5 3 HIS A 39 ZN A 203 HOH A 301 SITE 1 AC6 10 LYS A 4 ASN A 70 LYS A 72 GLY A 83 SITE 2 AC6 10 LYS A 86 LYS A 100 L0T A 207 ZN A 208 SITE 3 AC6 10 HOH A 309 HOH A 314 SITE 1 AC7 15 LYS A 5 PRO A 25 HIS A 26 LYS A 27 SITE 2 AC7 15 THR A 69 ASN A 70 LYS A 73 LYS A 86 SITE 3 AC7 15 LYS A 87 LYS A 89 LYS A 100 L0T A 206 SITE 4 AC7 15 ZN A 208 HOH A 317 HOH A 321 SITE 1 AC8 2 L0T A 206 L0T A 207 CRYST1 39.138 39.138 187.366 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025551 0.014752 0.000000 0.00000 SCALE2 0.000000 0.029503 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005337 0.00000