HEADER GENE REGULATION 15-JUL-19 6S9S TITLE DIMERIZATION DOMAIN OF XENOPUS LAEVIS LDB1 IN COMPLEX WITH DARPIN 10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DARPIN 10; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIM DOMAIN-BINDING PROTEIN 1; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: XLDB1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; SOURCE 8 ORGANISM_COMMON: AFRICAN CLAWED FROG; SOURCE 9 ORGANISM_TAXID: 8355; SOURCE 10 GENE: LDB1; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WNT SIGNALLING, WNT ENHANCEOSOME, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR M.RENKO,J.V.SCHAEFER,A.PLUCKTHUN,M.BIENZ REVDAT 2 23-OCT-19 6S9S 1 JRNL REVDAT 1 09-OCT-19 6S9S 0 JRNL AUTH M.RENKO,M.FIEDLER,T.J.RUTHERFORD,J.V.SCHAEFER,A.PLUCKTHUN, JRNL AUTH 2 M.BIENZ JRNL TITL ROTATIONAL SYMMETRY OF THE STRUCTURED CHIP/LDB-SSDP CORE JRNL TITL 2 MODULE OF THE WNT ENHANCEOSOME. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 20977 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31570581 JRNL DOI 10.1073/PNAS.1912705116 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1147 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1575 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.4910 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.5080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 6 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : -4.09000 REMARK 3 B33 (A**2) : 3.43000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.218 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.294 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 29.332 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2663 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2433 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3608 ; 1.632 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5635 ; 1.269 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 323 ; 7.400 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;36.000 ;22.848 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 457 ;18.071 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.465 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2986 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 566 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2107 -7.3641 1.8463 REMARK 3 T TENSOR REMARK 3 T11: 0.6625 T22: 0.4531 REMARK 3 T33: 0.6093 T12: 0.0384 REMARK 3 T13: -0.0317 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 4.7434 L22: 9.3969 REMARK 3 L33: 10.3835 L12: 3.4715 REMARK 3 L13: 5.8251 L23: 8.3929 REMARK 3 S TENSOR REMARK 3 S11: -0.1765 S12: 0.3737 S13: 0.1618 REMARK 3 S21: -0.2809 S22: -0.1402 S23: -0.1378 REMARK 3 S31: -0.3872 S32: 0.3524 S33: 0.3167 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8285 -14.1611 11.4659 REMARK 3 T TENSOR REMARK 3 T11: 0.6907 T22: 0.4341 REMARK 3 T33: 0.6158 T12: -0.0241 REMARK 3 T13: -0.0222 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 0.9997 L22: 3.0726 REMARK 3 L33: 0.3399 L12: -0.3320 REMARK 3 L13: 0.4118 L23: -0.5554 REMARK 3 S TENSOR REMARK 3 S11: 0.0807 S12: -0.0958 S13: -0.2326 REMARK 3 S21: 0.0346 S22: 0.0648 S23: 0.2391 REMARK 3 S31: -0.0704 S32: 0.1595 S33: -0.1455 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): -17.6888 -15.0877 13.0185 REMARK 3 T TENSOR REMARK 3 T11: 0.6354 T22: 0.4304 REMARK 3 T33: 0.6506 T12: -0.0147 REMARK 3 T13: -0.0138 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 3.0697 L22: 3.0572 REMARK 3 L33: 5.1973 L12: -1.4559 REMARK 3 L13: 2.5506 L23: -2.1746 REMARK 3 S TENSOR REMARK 3 S11: 0.2209 S12: -0.2428 S13: -0.1689 REMARK 3 S21: 0.1997 S22: -0.0491 S23: 0.5073 REMARK 3 S31: -0.1991 S32: -0.0772 S33: -0.1717 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3713 1.5835 12.1823 REMARK 3 T TENSOR REMARK 3 T11: 0.7635 T22: 0.3054 REMARK 3 T33: 0.7057 T12: -0.1035 REMARK 3 T13: 0.0473 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 4.5064 L22: 0.1816 REMARK 3 L33: 1.7487 L12: -0.6445 REMARK 3 L13: 0.4204 L23: 0.2913 REMARK 3 S TENSOR REMARK 3 S11: 0.2576 S12: -0.4821 S13: 0.2334 REMARK 3 S21: -0.0150 S22: -0.0473 S23: -0.0839 REMARK 3 S31: -0.1494 S32: -0.2835 S33: -0.2102 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): -21.7749 -3.8689 5.5130 REMARK 3 T TENSOR REMARK 3 T11: 0.7114 T22: 0.4603 REMARK 3 T33: 0.6186 T12: 0.0307 REMARK 3 T13: 0.0862 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 6.1589 L22: 3.8951 REMARK 3 L33: 2.9742 L12: 1.9962 REMARK 3 L13: 4.1551 L23: 0.9976 REMARK 3 S TENSOR REMARK 3 S11: 0.2195 S12: 0.0090 S13: -0.2198 REMARK 3 S21: -0.0552 S22: 0.0355 S23: 0.0998 REMARK 3 S31: -0.1348 S32: -0.0616 S33: -0.2550 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 169 REMARK 3 ORIGIN FOR THE GROUP (A): -9.9907 -3.5691 14.5466 REMARK 3 T TENSOR REMARK 3 T11: 0.6719 T22: 0.5148 REMARK 3 T33: 0.4873 T12: -0.0337 REMARK 3 T13: 0.0051 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 12.5339 L22: 3.8293 REMARK 3 L33: 0.3067 L12: -2.0983 REMARK 3 L13: 0.0117 L23: -0.2533 REMARK 3 S TENSOR REMARK 3 S11: 0.3148 S12: -0.1476 S13: 0.5102 REMARK 3 S21: 0.1691 S22: -0.1308 S23: -0.1752 REMARK 3 S31: -0.1052 S32: 0.0809 S33: -0.1841 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 170 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): -39.7743 -5.0114 2.0088 REMARK 3 T TENSOR REMARK 3 T11: 0.6415 T22: 0.2294 REMARK 3 T33: 0.8290 T12: -0.0099 REMARK 3 T13: 0.0506 T23: -0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.9694 L22: 3.3504 REMARK 3 L33: 2.3472 L12: 1.3875 REMARK 3 L13: 1.3437 L23: -0.0894 REMARK 3 S TENSOR REMARK 3 S11: 0.2030 S12: -0.1968 S13: -0.0392 REMARK 3 S21: -0.0218 S22: -0.4614 S23: 0.4434 REMARK 3 S31: 0.0141 S32: 0.0911 S33: 0.2584 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 38 F 43 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1471 -34.4563 -0.4863 REMARK 3 T TENSOR REMARK 3 T11: 1.7212 T22: 0.9197 REMARK 3 T33: 1.8310 T12: -1.0218 REMARK 3 T13: -0.5263 T23: 0.6465 REMARK 3 L TENSOR REMARK 3 L11: 178.1637 L22: 35.8938 REMARK 3 L33: 2.4416 L12: -78.8558 REMARK 3 L13: 20.4025 L23: -8.7223 REMARK 3 S TENSOR REMARK 3 S11: -0.4709 S12: -0.4416 S13: 4.1153 REMARK 3 S21: -0.3755 S22: 0.0925 S23: -1.6982 REMARK 3 S31: -0.2299 S32: -0.1081 S33: 0.3784 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 44 F 78 REMARK 3 ORIGIN FOR THE GROUP (A): -2.0519 -35.8976 3.5495 REMARK 3 T TENSOR REMARK 3 T11: 0.7066 T22: 0.3016 REMARK 3 T33: 0.7923 T12: 0.0189 REMARK 3 T13: -0.0030 T23: 0.0673 REMARK 3 L TENSOR REMARK 3 L11: 1.5262 L22: 4.4483 REMARK 3 L33: 3.7690 L12: -1.6451 REMARK 3 L13: 0.1400 L23: 2.8702 REMARK 3 S TENSOR REMARK 3 S11: 0.2478 S12: -0.2775 S13: -0.1851 REMARK 3 S21: -0.5110 S22: 0.0451 S23: -0.2405 REMARK 3 S31: -0.3313 S32: -0.0738 S33: -0.2929 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 79 F 123 REMARK 3 ORIGIN FOR THE GROUP (A): -9.6505 -34.7917 12.5852 REMARK 3 T TENSOR REMARK 3 T11: 0.6843 T22: 0.3049 REMARK 3 T33: 0.7253 T12: -0.0087 REMARK 3 T13: -0.0515 T23: 0.0486 REMARK 3 L TENSOR REMARK 3 L11: 1.9572 L22: 3.6490 REMARK 3 L33: 1.1292 L12: -0.4729 REMARK 3 L13: -0.7879 L23: 0.5739 REMARK 3 S TENSOR REMARK 3 S11: 0.0574 S12: 0.1028 S13: -0.1575 REMARK 3 S21: 0.1997 S22: -0.1783 S23: 0.1233 REMARK 3 S31: 0.2255 S32: -0.0967 S33: 0.1209 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 124 F 131 REMARK 3 ORIGIN FOR THE GROUP (A): -11.6285 -40.6021 19.4081 REMARK 3 T TENSOR REMARK 3 T11: 0.7591 T22: 0.5970 REMARK 3 T33: 0.6534 T12: -0.1804 REMARK 3 T13: 0.0472 T23: 0.1115 REMARK 3 L TENSOR REMARK 3 L11: 7.3807 L22: 16.0297 REMARK 3 L33: 8.4759 L12: -8.1109 REMARK 3 L13: 7.8613 L23: -9.4637 REMARK 3 S TENSOR REMARK 3 S11: 0.3672 S12: -0.3418 S13: -0.4280 REMARK 3 S21: 0.2384 S22: 0.0307 S23: -0.1230 REMARK 3 S31: 0.3659 S32: -0.3765 S33: -0.3980 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 132 F 151 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9215 -26.0305 22.3649 REMARK 3 T TENSOR REMARK 3 T11: 0.7223 T22: 0.4696 REMARK 3 T33: 0.6647 T12: -0.0793 REMARK 3 T13: 0.0012 T23: 0.0768 REMARK 3 L TENSOR REMARK 3 L11: 1.1576 L22: 1.9021 REMARK 3 L33: 1.6831 L12: -1.2940 REMARK 3 L13: -1.2727 L23: 1.1640 REMARK 3 S TENSOR REMARK 3 S11: -0.0661 S12: -0.1451 S13: -0.0041 REMARK 3 S21: 0.3027 S22: 0.0797 S23: 0.1198 REMARK 3 S31: -0.0398 S32: -0.0248 S33: -0.0136 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 152 F 160 REMARK 3 ORIGIN FOR THE GROUP (A): -22.9627 -34.5197 22.4315 REMARK 3 T TENSOR REMARK 3 T11: 0.6585 T22: 0.4518 REMARK 3 T33: 0.8656 T12: -0.1701 REMARK 3 T13: 0.1244 T23: 0.0910 REMARK 3 L TENSOR REMARK 3 L11: 6.5369 L22: 1.9330 REMARK 3 L33: 20.2335 L12: 3.5064 REMARK 3 L13: -8.0758 L23: -3.6870 REMARK 3 S TENSOR REMARK 3 S11: -0.0877 S12: 0.1728 S13: 0.2313 REMARK 3 S21: 0.0087 S22: 0.0164 S23: 0.2046 REMARK 3 S31: 0.1718 S32: -0.6823 S33: 0.0713 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 161 F 193 REMARK 3 ORIGIN FOR THE GROUP (A): -20.9270 -23.5599 27.6405 REMARK 3 T TENSOR REMARK 3 T11: 0.6660 T22: 0.7585 REMARK 3 T33: 0.4964 T12: -0.0805 REMARK 3 T13: 0.1281 T23: 0.1120 REMARK 3 L TENSOR REMARK 3 L11: 4.0782 L22: 4.9375 REMARK 3 L33: 0.7697 L12: -3.0815 REMARK 3 L13: -1.3689 L23: 0.3932 REMARK 3 S TENSOR REMARK 3 S11: -0.1997 S12: -0.6394 S13: -0.1262 REMARK 3 S21: 0.5156 S22: 0.2603 S23: 0.4507 REMARK 3 S31: -0.0317 S32: -0.0333 S33: -0.0605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6S9S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103117. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980040 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22606 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 49.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX, SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 8.5 20% PEG 8K 0.2 M REMARK 280 LI2SO4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.98550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.98550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.75450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.55850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.75450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.55850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.98550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.75450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.55850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.98550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.75450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.55850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F 1 REMARK 465 ARG F 2 REMARK 465 GLY F 3 REMARK 465 SER F 4 REMARK 465 HIS F 5 REMARK 465 HIS F 6 REMARK 465 HIS F 7 REMARK 465 HIS F 8 REMARK 465 HIS F 9 REMARK 465 HIS F 10 REMARK 465 HIS F 11 REMARK 465 HIS F 12 REMARK 465 HIS F 13 REMARK 465 HIS F 14 REMARK 465 GLY F 15 REMARK 465 GLY F 16 REMARK 465 GLY F 17 REMARK 465 GLY F 18 REMARK 465 SER F 19 REMARK 465 TYR F 20 REMARK 465 PRO F 21 REMARK 465 TYR F 22 REMARK 465 ASP F 23 REMARK 465 VAL F 24 REMARK 465 PRO F 25 REMARK 465 ASP F 26 REMARK 465 TYR F 27 REMARK 465 ALA F 28 REMARK 465 LEU F 29 REMARK 465 GLU F 30 REMARK 465 VAL F 31 REMARK 465 LEU F 32 REMARK 465 PHE F 33 REMARK 465 GLN F 34 REMARK 465 GLY F 35 REMARK 465 PRO F 36 REMARK 465 GLY F 37 REMARK 465 ALA F 195 REMARK 465 LYS F 196 REMARK 465 LEU F 197 REMARK 465 ASN F 198 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 ILE A 21 REMARK 465 GLY A 22 REMARK 465 ARG A 23 REMARK 465 HIS A 24 REMARK 465 THR A 25 REMARK 465 PRO A 26 REMARK 465 TYR A 27 REMARK 465 GLY A 28 REMARK 465 ASN A 29 REMARK 465 GLY A 198 REMARK 465 LEU A 199 REMARK 465 SER A 200 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA F 50 8.45 -68.40 REMARK 500 LYS A 79 118.95 44.24 REMARK 500 ARG A 80 90.14 -170.13 REMARK 500 GLN A 125 65.46 -108.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 6S9S F 1 198 PDB 6S9S 6S9S 1 198 DBREF 6S9S A 20 200 UNP P70060 LDB1_XENLA 20 200 SEQADV 6S9S GLY A 17 UNP P70060 EXPRESSION TAG SEQADV 6S9S SER A 18 UNP P70060 EXPRESSION TAG SEQADV 6S9S SER A 19 UNP P70060 EXPRESSION TAG SEQRES 1 F 198 MET ARG GLY SER HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 2 F 198 HIS GLY GLY GLY GLY SER TYR PRO TYR ASP VAL PRO ASP SEQRES 3 F 198 TYR ALA LEU GLU VAL LEU PHE GLN GLY PRO GLY SER ASP SEQRES 4 F 198 LEU GLY LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN SEQRES 5 F 198 ASP ASP GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP SEQRES 6 F 198 VAL ASN ALA HIS ASP LYS ARG GLY HIS THR PRO LEU HIS SEQRES 7 F 198 LEU ALA ALA THR ASN GLY HIS LEU GLU ILE VAL GLU VAL SEQRES 8 F 198 LEU LEU LYS THR GLY ALA ASP VAL ASN ALA TYR ASP ARG SEQRES 9 F 198 THR GLY VAL THR PRO LEU HIS LEU ALA ALA MET TRP GLY SEQRES 10 F 198 HIS LEU GLU ILE VAL GLU VAL LEU LEU LYS ALA GLY ALA SEQRES 11 F 198 ASP VAL ASN ALA LEU ASP MET VAL GLY TYR THR PRO LEU SEQRES 12 F 198 HIS LEU ALA ALA TRP ASP GLY HIS LEU GLU ILE VAL GLU SEQRES 13 F 198 VAL LEU LEU LYS HIS GLY ALA ASP VAL ASN ALA GLN ASP SEQRES 14 F 198 LYS PHE GLY LYS THR PRO PHE ASP LEU ALA ILE ASP ASN SEQRES 15 F 198 GLY ASN GLU ASP ILE ALA GLU VAL LEU GLN LYS ALA ALA SEQRES 16 F 198 LYS LEU ASN SEQRES 1 A 184 GLY SER SER GLY ILE GLY ARG HIS THR PRO TYR GLY ASN SEQRES 2 A 184 GLN THR ASP TYR ARG ILE PHE GLU LEU ASN LYS ARG LEU SEQRES 3 A 184 GLN ASN TRP THR GLU GLU CYS ASP ASN LEU TRP TRP ASP SEQRES 4 A 184 ALA PHE THR THR GLU PHE PHE GLU ASP ASP ALA MET LEU SEQRES 5 A 184 THR ILE THR PHE CYS LEU GLU ASP GLY PRO LYS ARG TYR SEQRES 6 A 184 THR ILE GLY ARG THR LEU ILE PRO ARG TYR PHE ARG SER SEQRES 7 A 184 ILE PHE GLU GLY GLY ALA THR GLU LEU TYR TYR VAL LEU SEQRES 8 A 184 LYS HIS PRO LYS GLU SER PHE HIS ASN ASN PHE VAL SER SEQRES 9 A 184 LEU ASP CYS ASP GLN CYS THR MET VAL THR GLN HIS GLY SEQRES 10 A 184 LYS PRO MET PHE THR GLN VAL CYS VAL GLU GLY ARG LEU SEQRES 11 A 184 TYR LEU GLU PHE MET PHE ASP ASP MET MET ARG ILE LYS SEQRES 12 A 184 THR TRP HIS PHE SER ILE ARG GLN HIS ARG GLU LEU ILE SEQRES 13 A 184 PRO ARG SER ILE LEU ALA MET HIS ALA GLN ASP PRO GLN SEQRES 14 A 184 MET LEU ASP GLN LEU SER LYS ASN ILE THR ARG CYS GLY SEQRES 15 A 184 LEU SER FORMUL 3 HOH *6(H2 O) HELIX 1 AA1 SER F 38 ALA F 50 1 13 HELIX 2 AA2 GLN F 52 ASN F 62 1 11 HELIX 3 AA3 THR F 75 ASN F 83 1 9 HELIX 4 AA4 HIS F 85 THR F 95 1 11 HELIX 5 AA5 THR F 108 GLY F 117 1 10 HELIX 6 AA6 HIS F 118 ALA F 128 1 11 HELIX 7 AA7 THR F 141 GLY F 150 1 10 HELIX 8 AA8 HIS F 151 HIS F 161 1 11 HELIX 9 AA9 THR F 174 ASN F 182 1 9 HELIX 10 AB1 ASN F 184 GLN F 192 1 9 HELIX 11 AB2 THR A 31 LEU A 42 1 12 HELIX 12 AB3 GLN A 43 TRP A 45 5 3 HELIX 13 AB4 ASP A 50 PHE A 61 1 12 HELIX 14 AB5 LEU A 87 PHE A 96 1 10 HELIX 15 AB6 PRO A 173 HIS A 180 1 8 HELIX 16 AB7 ASP A 183 SER A 191 1 9 SHEET 1 AA1 6 ARG A 80 GLY A 84 0 SHEET 2 AA1 6 PHE A 62 THR A 71 -1 N LEU A 68 O ILE A 83 SHEET 3 AA1 6 ILE A 158 LEU A 171 1 O TRP A 161 N THR A 69 SHEET 4 AA1 6 THR A 138 MET A 151 -1 N TYR A 147 O HIS A 162 SHEET 5 AA1 6 PHE A 118 HIS A 132 -1 N THR A 130 O VAL A 140 SHEET 6 AA1 6 ALA A 100 LYS A 108 -1 N TYR A 104 O VAL A 129 SHEET 1 AA2 6 ARG A 80 GLY A 84 0 SHEET 2 AA2 6 PHE A 62 THR A 71 -1 N LEU A 68 O ILE A 83 SHEET 3 AA2 6 ILE A 158 LEU A 171 1 O TRP A 161 N THR A 69 SHEET 4 AA2 6 THR A 138 MET A 151 -1 N TYR A 147 O HIS A 162 SHEET 5 AA2 6 PHE A 118 HIS A 132 -1 N THR A 130 O VAL A 140 SHEET 6 AA2 6 LYS A 111 PHE A 114 -1 N SER A 113 O SER A 120 SSBOND 1 CYS A 73 CYS A 197 1555 1555 2.07 CISPEP 1 LYS A 134 PRO A 135 0 -0.14 CRYST1 79.509 117.117 93.971 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012577 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010642 0.00000