HEADER TRANSFERASE 11-JUL-19 6S98 TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF UBE2S WT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 S; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: E2 UBIQUITIN-CONJUGATING ENZYME S,E2-EPF,UBIQUITIN CARRIER COMPND 5 PROTEIN S,UBIQUITIN-CONJUGATING ENZYME E2-24 KDA,UBIQUITIN- COMPND 6 CONJUGATING ENZYME E2-EPF5,UBIQUITIN-PROTEIN LIGASE S; COMPND 7 EC: 2.3.2.23; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2S, E2EPF, OK/SW-CL.73; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN E2, CATALYTIC DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.L.LIESS,S.LORENZ REVDAT 3 24-JAN-24 6S98 1 REMARK REVDAT 2 04-NOV-20 6S98 1 JRNL REVDAT 1 21-OCT-20 6S98 0 JRNL AUTH A.K.L.LIESS,A.KUCEROVA,K.SCHWEIMER,D.SCHLESINGER,O.DYBKOV, JRNL AUTH 2 H.URLAUB,J.MANSFELD,S.LORENZ JRNL TITL DIMERIZATION REGULATES THE HUMAN APC/C-ASSOCIATED JRNL TITL 2 UBIQUITIN-CONJUGATING ENZYME UBE2S. JRNL REF SCI.SIGNAL. V. 13 2020 JRNL REFN ESSN 1937-9145 JRNL PMID 33082289 JRNL DOI 10.1126/SCISIGNAL.ABA8208 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 43482 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 2091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.1500 - 3.8200 0.99 2838 159 0.1490 0.1586 REMARK 3 2 3.8200 - 3.0300 0.99 2735 180 0.1469 0.1760 REMARK 3 3 3.0300 - 2.6500 1.00 2754 172 0.1602 0.1721 REMARK 3 4 2.6500 - 2.4100 0.99 2793 132 0.1521 0.1891 REMARK 3 5 2.4100 - 2.2400 1.00 2732 140 0.1486 0.2047 REMARK 3 6 2.2400 - 2.1000 1.00 2778 146 0.1507 0.1769 REMARK 3 7 2.1000 - 2.0000 1.00 2750 152 0.1551 0.1908 REMARK 3 8 2.0000 - 1.9100 1.00 2798 127 0.1697 0.2066 REMARK 3 9 1.9100 - 1.8400 1.00 2738 132 0.1774 0.1832 REMARK 3 10 1.8400 - 1.7700 1.00 2764 134 0.1832 0.2193 REMARK 3 11 1.7700 - 1.7200 0.99 2758 113 0.1959 0.2346 REMARK 3 12 1.7200 - 1.6700 0.99 2725 126 0.1958 0.1893 REMARK 3 13 1.6700 - 1.6300 0.99 2770 122 0.2132 0.2453 REMARK 3 14 1.6300 - 1.5900 0.99 2723 140 0.2398 0.2651 REMARK 3 15 1.5900 - 1.5500 0.99 2735 116 0.2679 0.2917 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.152 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.852 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.76 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2431 REMARK 3 ANGLE : 1.341 3314 REMARK 3 CHIRALITY : 0.067 376 REMARK 3 PLANARITY : 0.010 430 REMARK 3 DIHEDRAL : 13.962 1470 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5277 -9.4361 -23.6337 REMARK 3 T TENSOR REMARK 3 T11: 0.5697 T22: 0.2524 REMARK 3 T33: 0.4552 T12: -0.0541 REMARK 3 T13: 0.1076 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 7.9958 L22: 4.3156 REMARK 3 L33: 6.3914 L12: 2.0302 REMARK 3 L13: -0.7459 L23: 2.0823 REMARK 3 S TENSOR REMARK 3 S11: -0.3053 S12: 0.7180 S13: -0.7173 REMARK 3 S21: -0.5242 S22: 0.0018 S23: -0.3578 REMARK 3 S31: 1.3229 S32: -0.2128 S33: 0.3090 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1636 6.0380 -19.0339 REMARK 3 T TENSOR REMARK 3 T11: 0.1067 T22: 0.1716 REMARK 3 T33: 0.1591 T12: -0.0020 REMARK 3 T13: -0.0121 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.3020 L22: 2.4426 REMARK 3 L33: 3.0717 L12: 0.0906 REMARK 3 L13: -1.2135 L23: 1.0864 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: 0.1017 S13: -0.1190 REMARK 3 S21: 0.0381 S22: -0.0706 S23: 0.0601 REMARK 3 S31: 0.1878 S32: -0.2254 S33: 0.0409 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0546 6.1499 -29.2868 REMARK 3 T TENSOR REMARK 3 T11: 0.0880 T22: 0.1372 REMARK 3 T33: 0.1040 T12: -0.0106 REMARK 3 T13: -0.0121 T23: -0.0386 REMARK 3 L TENSOR REMARK 3 L11: 8.8978 L22: 6.7515 REMARK 3 L33: 7.8894 L12: 5.1907 REMARK 3 L13: -2.6566 L23: 0.2001 REMARK 3 S TENSOR REMARK 3 S11: -0.0080 S12: 0.1284 S13: 0.3937 REMARK 3 S21: -0.1320 S22: -0.0890 S23: -0.0014 REMARK 3 S31: -0.3288 S32: -0.2001 S33: 0.0730 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1535 19.2444 -17.2578 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.1370 REMARK 3 T33: 0.2197 T12: 0.0275 REMARK 3 T13: 0.0374 T23: -0.0041 REMARK 3 L TENSOR REMARK 3 L11: 3.2962 L22: 1.3486 REMARK 3 L33: 2.9986 L12: 1.2130 REMARK 3 L13: -1.4325 L23: -0.4752 REMARK 3 S TENSOR REMARK 3 S11: 0.3086 S12: -0.0359 S13: 0.6898 REMARK 3 S21: 0.0930 S22: -0.0181 S23: 0.0963 REMARK 3 S31: -0.5576 S32: -0.1572 S33: -0.1958 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9008 10.7683 6.9221 REMARK 3 T TENSOR REMARK 3 T11: 0.3753 T22: 0.4315 REMARK 3 T33: 0.2208 T12: 0.1351 REMARK 3 T13: 0.0241 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 4.8445 L22: 7.7248 REMARK 3 L33: 6.5042 L12: -0.6988 REMARK 3 L13: 1.2418 L23: 5.0194 REMARK 3 S TENSOR REMARK 3 S11: -0.3099 S12: -0.5343 S13: 0.3973 REMARK 3 S21: 0.7289 S22: 0.4562 S23: -0.1499 REMARK 3 S31: 0.7891 S32: 0.1915 S33: -0.1982 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9933 2.1508 -6.6174 REMARK 3 T TENSOR REMARK 3 T11: 0.3443 T22: 0.3658 REMARK 3 T33: 0.2448 T12: -0.0599 REMARK 3 T13: 0.0000 T23: 0.1320 REMARK 3 L TENSOR REMARK 3 L11: 5.8951 L22: 6.9813 REMARK 3 L33: 7.8535 L12: 1.9122 REMARK 3 L13: -5.8382 L23: -0.8976 REMARK 3 S TENSOR REMARK 3 S11: -0.1097 S12: -1.0474 S13: -1.0377 REMARK 3 S21: 0.2049 S22: 0.1082 S23: -0.2140 REMARK 3 S31: 1.4489 S32: -0.3857 S33: 0.0945 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5574 7.7067 -10.1248 REMARK 3 T TENSOR REMARK 3 T11: 0.1058 T22: 0.2402 REMARK 3 T33: 0.1616 T12: 0.0275 REMARK 3 T13: -0.0083 T23: 0.0339 REMARK 3 L TENSOR REMARK 3 L11: 2.7743 L22: 3.2911 REMARK 3 L33: 4.9778 L12: 0.6972 REMARK 3 L13: 1.9264 L23: 2.0841 REMARK 3 S TENSOR REMARK 3 S11: 0.0953 S12: -0.5522 S13: -0.1714 REMARK 3 S21: 0.4393 S22: 0.0676 S23: -0.2152 REMARK 3 S31: 0.5506 S32: -0.0128 S33: -0.2035 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4006 10.6667 -10.3503 REMARK 3 T TENSOR REMARK 3 T11: 0.1914 T22: 0.2701 REMARK 3 T33: 0.2186 T12: 0.0480 REMARK 3 T13: -0.0190 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 1.3028 L22: 7.9667 REMARK 3 L33: 5.4265 L12: 1.3547 REMARK 3 L13: 0.9565 L23: 6.6017 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: -0.4101 S13: -0.2289 REMARK 3 S21: 0.5644 S22: 0.2313 S23: -0.0678 REMARK 3 S31: 0.4043 S32: 0.2314 S33: -0.3910 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 66 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4744 18.4671 -7.3172 REMARK 3 T TENSOR REMARK 3 T11: 0.1544 T22: 0.2191 REMARK 3 T33: 0.2002 T12: -0.0007 REMARK 3 T13: -0.0155 T23: -0.0630 REMARK 3 L TENSOR REMARK 3 L11: 3.0137 L22: 1.8241 REMARK 3 L33: 7.4016 L12: -0.5933 REMARK 3 L13: -1.3785 L23: 1.3167 REMARK 3 S TENSOR REMARK 3 S11: -0.0598 S12: -0.5507 S13: 0.4501 REMARK 3 S21: 0.2397 S22: 0.1924 S23: -0.0931 REMARK 3 S31: -0.3431 S32: 0.2678 S33: -0.2329 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5258 20.1326 -17.4815 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.1183 REMARK 3 T33: 0.1698 T12: -0.0429 REMARK 3 T13: 0.0132 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 5.4234 L22: 5.0167 REMARK 3 L33: 8.3216 L12: -4.8389 REMARK 3 L13: 2.1628 L23: -2.2620 REMARK 3 S TENSOR REMARK 3 S11: -0.2513 S12: -0.1755 S13: 0.5576 REMARK 3 S21: 0.2581 S22: -0.0493 S23: -0.2155 REMARK 3 S31: -0.3196 S32: 0.1114 S33: 0.1585 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 96 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3264 21.4634 -5.9456 REMARK 3 T TENSOR REMARK 3 T11: 0.2369 T22: 0.3101 REMARK 3 T33: 0.2116 T12: 0.0227 REMARK 3 T13: 0.0050 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 4.0094 L22: 6.3912 REMARK 3 L33: 5.0914 L12: -2.7562 REMARK 3 L13: 4.1403 L23: -1.0112 REMARK 3 S TENSOR REMARK 3 S11: -0.1852 S12: -0.1166 S13: -0.0250 REMARK 3 S21: -0.0314 S22: 0.4699 S23: -0.0789 REMARK 3 S31: -0.4156 S32: -0.1240 S33: -0.2365 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8532 11.6802 -10.8642 REMARK 3 T TENSOR REMARK 3 T11: 0.0865 T22: 0.1511 REMARK 3 T33: 0.1328 T12: -0.0015 REMARK 3 T13: 0.0068 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 4.8038 L22: 3.3121 REMARK 3 L33: 7.7392 L12: -1.2328 REMARK 3 L13: 2.5009 L23: 0.2160 REMARK 3 S TENSOR REMARK 3 S11: -0.0945 S12: -0.5633 S13: -0.1470 REMARK 3 S21: 0.2617 S22: 0.1053 S23: -0.0006 REMARK 3 S31: 0.1148 S32: -0.1565 S33: 0.0200 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2602 16.4900 -27.5353 REMARK 3 T TENSOR REMARK 3 T11: 0.1042 T22: 0.1011 REMARK 3 T33: 0.1321 T12: -0.0438 REMARK 3 T13: 0.0146 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 3.0908 L22: 1.5396 REMARK 3 L33: 3.2697 L12: -0.8542 REMARK 3 L13: 0.1712 L23: -0.4828 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: 0.1753 S13: 0.1931 REMARK 3 S21: -0.1045 S22: -0.0156 S23: -0.0852 REMARK 3 S31: -0.1901 S32: 0.1693 S33: -0.0372 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.968 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43484 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 42.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.02539 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42990 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZDN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM-ACETATE-TRIHYDRATE; 0.1 M REMARK 280 TRIS; 30% PEG4000, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.52500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 ASN A 4 REMARK 465 VAL A 5 REMARK 465 GLU A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 SER B 3 REMARK 465 ASN B 4 REMARK 465 VAL B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 132 HH21 ARG B 147 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 127 50.74 -119.57 REMARK 500 ASN A 140 64.11 -155.20 REMARK 500 ASN B 140 70.83 -157.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 202 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 98 O REMARK 620 2 HOH A 369 O 114.9 REMARK 620 3 HOH B 365 O 111.7 132.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 203 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 121 O REMARK 620 2 HOH A 301 O 136.7 REMARK 620 3 HOH A 352 O 83.7 124.8 REMARK 620 4 HOH B 361 O 81.1 132.0 77.9 REMARK 620 5 HOH B 387 O 115.5 60.6 146.0 77.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 201 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 123 O REMARK 620 2 ASN A 124 OD1 86.9 REMARK 620 3 PRO B 123 O 177.0 93.5 REMARK 620 4 ASN B 124 OD1 93.5 164.0 86.9 REMARK 620 5 HOH B 345 O 89.1 98.4 87.9 97.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ZDN RELATED DB: PDB REMARK 900 RELATED ID: 6QHK RELATED DB: PDB REMARK 900 RELATED ID: 6QH3 RELATED DB: PDB REMARK 900 RELATED ID: 6S96 RELATED DB: PDB DBREF 6S98 A 1 156 UNP Q16763 UBE2S_HUMAN 1 156 DBREF 6S98 B 1 156 UNP Q16763 UBE2S_HUMAN 1 156 SEQRES 1 A 156 MET ASN SER ASN VAL GLU ASN LEU PRO PRO HIS ILE ILE SEQRES 2 A 156 ARG LEU VAL TYR LYS GLU VAL THR THR LEU THR ALA ASP SEQRES 3 A 156 PRO PRO ASP GLY ILE LYS VAL PHE PRO ASN GLU GLU ASP SEQRES 4 A 156 LEU THR ASP LEU GLN VAL THR ILE GLU GLY PRO GLU GLY SEQRES 5 A 156 THR PRO TYR ALA GLY GLY LEU PHE ARG MET LYS LEU LEU SEQRES 6 A 156 LEU GLY LYS ASP PHE PRO ALA SER PRO PRO LYS GLY TYR SEQRES 7 A 156 PHE LEU THR LYS ILE PHE HIS PRO ASN VAL GLY ALA ASN SEQRES 8 A 156 GLY GLU ILE OCS VAL ASN VAL LEU LYS ARG ASP TRP THR SEQRES 9 A 156 ALA GLU LEU GLY ILE ARG HIS VAL LEU LEU THR ILE LYS SEQRES 10 A 156 CYS LEU LEU ILE HIS PRO ASN PRO GLU SER ALA LEU ASN SEQRES 11 A 156 GLU GLU ALA GLY ARG LEU LEU LEU GLU ASN TYR GLU GLU SEQRES 12 A 156 TYR ALA ALA ARG ALA ARG LEU LEU THR GLU ILE HIS GLY SEQRES 1 B 156 MET ASN SER ASN VAL GLU ASN LEU PRO PRO HIS ILE ILE SEQRES 2 B 156 ARG LEU VAL TYR LYS GLU VAL THR THR LEU THR ALA ASP SEQRES 3 B 156 PRO PRO ASP GLY ILE LYS VAL PHE PRO ASN GLU GLU ASP SEQRES 4 B 156 LEU THR ASP LEU GLN VAL THR ILE GLU GLY PRO GLU GLY SEQRES 5 B 156 THR PRO TYR ALA GLY GLY LEU PHE ARG MET LYS LEU LEU SEQRES 6 B 156 LEU GLY LYS ASP PHE PRO ALA SER PRO PRO LYS GLY TYR SEQRES 7 B 156 PHE LEU THR LYS ILE PHE HIS PRO ASN VAL GLY ALA ASN SEQRES 8 B 156 GLY GLU ILE OCS VAL ASN VAL LEU LYS ARG ASP TRP THR SEQRES 9 B 156 ALA GLU LEU GLY ILE ARG HIS VAL LEU LEU THR ILE LYS SEQRES 10 B 156 CYS LEU LEU ILE HIS PRO ASN PRO GLU SER ALA LEU ASN SEQRES 11 B 156 GLU GLU ALA GLY ARG LEU LEU LEU GLU ASN TYR GLU GLU SEQRES 12 B 156 TYR ALA ALA ARG ALA ARG LEU LEU THR GLU ILE HIS GLY MODRES 6S98 OCS A 95 CYS MODIFIED RESIDUE MODRES 6S98 OCS B 95 CYS MODIFIED RESIDUE HET OCS A 95 13 HET OCS B 95 13 HET NA A 201 1 HET NA A 202 1 HET NA A 203 1 HET EDO A 204 10 HET ACT A 205 7 HET EDO B 201 10 HET ACT B 202 7 HETNAM OCS CYSTEINESULFONIC ACID HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 OCS 2(C3 H7 N O5 S) FORMUL 3 NA 3(NA 1+) FORMUL 6 EDO 2(C2 H6 O2) FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 10 HOH *171(H2 O) HELIX 1 AA1 PRO A 9 ASP A 26 1 18 HELIX 2 AA2 OCS A 95 ARG A 101 1 7 HELIX 3 AA3 GLY A 108 HIS A 122 1 15 HELIX 4 AA4 ASN A 124 ALA A 128 5 5 HELIX 5 AA5 ASN A 130 ASN A 140 1 11 HELIX 6 AA6 ASN A 140 GLY A 156 1 17 HELIX 7 AA7 PRO B 9 ASP B 26 1 18 HELIX 8 AA8 OCS B 95 ARG B 101 1 7 HELIX 9 AA9 GLY B 108 HIS B 122 1 15 HELIX 10 AB1 ASN B 124 ALA B 128 5 5 HELIX 11 AB2 ASN B 130 ASN B 140 1 11 HELIX 12 AB3 ASN B 140 GLY B 156 1 17 SHEET 1 AA1 4 ILE A 31 PHE A 34 0 SHEET 2 AA1 4 ASP A 42 GLU A 48 -1 O GLN A 44 N PHE A 34 SHEET 3 AA1 4 LEU A 59 LEU A 65 -1 O PHE A 60 N ILE A 47 SHEET 4 AA1 4 LYS A 76 PHE A 79 -1 O LYS A 76 N LEU A 65 SHEET 1 AA2 4 ILE B 31 PHE B 34 0 SHEET 2 AA2 4 ASP B 42 GLU B 48 -1 O GLN B 44 N PHE B 34 SHEET 3 AA2 4 LEU B 59 LEU B 65 -1 O MET B 62 N VAL B 45 SHEET 4 AA2 4 LYS B 76 PHE B 79 -1 O LYS B 76 N LEU B 65 SSBOND 1 CYS A 118 CYS B 118 1555 1555 2.06 LINK C ILE A 94 N OCS A 95 1555 1555 1.33 LINK C OCS A 95 N VAL A 96 1555 1555 1.33 LINK C ILE B 94 N OCS B 95 1555 1555 1.31 LINK C OCS B 95 N VAL B 96 1555 1555 1.33 LINK O VAL A 98 NA NA A 202 1555 1555 2.78 LINK O ILE A 121 NA NA A 203 1555 1555 2.25 LINK O PRO A 123 NA NA A 201 1555 1555 2.30 LINK OD1 ASN A 124 NA NA A 201 1555 1555 2.24 LINK NA NA A 201 O PRO B 123 1555 1555 2.29 LINK NA NA A 201 OD1 ASN B 124 1555 1555 2.28 LINK NA NA A 201 O HOH B 345 1555 1555 2.45 LINK NA NA A 202 O HOH A 369 1555 1555 2.65 LINK NA NA A 202 O HOH B 365 1555 1555 2.74 LINK NA NA A 203 O HOH A 301 1555 1555 2.56 LINK NA NA A 203 O HOH A 352 1555 1555 2.42 LINK NA NA A 203 O HOH B 361 1555 1555 2.57 LINK NA NA A 203 O HOH B 387 1555 1555 2.31 CISPEP 1 PHE A 70 PRO A 71 0 12.80 CISPEP 2 PHE B 70 PRO B 71 0 5.50 SITE 1 AC1 6 HIS A 122 PRO A 123 ASN A 124 PRO B 123 SITE 2 AC1 6 ASN B 124 HOH B 345 SITE 1 AC2 5 VAL A 98 ARG A 101 HOH A 369 HIS B 122 SITE 2 AC2 5 HOH B 365 SITE 1 AC3 5 ILE A 121 HOH A 301 HOH A 352 HOH B 361 SITE 2 AC3 5 HOH B 387 SITE 1 AC4 1 HOH A 335 SITE 1 AC5 5 GLU A 51 HOH A 302 LEU B 107 GLY B 108 SITE 2 AC5 5 HIS B 111 SITE 1 AC6 4 LEU B 15 GLU B 19 PHE B 70 LEU B 107 SITE 1 AC7 5 LEU A 114 LYS A 117 ASP B 29 LEU B 114 SITE 2 AC7 5 LYS B 117 CRYST1 44.812 49.050 71.926 90.00 106.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022315 0.000000 0.006412 0.00000 SCALE2 0.000000 0.020387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014466 0.00000