HEADER VIRUS LIKE PARTICLE 16-JUL-19 6SA9 TITLE ENDOGENOUS RETROVIRUS HML2 CAPSID NTD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGENOUS RETROVIRUS GROUP K MEMBER 9 POL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HERV-K(C6) GAG-POL PROTEIN,HERV-K109 GAG-POL PROTEIN,HERV- COMPND 5 K_6Q14.1 PROVIRUS ANCESTRAL GAG-POL POLYPROTEIN; COMPND 6 EC: 3.4.23.50,2.7.7.49,2.7.7.7,3.1.26.4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERVK-9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HML2 HERV-K ENDOGENOUS RETROVIRUS CAPSID CA, VIRUS LIKE PARTICLE EXPDTA X-RAY DIFFRACTION AUTHOR D.C.GOLDSTONE,N.J.BALL,I.A.TAYLOR REVDAT 1 01-JAN-20 6SA9 0 JRNL AUTH O.ACTON,T.GRANT,G.NICASTRO,N.J.BALL,D.C.GOLDSTONE, JRNL AUTH 2 L.E.ROBERTSON,K.SADER,A.NANS,A.RAMOS,J.P.STOYE,I.A.TAYLOR, JRNL AUTH 3 P.B.ROSENTHAL JRNL TITL STRUCTURAL BASIS FOR FULLERENE GEOMETRY IN A HUMAN JRNL TITL 2 ENDOGENOUS RETROVIRUS CAPSID. JRNL REF NAT COMMUN V. 10 5822 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31862888 JRNL DOI 10.1038/S41467-019-13786-Y REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 26828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7300 - 3.8735 0.98 2759 145 0.1572 0.1673 REMARK 3 2 3.8735 - 3.0764 0.97 2694 147 0.1414 0.1738 REMARK 3 3 3.0764 - 2.6880 0.96 2651 143 0.1558 0.2205 REMARK 3 4 2.6880 - 2.4425 0.95 2621 137 0.1536 0.1904 REMARK 3 5 2.4425 - 2.2676 0.94 2635 148 0.1572 0.2011 REMARK 3 6 2.2676 - 2.1340 0.93 2536 145 0.1548 0.1916 REMARK 3 7 2.1340 - 2.0271 0.93 2573 131 0.1464 0.2134 REMARK 3 8 2.0271 - 1.9389 0.92 2517 128 0.1473 0.2119 REMARK 3 9 1.9389 - 1.8643 0.91 2511 141 0.1548 0.2216 REMARK 3 10 1.8643 - 1.8000 0.71 1964 102 0.1673 0.2232 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 58.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.99750 REMARK 3 B22 (A**2) : 3.36610 REMARK 3 B33 (A**2) : -1.74350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -6.19270 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2355 REMARK 3 ANGLE : 0.977 3212 REMARK 3 CHIRALITY : 0.067 343 REMARK 3 PLANARITY : 0.004 416 REMARK 3 DIHEDRAL : 16.603 918 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:31) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3189 -0.3113 10.7356 REMARK 3 T TENSOR REMARK 3 T11: 0.4047 T22: 0.1302 REMARK 3 T33: 0.2124 T12: 0.0192 REMARK 3 T13: 0.0074 T23: 0.0321 REMARK 3 L TENSOR REMARK 3 L11: 0.3696 L22: -0.8869 REMARK 3 L33: 0.5508 L12: -0.3552 REMARK 3 L13: -0.0950 L23: 0.4674 REMARK 3 S TENSOR REMARK 3 S11: 0.1711 S12: 0.0303 S13: 0.0080 REMARK 3 S21: -0.2329 S22: -0.1330 S23: -0.1309 REMARK 3 S31: -0.3203 S32: -0.0010 S33: -0.0406 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 32:38) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7452 0.6382 25.9358 REMARK 3 T TENSOR REMARK 3 T11: 0.1387 T22: 0.0233 REMARK 3 T33: 0.0699 T12: -0.0312 REMARK 3 T13: -0.0065 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.6876 L22: 1.1749 REMARK 3 L33: 0.5969 L12: 0.4941 REMARK 3 L13: 0.2583 L23: 0.2153 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.0411 S13: 0.0749 REMARK 3 S21: -0.2436 S22: -0.0364 S23: 0.2972 REMARK 3 S31: -0.2277 S32: 0.0376 S33: 0.0009 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 39:51) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7826 -4.4330 33.4059 REMARK 3 T TENSOR REMARK 3 T11: 0.2423 T22: 0.2571 REMARK 3 T33: 0.1641 T12: 0.0041 REMARK 3 T13: 0.0812 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.0735 L22: 0.0035 REMARK 3 L33: 0.1167 L12: 0.0262 REMARK 3 L13: -0.0739 L23: -0.0318 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: -0.0772 S13: -0.0243 REMARK 3 S21: -0.0086 S22: 0.0094 S23: -0.0072 REMARK 3 S31: -0.0421 S32: 0.2343 S33: 0.0089 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 52:70) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6169 -5.9016 18.9950 REMARK 3 T TENSOR REMARK 3 T11: 0.2162 T22: 0.0730 REMARK 3 T33: 0.1789 T12: 0.0219 REMARK 3 T13: 0.0821 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.2486 L22: -1.0135 REMARK 3 L33: 0.2346 L12: 0.0747 REMARK 3 L13: 0.0154 L23: 0.0848 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.0029 S13: 0.1344 REMARK 3 S21: -0.0114 S22: 0.0168 S23: -0.0120 REMARK 3 S31: -0.1713 S32: -0.0259 S33: -0.0503 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 71:96) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4144 -17.3521 23.2444 REMARK 3 T TENSOR REMARK 3 T11: 0.1489 T22: 0.0634 REMARK 3 T33: 0.1589 T12: 0.0056 REMARK 3 T13: 0.0529 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.6071 L22: 0.3222 REMARK 3 L33: 0.3551 L12: 0.4655 REMARK 3 L13: 0.3977 L23: 0.4927 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: -0.0159 S13: -0.1164 REMARK 3 S21: 0.0854 S22: 0.0733 S23: -0.0683 REMARK 3 S31: -0.0537 S32: -0.0213 S33: -0.1004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 97:107) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3144 -26.1500 12.3889 REMARK 3 T TENSOR REMARK 3 T11: 0.1081 T22: 0.1289 REMARK 3 T33: 0.2787 T12: -0.0260 REMARK 3 T13: 0.0484 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 0.6692 L22: 0.5505 REMARK 3 L33: 2.3363 L12: -0.0951 REMARK 3 L13: 0.9593 L23: -0.8364 REMARK 3 S TENSOR REMARK 3 S11: 0.0718 S12: -0.0503 S13: -0.4023 REMARK 3 S21: -0.0261 S22: 0.2128 S23: 0.0786 REMARK 3 S31: -0.0159 S32: -0.1727 S33: -0.2819 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 108:145) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1896 -15.0268 11.9219 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: -0.0478 REMARK 3 T33: 0.0182 T12: 0.0285 REMARK 3 T13: 0.1006 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.0067 L22: 0.0282 REMARK 3 L33: 0.0069 L12: -0.0089 REMARK 3 L13: -0.0014 L23: 0.0055 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: 0.0035 S13: -0.0154 REMARK 3 S21: -0.0141 S22: 0.0227 S23: 0.0224 REMARK 3 S31: -0.0219 S32: -0.0110 S33: 0.0020 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 146:152) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6465 -15.3028 33.6615 REMARK 3 T TENSOR REMARK 3 T11: 0.3982 T22: 0.4275 REMARK 3 T33: 0.2694 T12: 0.0167 REMARK 3 T13: 0.0070 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: -3.2474 L22: -0.5992 REMARK 3 L33: -1.1778 L12: 0.1719 REMARK 3 L13: 2.8994 L23: 0.7399 REMARK 3 S TENSOR REMARK 3 S11: 0.3122 S12: 0.2130 S13: 0.0292 REMARK 3 S21: -0.0926 S22: -0.2099 S23: -0.0191 REMARK 3 S31: 0.6397 S32: 0.0609 S33: -0.1056 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 1:31) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0462 3.5754 8.7729 REMARK 3 T TENSOR REMARK 3 T11: 0.2555 T22: 0.1250 REMARK 3 T33: 0.1212 T12: 0.0459 REMARK 3 T13: 0.0437 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.3159 L22: 0.9909 REMARK 3 L33: 0.3837 L12: -1.2376 REMARK 3 L13: 1.0920 L23: 0.7419 REMARK 3 S TENSOR REMARK 3 S11: 0.2745 S12: 0.2255 S13: -0.0919 REMARK 3 S21: -0.0527 S22: -0.0522 S23: 0.1669 REMARK 3 S31: -0.3663 S32: 0.1199 S33: -0.2248 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 32:38) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5974 2.2777 26.8739 REMARK 3 T TENSOR REMARK 3 T11: 0.2379 T22: 0.0726 REMARK 3 T33: 0.1279 T12: 0.0136 REMARK 3 T13: 0.1071 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 0.0388 L22: 0.6529 REMARK 3 L33: -0.4686 L12: -0.2811 REMARK 3 L13: 0.2716 L23: 0.3587 REMARK 3 S TENSOR REMARK 3 S11: -0.0413 S12: -0.0140 S13: -0.0791 REMARK 3 S21: 0.0416 S22: 0.0605 S23: 0.0007 REMARK 3 S31: -0.1016 S32: -0.0060 S33: -0.0110 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 39:51) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3690 6.5978 32.1248 REMARK 3 T TENSOR REMARK 3 T11: 0.3415 T22: 0.1523 REMARK 3 T33: 0.1893 T12: 0.0401 REMARK 3 T13: 0.0462 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 0.6080 L22: -0.3258 REMARK 3 L33: 0.4931 L12: 0.4189 REMARK 3 L13: -0.4277 L23: -0.3881 REMARK 3 S TENSOR REMARK 3 S11: -0.0917 S12: -0.0365 S13: -0.0593 REMARK 3 S21: -0.0720 S22: 0.0208 S23: -0.0041 REMARK 3 S31: 0.1487 S32: 0.0213 S33: 0.0637 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 52:70) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0078 9.1430 16.8106 REMARK 3 T TENSOR REMARK 3 T11: 0.1771 T22: 0.0766 REMARK 3 T33: 0.1834 T12: 0.0434 REMARK 3 T13: 0.0320 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: -0.0222 L22: 0.0142 REMARK 3 L33: 0.0893 L12: 0.0374 REMARK 3 L13: -0.0364 L23: 0.0944 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: -0.0186 S13: 0.0308 REMARK 3 S21: 0.1159 S22: 0.0712 S23: -0.0281 REMARK 3 S31: 0.0106 S32: 0.0233 S33: -0.0484 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 71:96) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2842 20.4260 24.0772 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.0947 REMARK 3 T33: 0.1601 T12: 0.0240 REMARK 3 T13: 0.0534 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.0736 L22: -0.0197 REMARK 3 L33: 0.1848 L12: -0.0329 REMARK 3 L13: -0.0841 L23: 0.1749 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: -0.0446 S13: 0.0430 REMARK 3 S21: 0.1276 S22: 0.0591 S23: -0.0111 REMARK 3 S31: 0.1404 S32: 0.0457 S33: 0.0078 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 97:107) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7690 30.9676 7.6402 REMARK 3 T TENSOR REMARK 3 T11: 0.1710 T22: 0.1970 REMARK 3 T33: 0.1934 T12: -0.0649 REMARK 3 T13: 0.0557 T23: 0.0192 REMARK 3 L TENSOR REMARK 3 L11: 3.4277 L22: 2.4010 REMARK 3 L33: 2.4917 L12: 2.6605 REMARK 3 L13: 1.7550 L23: -0.1307 REMARK 3 S TENSOR REMARK 3 S11: -0.0780 S12: 0.3430 S13: 0.2362 REMARK 3 S21: 0.0216 S22: 0.1987 S23: 0.3035 REMARK 3 S31: -0.2022 S32: 0.2962 S33: -0.1168 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 108:145) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1143 18.7726 10.4626 REMARK 3 T TENSOR REMARK 3 T11: 0.0285 T22: -0.0208 REMARK 3 T33: 0.0541 T12: 0.0415 REMARK 3 T13: 0.0754 T23: -0.0410 REMARK 3 L TENSOR REMARK 3 L11: 0.0376 L22: 0.0078 REMARK 3 L33: 0.0618 L12: 0.0264 REMARK 3 L13: -0.0131 L23: 0.0367 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: 0.0042 S13: 0.0262 REMARK 3 S21: 0.0133 S22: 0.0505 S23: -0.0320 REMARK 3 S31: 0.0175 S32: 0.0354 S33: -0.0194 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN B AND RESID 146:152) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8950 18.3099 29.2137 REMARK 3 T TENSOR REMARK 3 T11: 0.3346 T22: 0.2412 REMARK 3 T33: 0.1693 T12: 0.0443 REMARK 3 T13: 0.0497 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: -0.4115 L22: 0.3634 REMARK 3 L33: 1.5339 L12: 0.7473 REMARK 3 L13: 1.4792 L23: -0.9525 REMARK 3 S TENSOR REMARK 3 S11: -0.1076 S12: -0.0633 S13: -0.0103 REMARK 3 S21: 0.3207 S22: 0.1504 S23: 0.0467 REMARK 3 S31: 0.2404 S32: 0.4796 S33: -0.0444 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103353. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU R-AXIS IV REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26836 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.24500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE TRIHYDRATE, 0.1 M REMARK 280 TRIS HYDROCHLORIDE AND 15% (W/V) PEG 4000, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 21.19350 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 21.19350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 257 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 0 REMARK 465 MSE A 7 REMARK 465 PRO A 8 REMARK 465 PRO A 9 REMARK 465 GLY A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 GLN A 14 REMARK 465 GLU A 15 REMARK 465 GLY A 16 REMARK 465 GLU A 17 REMARK 465 PRO A 18 REMARK 465 PRO A 19 REMARK 465 THR A 20 REMARK 465 VAL A 21 REMARK 465 GLU A 22 REMARK 465 LEU A 152 REMARK 465 GLU A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 MSE B 0 REMARK 465 PRO B 6 REMARK 465 MSE B 7 REMARK 465 PRO B 8 REMARK 465 PRO B 9 REMARK 465 GLY B 10 REMARK 465 GLU B 11 REMARK 465 GLY B 12 REMARK 465 ALA B 13 REMARK 465 GLN B 14 REMARK 465 GLU B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 17 REMARK 465 PRO B 18 REMARK 465 PRO B 19 REMARK 465 THR B 20 REMARK 465 ASP B 150 REMARK 465 PRO B 151 REMARK 465 LEU B 152 REMARK 465 GLU B 153 REMARK 465 HIS B 154 REMARK 465 HIS B 155 REMARK 465 HIS B 156 REMARK 465 HIS B 157 REMARK 465 HIS B 158 REMARK 465 HIS B 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 GLN B 149 CD OE1 NE2 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 448 DISTANCE = 6.40 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 DBREF 6SA9 A 0 151 UNP P63128 POK9_HUMAN 282 433 DBREF 6SA9 B 0 151 UNP P63128 POK9_HUMAN 282 433 SEQADV 6SA9 MSE A 0 UNP P63128 PHE 282 CONFLICT SEQADV 6SA9 MSE A 32 UNP P63128 ILE 314 CONFLICT SEQADV 6SA9 LEU A 152 UNP P63128 EXPRESSION TAG SEQADV 6SA9 GLU A 153 UNP P63128 EXPRESSION TAG SEQADV 6SA9 HIS A 154 UNP P63128 EXPRESSION TAG SEQADV 6SA9 HIS A 155 UNP P63128 EXPRESSION TAG SEQADV 6SA9 HIS A 156 UNP P63128 EXPRESSION TAG SEQADV 6SA9 HIS A 157 UNP P63128 EXPRESSION TAG SEQADV 6SA9 HIS A 158 UNP P63128 EXPRESSION TAG SEQADV 6SA9 HIS A 159 UNP P63128 EXPRESSION TAG SEQADV 6SA9 MSE B 0 UNP P63128 PHE 282 CONFLICT SEQADV 6SA9 MSE B 32 UNP P63128 ILE 314 CONFLICT SEQADV 6SA9 LEU B 152 UNP P63128 EXPRESSION TAG SEQADV 6SA9 GLU B 153 UNP P63128 EXPRESSION TAG SEQADV 6SA9 HIS B 154 UNP P63128 EXPRESSION TAG SEQADV 6SA9 HIS B 155 UNP P63128 EXPRESSION TAG SEQADV 6SA9 HIS B 156 UNP P63128 EXPRESSION TAG SEQADV 6SA9 HIS B 157 UNP P63128 EXPRESSION TAG SEQADV 6SA9 HIS B 158 UNP P63128 EXPRESSION TAG SEQADV 6SA9 HIS B 159 UNP P63128 EXPRESSION TAG SEQRES 1 A 160 MSE PRO VAL THR LEU GLU PRO MSE PRO PRO GLY GLU GLY SEQRES 2 A 160 ALA GLN GLU GLY GLU PRO PRO THR VAL GLU ALA ARG TYR SEQRES 3 A 160 LYS SER PHE SER ILE LYS MSE LEU LYS ASP MSE LYS GLU SEQRES 4 A 160 GLY VAL LYS GLN TYR GLY PRO ASN SER PRO TYR MSE ARG SEQRES 5 A 160 THR LEU LEU ASP SER ILE ALA HIS GLY HIS ARG LEU ILE SEQRES 6 A 160 PRO TYR ASP TRP GLU ILE LEU ALA LYS SER SER LEU SER SEQRES 7 A 160 PRO SER GLN PHE LEU GLN PHE LYS THR TRP TRP ILE ASP SEQRES 8 A 160 GLY VAL GLN GLU GLN VAL ARG ARG ASN ARG ALA ALA ASN SEQRES 9 A 160 PRO PRO VAL ASN ILE ASP ALA ASP GLN LEU LEU GLY ILE SEQRES 10 A 160 GLY GLN ASN TRP SER THR ILE SER GLN GLN ALA LEU MSE SEQRES 11 A 160 GLN ASN GLU ALA ILE GLU GLN VAL ARG ALA ILE CYS LEU SEQRES 12 A 160 ARG ALA TRP GLU LYS ILE GLN ASP PRO LEU GLU HIS HIS SEQRES 13 A 160 HIS HIS HIS HIS SEQRES 1 B 160 MSE PRO VAL THR LEU GLU PRO MSE PRO PRO GLY GLU GLY SEQRES 2 B 160 ALA GLN GLU GLY GLU PRO PRO THR VAL GLU ALA ARG TYR SEQRES 3 B 160 LYS SER PHE SER ILE LYS MSE LEU LYS ASP MSE LYS GLU SEQRES 4 B 160 GLY VAL LYS GLN TYR GLY PRO ASN SER PRO TYR MSE ARG SEQRES 5 B 160 THR LEU LEU ASP SER ILE ALA HIS GLY HIS ARG LEU ILE SEQRES 6 B 160 PRO TYR ASP TRP GLU ILE LEU ALA LYS SER SER LEU SER SEQRES 7 B 160 PRO SER GLN PHE LEU GLN PHE LYS THR TRP TRP ILE ASP SEQRES 8 B 160 GLY VAL GLN GLU GLN VAL ARG ARG ASN ARG ALA ALA ASN SEQRES 9 B 160 PRO PRO VAL ASN ILE ASP ALA ASP GLN LEU LEU GLY ILE SEQRES 10 B 160 GLY GLN ASN TRP SER THR ILE SER GLN GLN ALA LEU MSE SEQRES 11 B 160 GLN ASN GLU ALA ILE GLU GLN VAL ARG ALA ILE CYS LEU SEQRES 12 B 160 ARG ALA TRP GLU LYS ILE GLN ASP PRO LEU GLU HIS HIS SEQRES 13 B 160 HIS HIS HIS HIS MODRES 6SA9 MSE A 36 MET MODIFIED RESIDUE MODRES 6SA9 MSE A 50 MET MODIFIED RESIDUE MODRES 6SA9 MSE A 129 MET MODIFIED RESIDUE MODRES 6SA9 MSE B 36 MET MODIFIED RESIDUE MODRES 6SA9 MSE B 50 MET MODIFIED RESIDUE MODRES 6SA9 MSE B 129 MET MODIFIED RESIDUE HET MSE A 32 8 HET MSE A 36 8 HET MSE A 50 13 HET MSE A 129 8 HET MSE B 32 8 HET MSE B 36 13 HET MSE B 50 13 HET MSE B 129 13 HET GOL A 201 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *310(H2 O) HELIX 1 AA1 SER A 29 GLY A 44 1 16 HELIX 2 AA2 SER A 47 HIS A 61 1 15 HELIX 3 AA3 ILE A 64 LEU A 76 1 13 HELIX 4 AA4 SER A 77 ALA A 102 1 26 HELIX 5 AA5 ASP A 109 GLY A 115 1 7 HELIX 6 AA6 ILE A 116 SER A 121 1 6 HELIX 7 AA7 THR A 122 ALA A 127 1 6 HELIX 8 AA8 GLN A 130 LYS A 147 1 18 HELIX 9 AA9 SER B 29 GLY B 44 1 16 HELIX 10 AB1 SER B 47 HIS B 61 1 15 HELIX 11 AB2 ILE B 64 LEU B 76 1 13 HELIX 12 AB3 SER B 77 ALA B 102 1 26 HELIX 13 AB4 ASP B 109 GLY B 115 1 7 HELIX 14 AB5 ILE B 116 SER B 121 1 6 HELIX 15 AB6 THR B 122 ALA B 127 1 6 HELIX 16 AB7 GLN B 130 LYS B 147 1 18 SHEET 1 AA1 2 VAL B 2 LEU B 4 0 SHEET 2 AA1 2 ALA B 23 TYR B 25 -1 O ARG B 24 N THR B 3 LINK C LYS A 31 N MSE A 32 1555 1555 1.33 LINK C MSE A 32 N LEU A 33 1555 1555 1.33 LINK C ASP A 35 N MSE A 36 1555 1555 1.33 LINK C MSE A 36 N LYS A 37 1555 1555 1.33 LINK C TYR A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N ARG A 51 1555 1555 1.33 LINK C LEU A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N GLN A 130 1555 1555 1.33 LINK C LYS B 31 N MSE B 32 1555 1555 1.33 LINK C MSE B 32 N LEU B 33 1555 1555 1.33 LINK C ASP B 35 N MSE B 36 1555 1555 1.32 LINK C MSE B 36 N LYS B 37 1555 1555 1.33 LINK C TYR B 49 N MSE B 50 1555 1555 1.33 LINK C MSE B 50 N ARG B 51 1555 1555 1.33 LINK C LEU B 128 N MSE B 129 1555 1555 1.33 LINK C MSE B 129 N GLN B 130 1555 1555 1.33 CISPEP 1 ASN A 103 PRO A 104 0 -3.96 CISPEP 2 ASN B 103 PRO B 104 0 0.43 SITE 1 AC1 9 GLU A 69 LEU A 114 GLY A 115 ILE A 116 SITE 2 AC1 9 GLN A 126 HOH A 316 HOH A 340 HOH A 347 SITE 3 AC1 9 ARG B 100 CRYST1 42.387 98.920 76.508 90.00 94.37 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023592 0.000000 0.001801 0.00000 SCALE2 0.000000 0.010109 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013109 0.00000