data_6SAG # _entry.id 6SAG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6SAG pdb_00006sag 10.2210/pdb6sag/pdb WWPDB D_1292103363 ? ? EMDB EMD-10130 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-09-18 2 'Structure model' 1 1 2019-10-02 3 'Structure model' 1 2 2019-11-13 4 'Structure model' 1 3 2024-10-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' 7 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 6 4 'Structure model' em_3d_fitting_list 7 4 'Structure model' em_admin 8 4 'Structure model' pdbx_entry_details 9 4 'Structure model' pdbx_initial_refinement_model 10 4 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 3 'Structure model' '_citation.journal_volume' 12 4 'Structure model' '_database_2.pdbx_DOI' 13 4 'Structure model' '_database_2.pdbx_database_accession' 14 4 'Structure model' '_em_3d_fitting_list.accession_code' 15 4 'Structure model' '_em_3d_fitting_list.initial_refinement_model_id' 16 4 'Structure model' '_em_3d_fitting_list.source_name' 17 4 'Structure model' '_em_3d_fitting_list.type' 18 4 'Structure model' '_em_admin.last_update' 19 4 'Structure model' '_pdbx_entry_details.has_protein_modification' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6SAG _pdbx_database_status.recvd_initial_deposition_date 2019-07-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of TMV with Ca2+ at low pH' _pdbx_database_related.db_id EMD-10130 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Weis, F.' 1 0000-0002-8137-3532 'Beckers, M.' 2 0000-0001-5988-1322 'Sachse, C.' 3 0000-0002-1168-5143 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Embo Rep.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1469-3178 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 20 _citation.language ? _citation.page_first e48451 _citation.page_last e48451 _citation.title 'Elucidation of the viral disassembly switch of tobacco mosaic virus.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.15252/embr.201948451 _citation.pdbx_database_id_PubMed 31535454 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Weis, F.' 1 0000-0002-8137-3532 primary 'Beckers, M.' 2 0000-0001-5988-1322 primary 'von der Hocht, I.' 3 0000-0001-9939-3497 primary 'Sachse, C.' 4 0000-0002-1168-5143 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Capsid protein' 17531.463 1 ? ? ? 'Residues 154-158 are flexible and were not modelled.' 2 polymer nat ;RNA (5'-R(P*GP*AP*A)-3') ; 958.660 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 5 water nat water 18.015 71 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Coat protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;(ACE)SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAV LDPLVTALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSG PAT ; ;XSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPL VTALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT ; A ? 2 polyribonucleotide no no GAA GAA R ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 SER n 1 3 TYR n 1 4 SER n 1 5 ILE n 1 6 THR n 1 7 THR n 1 8 PRO n 1 9 SER n 1 10 GLN n 1 11 PHE n 1 12 VAL n 1 13 PHE n 1 14 LEU n 1 15 SER n 1 16 SER n 1 17 ALA n 1 18 TRP n 1 19 ALA n 1 20 ASP n 1 21 PRO n 1 22 ILE n 1 23 GLU n 1 24 LEU n 1 25 ILE n 1 26 ASN n 1 27 LEU n 1 28 CYS n 1 29 THR n 1 30 ASN n 1 31 ALA n 1 32 LEU n 1 33 GLY n 1 34 ASN n 1 35 GLN n 1 36 PHE n 1 37 GLN n 1 38 THR n 1 39 GLN n 1 40 GLN n 1 41 ALA n 1 42 ARG n 1 43 THR n 1 44 VAL n 1 45 VAL n 1 46 GLN n 1 47 ARG n 1 48 GLN n 1 49 PHE n 1 50 SER n 1 51 GLU n 1 52 VAL n 1 53 TRP n 1 54 LYS n 1 55 PRO n 1 56 SER n 1 57 PRO n 1 58 GLN n 1 59 VAL n 1 60 THR n 1 61 VAL n 1 62 ARG n 1 63 PHE n 1 64 PRO n 1 65 ASP n 1 66 SER n 1 67 ASP n 1 68 PHE n 1 69 LYS n 1 70 VAL n 1 71 TYR n 1 72 ARG n 1 73 TYR n 1 74 ASN n 1 75 ALA n 1 76 VAL n 1 77 LEU n 1 78 ASP n 1 79 PRO n 1 80 LEU n 1 81 VAL n 1 82 THR n 1 83 ALA n 1 84 LEU n 1 85 LEU n 1 86 GLY n 1 87 ALA n 1 88 PHE n 1 89 ASP n 1 90 THR n 1 91 ARG n 1 92 ASN n 1 93 ARG n 1 94 ILE n 1 95 ILE n 1 96 GLU n 1 97 VAL n 1 98 GLU n 1 99 ASN n 1 100 GLN n 1 101 ALA n 1 102 ASN n 1 103 PRO n 1 104 THR n 1 105 THR n 1 106 ALA n 1 107 GLU n 1 108 THR n 1 109 LEU n 1 110 ASP n 1 111 ALA n 1 112 THR n 1 113 ARG n 1 114 ARG n 1 115 VAL n 1 116 ASP n 1 117 ASP n 1 118 ALA n 1 119 THR n 1 120 VAL n 1 121 ALA n 1 122 ILE n 1 123 ARG n 1 124 SER n 1 125 ALA n 1 126 ILE n 1 127 ASN n 1 128 ASN n 1 129 LEU n 1 130 ILE n 1 131 VAL n 1 132 GLU n 1 133 LEU n 1 134 ILE n 1 135 ARG n 1 136 GLY n 1 137 THR n 1 138 GLY n 1 139 SER n 1 140 TYR n 1 141 ASN n 1 142 ARG n 1 143 SER n 1 144 SER n 1 145 PHE n 1 146 GLU n 1 147 SER n 1 148 SER n 1 149 SER n 1 150 GLY n 1 151 LEU n 1 152 VAL n 1 153 TRP n 1 154 THR n 1 155 SER n 1 156 GLY n 1 157 PRO n 1 158 ALA n 1 159 THR n 2 1 G n 2 2 A n 2 3 A n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample 1 159 TMV 'Tobacco mosaic virus (strain vulgare)' 12243 ? ? vulgare ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 1 3 TMV 'Tobacco mosaic virus (vulgare)' 12243 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 SER 2 1 1 SER SER A . n A 1 3 TYR 3 2 2 TYR TYR A . n A 1 4 SER 4 3 3 SER SER A . n A 1 5 ILE 5 4 4 ILE ILE A . n A 1 6 THR 6 5 5 THR THR A . n A 1 7 THR 7 6 6 THR THR A . n A 1 8 PRO 8 7 7 PRO PRO A . n A 1 9 SER 9 8 8 SER SER A . n A 1 10 GLN 10 9 9 GLN GLN A . n A 1 11 PHE 11 10 10 PHE PHE A . n A 1 12 VAL 12 11 11 VAL VAL A . n A 1 13 PHE 13 12 12 PHE PHE A . n A 1 14 LEU 14 13 13 LEU LEU A . n A 1 15 SER 15 14 14 SER SER A . n A 1 16 SER 16 15 15 SER SER A . n A 1 17 ALA 17 16 16 ALA ALA A . n A 1 18 TRP 18 17 17 TRP TRP A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 ASP 20 19 19 ASP ASP A . n A 1 21 PRO 21 20 20 PRO PRO A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 GLU 23 22 22 GLU GLU A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 ASN 26 25 25 ASN ASN A . n A 1 27 LEU 27 26 26 LEU LEU A . n A 1 28 CYS 28 27 27 CYS CYS A . n A 1 29 THR 29 28 28 THR THR A . n A 1 30 ASN 30 29 29 ASN ASN A . n A 1 31 ALA 31 30 30 ALA ALA A . n A 1 32 LEU 32 31 31 LEU LEU A . n A 1 33 GLY 33 32 32 GLY GLY A . n A 1 34 ASN 34 33 33 ASN ASN A . n A 1 35 GLN 35 34 34 GLN GLN A . n A 1 36 PHE 36 35 35 PHE PHE A . n A 1 37 GLN 37 36 36 GLN GLN A . n A 1 38 THR 38 37 37 THR THR A . n A 1 39 GLN 39 38 38 GLN GLN A . n A 1 40 GLN 40 39 39 GLN GLN A . n A 1 41 ALA 41 40 40 ALA ALA A . n A 1 42 ARG 42 41 41 ARG ARG A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 VAL 44 43 43 VAL VAL A . n A 1 45 VAL 45 44 44 VAL VAL A . n A 1 46 GLN 46 45 45 GLN GLN A . n A 1 47 ARG 47 46 46 ARG ARG A . n A 1 48 GLN 48 47 47 GLN GLN A . n A 1 49 PHE 49 48 48 PHE PHE A . n A 1 50 SER 50 49 49 SER SER A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 VAL 52 51 51 VAL VAL A . n A 1 53 TRP 53 52 52 TRP TRP A . n A 1 54 LYS 54 53 53 LYS LYS A . n A 1 55 PRO 55 54 54 PRO PRO A . n A 1 56 SER 56 55 55 SER SER A . n A 1 57 PRO 57 56 56 PRO PRO A . n A 1 58 GLN 58 57 57 GLN GLN A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 THR 60 59 59 THR THR A . n A 1 61 VAL 61 60 60 VAL VAL A . n A 1 62 ARG 62 61 61 ARG ARG A . n A 1 63 PHE 63 62 62 PHE PHE A . n A 1 64 PRO 64 63 63 PRO PRO A . n A 1 65 ASP 65 64 64 ASP ASP A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 ASP 67 66 66 ASP ASP A . n A 1 68 PHE 68 67 67 PHE PHE A . n A 1 69 LYS 69 68 68 LYS LYS A . n A 1 70 VAL 70 69 69 VAL VAL A . n A 1 71 TYR 71 70 70 TYR TYR A . n A 1 72 ARG 72 71 71 ARG ARG A . n A 1 73 TYR 73 72 72 TYR TYR A . n A 1 74 ASN 74 73 73 ASN ASN A . n A 1 75 ALA 75 74 74 ALA ALA A . n A 1 76 VAL 76 75 75 VAL VAL A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 ASP 78 77 77 ASP ASP A . n A 1 79 PRO 79 78 78 PRO PRO A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 VAL 81 80 80 VAL VAL A . n A 1 82 THR 82 81 81 THR THR A . n A 1 83 ALA 83 82 82 ALA ALA A . n A 1 84 LEU 84 83 83 LEU LEU A . n A 1 85 LEU 85 84 84 LEU LEU A . n A 1 86 GLY 86 85 85 GLY GLY A . n A 1 87 ALA 87 86 86 ALA ALA A . n A 1 88 PHE 88 87 87 PHE PHE A . n A 1 89 ASP 89 88 88 ASP ASP A . n A 1 90 THR 90 89 89 THR THR A . n A 1 91 ARG 91 90 90 ARG ARG A . n A 1 92 ASN 92 91 91 ASN ASN A . n A 1 93 ARG 93 92 92 ARG ARG A . n A 1 94 ILE 94 93 93 ILE ILE A . n A 1 95 ILE 95 94 94 ILE ILE A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 VAL 97 96 96 VAL VAL A . n A 1 98 GLU 98 97 97 GLU GLU A . n A 1 99 ASN 99 98 98 ASN ASN A . n A 1 100 GLN 100 99 99 GLN GLN A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 ASN 102 101 101 ASN ASN A . n A 1 103 PRO 103 102 102 PRO PRO A . n A 1 104 THR 104 103 103 THR THR A . n A 1 105 THR 105 104 104 THR THR A . n A 1 106 ALA 106 105 105 ALA ALA A . n A 1 107 GLU 107 106 106 GLU GLU A . n A 1 108 THR 108 107 107 THR THR A . n A 1 109 LEU 109 108 108 LEU LEU A . n A 1 110 ASP 110 109 109 ASP ASP A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 THR 112 111 111 THR THR A . n A 1 113 ARG 113 112 112 ARG ARG A . n A 1 114 ARG 114 113 113 ARG ARG A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 ASP 116 115 115 ASP ASP A . n A 1 117 ASP 117 116 116 ASP ASP A . n A 1 118 ALA 118 117 117 ALA ALA A . n A 1 119 THR 119 118 118 THR THR A . n A 1 120 VAL 120 119 119 VAL VAL A . n A 1 121 ALA 121 120 120 ALA ALA A . n A 1 122 ILE 122 121 121 ILE ILE A . n A 1 123 ARG 123 122 122 ARG ARG A . n A 1 124 SER 124 123 123 SER SER A . n A 1 125 ALA 125 124 124 ALA ALA A . n A 1 126 ILE 126 125 125 ILE ILE A . n A 1 127 ASN 127 126 126 ASN ASN A . n A 1 128 ASN 128 127 127 ASN ASN A . n A 1 129 LEU 129 128 128 LEU LEU A . n A 1 130 ILE 130 129 129 ILE ILE A . n A 1 131 VAL 131 130 130 VAL VAL A . n A 1 132 GLU 132 131 131 GLU GLU A . n A 1 133 LEU 133 132 132 LEU LEU A . n A 1 134 ILE 134 133 133 ILE ILE A . n A 1 135 ARG 135 134 134 ARG ARG A . n A 1 136 GLY 136 135 135 GLY GLY A . n A 1 137 THR 137 136 136 THR THR A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 SER 139 138 138 SER SER A . n A 1 140 TYR 140 139 139 TYR TYR A . n A 1 141 ASN 141 140 140 ASN ASN A . n A 1 142 ARG 142 141 141 ARG ARG A . n A 1 143 SER 143 142 142 SER SER A . n A 1 144 SER 144 143 143 SER SER A . n A 1 145 PHE 145 144 144 PHE PHE A . n A 1 146 GLU 146 145 145 GLU GLU A . n A 1 147 SER 147 146 146 SER SER A . n A 1 148 SER 148 147 147 SER SER A . n A 1 149 SER 149 148 148 SER SER A . n A 1 150 GLY 150 149 149 GLY GLY A . n A 1 151 LEU 151 150 150 LEU LEU A . n A 1 152 VAL 152 151 151 VAL VAL A . n A 1 153 TRP 153 152 152 TRP TRP A . n A 1 154 THR 154 153 153 THR THR A . n A 1 155 SER 155 154 ? ? ? A . n A 1 156 GLY 156 155 ? ? ? A . n A 1 157 PRO 157 156 ? ? ? A . n A 1 158 ALA 158 157 ? ? ? A . n A 1 159 THR 159 158 ? ? ? A . n B 2 1 G 1 4 4 G G R . n B 2 2 A 2 5 5 A A R . n B 2 3 A 3 6 6 A A R . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 201 1 CA CA A . D 4 MG 1 101 1 MG MG R . E 4 MG 1 102 2 MG MG R . F 4 MG 1 103 3 MG MG R . G 4 MG 1 104 4 MG MG R . H 5 HOH 1 301 214 HOH HOH A . H 5 HOH 2 302 36 HOH HOH A . H 5 HOH 3 303 196 HOH HOH A . H 5 HOH 4 304 22 HOH HOH A . H 5 HOH 5 305 201 HOH HOH A . H 5 HOH 6 306 180 HOH HOH A . H 5 HOH 7 307 121 HOH HOH A . H 5 HOH 8 308 5 HOH HOH A . H 5 HOH 9 309 137 HOH HOH A . H 5 HOH 10 310 210 HOH HOH A . H 5 HOH 11 311 211 HOH HOH A . H 5 HOH 12 312 96 HOH HOH A . H 5 HOH 13 313 92 HOH HOH A . H 5 HOH 14 314 35 HOH HOH A . H 5 HOH 15 315 2 HOH HOH A . H 5 HOH 16 316 171 HOH HOH A . H 5 HOH 17 317 224 HOH HOH A . H 5 HOH 18 318 68 HOH HOH A . H 5 HOH 19 319 141 HOH HOH A . H 5 HOH 20 320 72 HOH HOH A . H 5 HOH 21 321 150 HOH HOH A . H 5 HOH 22 322 161 HOH HOH A . H 5 HOH 23 323 163 HOH HOH A . H 5 HOH 24 324 80 HOH HOH A . H 5 HOH 25 325 14 HOH HOH A . H 5 HOH 26 326 140 HOH HOH A . H 5 HOH 27 327 6 HOH HOH A . H 5 HOH 28 328 28 HOH HOH A . H 5 HOH 29 329 175 HOH HOH A . H 5 HOH 30 330 105 HOH HOH A . H 5 HOH 31 331 3 HOH HOH A . H 5 HOH 32 332 94 HOH HOH A . H 5 HOH 33 333 147 HOH HOH A . H 5 HOH 34 334 29 HOH HOH A . H 5 HOH 35 335 170 HOH HOH A . H 5 HOH 36 336 26 HOH HOH A . H 5 HOH 37 337 42 HOH HOH A . H 5 HOH 38 338 4 HOH HOH A . H 5 HOH 39 339 205 HOH HOH A . H 5 HOH 40 340 202 HOH HOH A . H 5 HOH 41 341 142 HOH HOH A . H 5 HOH 42 342 37 HOH HOH A . H 5 HOH 43 343 181 HOH HOH A . H 5 HOH 44 344 32 HOH HOH A . H 5 HOH 45 345 33 HOH HOH A . H 5 HOH 46 346 1 HOH HOH A . H 5 HOH 47 347 157 HOH HOH A . H 5 HOH 48 348 215 HOH HOH A . H 5 HOH 49 349 206 HOH HOH A . H 5 HOH 50 350 102 HOH HOH A . H 5 HOH 51 351 204 HOH HOH A . H 5 HOH 52 352 185 HOH HOH A . H 5 HOH 53 353 73 HOH HOH A . H 5 HOH 54 354 117 HOH HOH A . H 5 HOH 55 355 71 HOH HOH A . H 5 HOH 56 356 74 HOH HOH A . H 5 HOH 57 357 191 HOH HOH A . H 5 HOH 58 358 225 HOH HOH A . H 5 HOH 59 359 220 HOH HOH A . H 5 HOH 60 360 203 HOH HOH A . H 5 HOH 61 361 208 HOH HOH A . H 5 HOH 62 362 87 HOH HOH A . H 5 HOH 63 363 209 HOH HOH A . H 5 HOH 64 364 183 HOH HOH A . H 5 HOH 65 365 173 HOH HOH A . H 5 HOH 66 366 153 HOH HOH A . H 5 HOH 67 367 186 HOH HOH A . H 5 HOH 68 368 187 HOH HOH A . I 5 HOH 1 201 52 HOH HOH R . I 5 HOH 2 202 56 HOH HOH R . I 5 HOH 3 203 176 HOH HOH R . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6SAG _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6SAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6SAG _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 6SAG _struct.title 'Cryo-EM structure of TMV with Ca2+ at low pH' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6SAG _struct_keywords.text 'TMV, virus assembly/disassembly, Ca2+ switch, Caspar carboxylates, VIRUS' _struct_keywords.pdbx_keywords VIRUS # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? I N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP CAPSD_TMV P69687 ? 1 ;SYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVVQRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLV TALLGAFDTRNRIIEVENQANPTTAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT ; 2 2 PDB 6SAG 6SAG ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6SAG A 2 ? 159 ? P69687 2 ? 159 ? 1 158 2 2 6SAG R 1 ? 3 ? 6SAG 4 ? 6 ? 4 6 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 6SAG _struct_ref_seq_dif.mon_id ACE _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P69687 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details acetylation _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details 'UCSF CHIMERA 1.11.2_b41376.' _pdbx_struct_assembly.oligomeric_details 160-meric _pdbx_struct_assembly.oligomeric_count 160 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'point symmetry operation' ? ? 0.926988 -0.375092 -0.000000 69.46963 0.375092 0.926988 0.000000 -46.83140 -0.000000 0.000000 1.000000 1.40800 3 'point symmetry operation' ? ? 0.718612 -0.695411 -0.000000 151.43320 0.695411 0.718612 -0.000000 -64.18602 -0.000000 0.000000 1.000000 2.81600 4 'point symmetry operation' ? ? 0.405301 -0.914183 -0.000000 233.92199 0.914183 0.405301 -0.000000 -49.52966 -0.000000 0.000000 1.000000 4.22400 5 'point symmetry operation' ? ? 0.032806 -0.999462 -0.000000 304.89059 0.999462 0.032806 -0.000000 -5.00251 -0.000000 0.000000 1.000000 5.63200 6 'point symmetry operation' ? ? -0.344479 -0.938794 -0.000000 353.97582 0.938794 -0.344479 -0.000000 62.89336 -0.000000 0.000000 1.000000 7.04000 7 'point symmetry operation' ? ? -0.671462 -0.741039 -0.000000 374.01003 0.741039 -0.671462 -0.000000 144.24347 -0.000000 0.000000 1.000000 8.44800 8 'point symmetry operation' ? ? -0.900395 -0.435074 -0.000000 362.06771 0.435074 -0.900395 -0.000000 227.16868 0.000000 0.000000 1.000000 9.85600 9 'point symmetry operation' ? ? -0.997847 -0.065577 -0.000000 319.89274 0.065577 -0.997847 -0.000000 299.55985 0.000000 0.000000 1.000000 11.26400 10 'point symmetry operation' ? ? -0.949590 0.313495 0.000000 253.64372 -0.313495 -0.949590 0.000000 350.84608 -0.000000 -0.000000 1.000000 12.67200 11 'point symmetry operation' ? ? -0.762668 0.646790 0.000000 172.99465 -0.646790 -0.762668 0.000000 373.53829 -0.000000 -0.000000 1.000000 14.08000 12 'point symmetry operation' ? ? -0.464378 0.885637 -0.000000 89.72229 -0.885637 -0.464378 0.000000 364.32287 -0.000000 -0.000000 1.000000 15.48800 13 'point symmetry operation' ? ? -0.098278 0.995159 -0.000000 15.98648 -0.995159 -0.098278 0.000000 324.54549 -0.000000 -0.000000 1.000000 16.89600 14 'point symmetry operation' ? ? 0.282174 0.959363 -0.000000 -37.44552 -0.959363 0.282174 0.000000 260.01464 -0.000000 -0.000000 1.000000 18.30400 15 'point symmetry operation' ? ? 0.621421 0.783477 -0.000000 -62.77132 -0.783477 0.621421 0.000000 180.15343 -0.000000 -0.000000 1.000000 19.71200 16 'point symmetry operation' ? ? 0.869926 0.493183 -0.000000 -56.29272 -0.493183 0.869926 0.000000 96.62357 -0.000000 0.000000 1.000000 21.12000 17 'point symmetry operation' ? ? 0.991399 0.130872 -0.000000 -18.95575 -0.130872 0.991399 0.000000 21.62250 -0.000000 0.000000 1.000000 22.52800 18 'point symmetry operation' ? ? 0.968104 -0.250549 -0.000000 43.78746 0.250549 0.968104 0.000000 -33.89776 -0.000000 0.000000 1.000000 23.93600 19 'point symmetry operation' ? ? 0.803441 -0.595384 -0.000000 122.77484 0.595384 0.803441 0.000000 -61.82988 -0.000000 0.000000 1.000000 25.34400 20 'point symmetry operation' ? ? 0.521456 -0.853278 -0.000000 206.47227 0.853278 0.521456 -0.000000 -58.09507 -0.000000 0.000000 1.000000 26.75200 21 'point symmetry operation' ? ? 0.163326 -0.986572 -0.000000 282.65786 0.986572 0.163326 -0.000000 -23.23871 -0.000000 0.000000 1.000000 28.16000 22 'point symmetry operation' ? ? -0.218654 -0.975802 -0.000000 340.20661 0.975802 -0.218654 -0.000000 37.64931 -0.000000 0.000000 1.000000 29.56800 23 'point symmetry operation' ? ? -0.568705 -0.822541 -0.000000 370.71497 0.822541 -0.568705 -0.000000 115.67783 -0.000000 0.000000 1.000000 30.97600 24 'point symmetry operation' ? ? -0.835712 -0.549169 -0.000000 369.72798 0.549169 -0.835712 -0.000000 199.45274 0.000000 0.000000 1.000000 32.38400 25 'point symmetry operation' ? ? -0.980683 -0.195604 -0.000000 337.38975 0.195604 -0.980683 -0.000000 276.74082 0.000000 0.000000 1.000000 33.79200 26 'point symmetry operation' ? ? -0.982450 0.186524 0.000000 278.42246 -0.186524 -0.982450 0.000000 336.25611 -0.000000 -0.000000 1.000000 35.20000 27 'point symmetry operation' ? ? -0.840756 0.541415 0.000000 201.43682 -0.541415 -0.840756 0.000000 369.30788 -0.000000 -0.000000 1.000000 36.60800 28 'point symmetry operation' ? ? -0.576290 0.817245 -0.000000 117.67462 -0.817245 -0.576290 0.000000 371.06976 -0.000000 -0.000000 1.000000 38.01600 29 'point symmetry operation' ? ? -0.227671 0.973738 -0.000000 39.36724 -0.973738 -0.227671 0.000000 341.28447 -0.000000 -0.000000 1.000000 39.42400 30 'point symmetry operation' ? ? 0.154193 0.988041 -0.000000 -22.05051 -0.988041 0.154193 0.000000 284.30140 -0.000000 -0.000000 1.000000 40.83200 31 'point symmetry operation' ? ? 0.513541 0.858065 -0.000000 -57.61010 -0.858065 0.513541 0.000000 208.44150 -0.000000 -0.000000 1.000000 42.24000 32 'point symmetry operation' ? ? 0.797900 0.602790 -0.000000 -62.11896 -0.602790 0.797900 0.000000 124.78219 -0.000000 0.000000 1.000000 43.64800 33 'point symmetry operation' ? ? 0.965745 0.259493 -0.000000 -34.91868 -0.259493 0.965745 0.000000 45.53982 -0.000000 0.000000 1.000000 45.05600 34 'point symmetry operation' ? ? 0.992567 -0.121696 -0.000000 20.01882 0.121696 0.992567 0.000000 -17.71427 -0.000000 0.000000 1.000000 46.46400 35 'point symmetry operation' ? ? 0.874450 -0.485115 -0.000000 94.67131 0.485115 0.874450 0.000000 -55.74341 -0.000000 0.000000 1.000000 47.87200 36 'point symmetry operation' ? ? 0.628642 -0.777695 -0.000000 178.13767 0.777695 0.628642 -0.000000 -62.99440 -0.000000 0.000000 1.000000 49.28000 37 'point symmetry operation' ? ? 0.291036 -0.956712 -0.000000 258.22973 0.956712 0.291036 -0.000000 -38.40841 -0.000000 0.000000 1.000000 50.68800 38 'point symmetry operation' ? ? -0.089068 -0.996026 -0.000000 323.25207 0.996026 -0.089068 -0.000000 14.42439 -0.000000 0.000000 1.000000 52.09600 39 'point symmetry operation' ? ? -0.456166 -0.889895 -0.000000 363.70981 0.889895 -0.456166 -0.000000 87.78911 -0.000000 0.000000 1.000000 53.50400 40 'point symmetry operation' ? ? -0.756653 -0.653817 -0.000000 373.69512 0.653817 -0.756653 -0.000000 170.97266 0.000000 0.000000 1.000000 54.91200 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 7 ? SER A 15 ? THR A 6 SER A 14 5 ? 9 HELX_P HELX_P2 AA2 ASP A 20 ? LEU A 32 ? ASP A 19 LEU A 31 1 ? 13 HELX_P HELX_P3 AA3 THR A 38 ? VAL A 52 ? THR A 37 VAL A 51 1 ? 15 HELX_P HELX_P4 AA4 VAL A 76 ? PHE A 88 ? VAL A 75 PHE A 87 1 ? 13 HELX_P HELX_P5 AA5 ASN A 92 ? GLU A 98 ? ASN A 91 GLU A 97 1 ? 7 HELX_P HELX_P6 AA6 THR A 104 ? ARG A 135 ? THR A 103 ARG A 134 1 ? 32 HELX_P HELX_P7 AA7 ASN A 141 ? GLY A 150 ? ASN A 140 GLY A 149 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A SER 2 N ? ? A ACE 0 A SER 1 1_555 ? ? ? ? ? ? ? 1.326 ? ? metalc1 metalc ? ? A ASN 102 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 101 A CA 201 1_555 ? ? ? ? ? ? ? 2.545 ? ? metalc2 metalc ? ? A PRO 103 O ? ? ? 1_555 C CA . CA ? ? A PRO 102 A CA 201 1_555 ? ? ? ? ? ? ? 2.463 ? ? metalc3 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 201 A HOH 347 1_555 ? ? ? ? ? ? ? 2.775 ? ? metalc4 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 201 A HOH 360 1_555 ? ? ? ? ? ? ? 2.733 ? ? metalc5 metalc ? ? B G 1 OP2 ? ? ? 1_555 G MG . MG ? ? R G 4 R MG 104 1_555 ? ? ? ? ? ? ? 2.525 ? ? metalc6 metalc ? ? B A 2 OP2 ? ? ? 1_555 D MG . MG ? ? R A 5 R MG 101 1_555 ? ? ? ? ? ? ? 2.610 ? ? metalc7 metalc ? ? B A 2 OP1 ? ? ? 1_555 F MG . MG ? ? R A 5 R MG 103 1_555 ? ? ? ? ? ? ? 2.615 ? ? metalc8 metalc ? ? B A 3 OP1 ? ? ? 1_555 F MG . MG ? ? R A 6 R MG 103 1_555 ? ? ? ? ? ? ? 2.624 ? ? metalc9 metalc ? ? G MG . MG ? ? ? 1_555 I HOH . O ? ? R MG 104 R HOH 203 1_555 ? ? ? ? ? ? ? 2.637 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASN 102 ? A ASN 101 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? A PRO 103 ? A PRO 102 ? 1_555 78.6 ? 2 OD1 ? A ASN 102 ? A ASN 101 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 347 ? 1_555 70.9 ? 3 O ? A PRO 103 ? A PRO 102 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 347 ? 1_555 146.1 ? 4 OD1 ? A ASN 102 ? A ASN 101 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 360 ? 1_555 87.0 ? 5 O ? A PRO 103 ? A PRO 102 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 360 ? 1_555 85.8 ? 6 O ? H HOH . ? A HOH 347 ? 1_555 CA ? C CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 360 ? 1_555 78.2 ? 7 OP2 ? B G 1 ? R G 4 ? 1_555 MG ? G MG . ? R MG 104 ? 1_555 O ? I HOH . ? R HOH 203 ? 1_555 120.0 ? 8 OP1 ? B A 2 ? R A 5 ? 1_555 MG ? F MG . ? R MG 103 ? 1_555 OP1 ? B A 3 ? R A 6 ? 1_555 107.6 ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id ACE _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 1 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id SER _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 2 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id ACE _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 0 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id SER _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 1 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id SER _pdbx_modification_feature.ref_pcm_id 6 _pdbx_modification_feature.ref_comp_id ACE _pdbx_modification_feature.type None _pdbx_modification_feature.category 'Terminal acetylation' # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 18 ? ALA A 19 ? TRP A 17 ALA A 18 AA1 2 LYS A 69 ? TYR A 71 ? LYS A 68 TYR A 70 AA1 3 SER A 139 ? TYR A 140 ? SER A 138 TYR A 139 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 19 ? N ALA A 18 O VAL A 70 ? O VAL A 69 AA1 2 3 N LYS A 69 ? N LYS A 68 O TYR A 140 ? O TYR A 139 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 201 ? 4 'binding site for residue CA A 201' AC2 Software R MG 101 ? 2 'binding site for residue MG R 101' AC3 Software R MG 102 ? 1 'binding site for residue MG R 102' AC4 Software R MG 103 ? 3 'binding site for residue MG R 103' AC5 Software R MG 104 ? 2 'binding site for residue MG R 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ASN A 102 ? ASN A 101 . ? 1_555 ? 2 AC1 4 PRO A 103 ? PRO A 102 . ? 1_555 ? 3 AC1 4 HOH H . ? HOH A 347 . ? 1_555 ? 4 AC1 4 HOH H . ? HOH A 360 . ? 1_555 ? 5 AC2 2 A B 2 ? A R 5 . ? 1_555 ? 6 AC2 2 MG F . ? MG R 103 . ? 1_555 ? 7 AC3 1 G B 1 ? G R 4 . ? 1_555 ? 8 AC4 3 A B 2 ? A R 5 . ? 1_555 ? 9 AC4 3 A B 3 ? A R 6 . ? 1_555 ? 10 AC4 3 MG D . ? MG R 101 . ? 1_555 ? 11 AC5 2 G B 1 ? G R 4 . ? 1_555 ? 12 AC5 2 HOH I . ? HOH R 203 . ? 1_555 ? # _pdbx_entry_details.entry_id 6SAG _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 91 ? ? -119.33 78.39 2 1 VAL A 96 ? ? -106.93 -60.95 3 1 ASN A 98 ? ? -99.46 31.30 # _em_3d_fitting.entry_id 6SAG _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id ? _em_3d_fitting_list.pdb_chain_residue_range ? _em_3d_fitting_list.pdb_entry_id 4UDV _em_3d_fitting_list.initial_refinement_model_id 1 _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name PDB _em_3d_fitting_list.type 'experimental model' _em_3d_fitting_list.accession_code 4UDV # _em_3d_reconstruction.entry_id 6SAG _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 15216 _em_3d_reconstruction.resolution 2.0 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 5.2 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Tobacco mosaic virus (strain vulgare)' _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list 1,2 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6SAG _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 40 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image 1-40 _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6SAG _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 350 _em_imaging.nominal_defocus_min 150 _em_imaging.nominal_magnification 215000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.details ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate STRAIN _em_virus_entity.virus_type VIRION _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 283.15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 6SAG _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6SAG _em_experiment.id 1 _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.reconstruction_method HELICAL _em_experiment.entity_assembly_id 1 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id A _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 368 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.63 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 154 ? A SER 155 2 1 Y 1 A GLY 155 ? A GLY 156 3 1 Y 1 A PRO 156 ? A PRO 157 4 1 Y 1 A ALA 157 ? A ALA 158 5 1 Y 1 A THR 158 ? A THR 159 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ACE C C N N 38 ACE O O N N 39 ACE CH3 C N N 40 ACE H H N N 41 ACE H1 H N N 42 ACE H2 H N N 43 ACE H3 H N N 44 ALA N N N N 45 ALA CA C N S 46 ALA C C N N 47 ALA O O N N 48 ALA CB C N N 49 ALA OXT O N N 50 ALA H H N N 51 ALA H2 H N N 52 ALA HA H N N 53 ALA HB1 H N N 54 ALA HB2 H N N 55 ALA HB3 H N N 56 ALA HXT H N N 57 ARG N N N N 58 ARG CA C N S 59 ARG C C N N 60 ARG O O N N 61 ARG CB C N N 62 ARG CG C N N 63 ARG CD C N N 64 ARG NE N N N 65 ARG CZ C N N 66 ARG NH1 N N N 67 ARG NH2 N N N 68 ARG OXT O N N 69 ARG H H N N 70 ARG H2 H N N 71 ARG HA H N N 72 ARG HB2 H N N 73 ARG HB3 H N N 74 ARG HG2 H N N 75 ARG HG3 H N N 76 ARG HD2 H N N 77 ARG HD3 H N N 78 ARG HE H N N 79 ARG HH11 H N N 80 ARG HH12 H N N 81 ARG HH21 H N N 82 ARG HH22 H N N 83 ARG HXT H N N 84 ASN N N N N 85 ASN CA C N S 86 ASN C C N N 87 ASN O O N N 88 ASN CB C N N 89 ASN CG C N N 90 ASN OD1 O N N 91 ASN ND2 N N N 92 ASN OXT O N N 93 ASN H H N N 94 ASN H2 H N N 95 ASN HA H N N 96 ASN HB2 H N N 97 ASN HB3 H N N 98 ASN HD21 H N N 99 ASN HD22 H N N 100 ASN HXT H N N 101 ASP N N N N 102 ASP CA C N S 103 ASP C C N N 104 ASP O O N N 105 ASP CB C N N 106 ASP CG C N N 107 ASP OD1 O N N 108 ASP OD2 O N N 109 ASP OXT O N N 110 ASP H H N N 111 ASP H2 H N N 112 ASP HA H N N 113 ASP HB2 H N N 114 ASP HB3 H N N 115 ASP HD2 H N N 116 ASP HXT H N N 117 CA CA CA N N 118 CYS N N N N 119 CYS CA C N R 120 CYS C C N N 121 CYS O O N N 122 CYS CB C N N 123 CYS SG S N N 124 CYS OXT O N N 125 CYS H H N N 126 CYS H2 H N N 127 CYS HA H N N 128 CYS HB2 H N N 129 CYS HB3 H N N 130 CYS HG H N N 131 CYS HXT H N N 132 G OP3 O N N 133 G P P N N 134 G OP1 O N N 135 G OP2 O N N 136 G "O5'" O N N 137 G "C5'" C N N 138 G "C4'" C N R 139 G "O4'" O N N 140 G "C3'" C N S 141 G "O3'" O N N 142 G "C2'" C N R 143 G "O2'" O N N 144 G "C1'" C N R 145 G N9 N Y N 146 G C8 C Y N 147 G N7 N Y N 148 G C5 C Y N 149 G C6 C N N 150 G O6 O N N 151 G N1 N N N 152 G C2 C N N 153 G N2 N N N 154 G N3 N N N 155 G C4 C Y N 156 G HOP3 H N N 157 G HOP2 H N N 158 G "H5'" H N N 159 G "H5''" H N N 160 G "H4'" H N N 161 G "H3'" H N N 162 G "HO3'" H N N 163 G "H2'" H N N 164 G "HO2'" H N N 165 G "H1'" H N N 166 G H8 H N N 167 G H1 H N N 168 G H21 H N N 169 G H22 H N N 170 GLN N N N N 171 GLN CA C N S 172 GLN C C N N 173 GLN O O N N 174 GLN CB C N N 175 GLN CG C N N 176 GLN CD C N N 177 GLN OE1 O N N 178 GLN NE2 N N N 179 GLN OXT O N N 180 GLN H H N N 181 GLN H2 H N N 182 GLN HA H N N 183 GLN HB2 H N N 184 GLN HB3 H N N 185 GLN HG2 H N N 186 GLN HG3 H N N 187 GLN HE21 H N N 188 GLN HE22 H N N 189 GLN HXT H N N 190 GLU N N N N 191 GLU CA C N S 192 GLU C C N N 193 GLU O O N N 194 GLU CB C N N 195 GLU CG C N N 196 GLU CD C N N 197 GLU OE1 O N N 198 GLU OE2 O N N 199 GLU OXT O N N 200 GLU H H N N 201 GLU H2 H N N 202 GLU HA H N N 203 GLU HB2 H N N 204 GLU HB3 H N N 205 GLU HG2 H N N 206 GLU HG3 H N N 207 GLU HE2 H N N 208 GLU HXT H N N 209 GLY N N N N 210 GLY CA C N N 211 GLY C C N N 212 GLY O O N N 213 GLY OXT O N N 214 GLY H H N N 215 GLY H2 H N N 216 GLY HA2 H N N 217 GLY HA3 H N N 218 GLY HXT H N N 219 HOH O O N N 220 HOH H1 H N N 221 HOH H2 H N N 222 ILE N N N N 223 ILE CA C N S 224 ILE C C N N 225 ILE O O N N 226 ILE CB C N S 227 ILE CG1 C N N 228 ILE CG2 C N N 229 ILE CD1 C N N 230 ILE OXT O N N 231 ILE H H N N 232 ILE H2 H N N 233 ILE HA H N N 234 ILE HB H N N 235 ILE HG12 H N N 236 ILE HG13 H N N 237 ILE HG21 H N N 238 ILE HG22 H N N 239 ILE HG23 H N N 240 ILE HD11 H N N 241 ILE HD12 H N N 242 ILE HD13 H N N 243 ILE HXT H N N 244 LEU N N N N 245 LEU CA C N S 246 LEU C C N N 247 LEU O O N N 248 LEU CB C N N 249 LEU CG C N N 250 LEU CD1 C N N 251 LEU CD2 C N N 252 LEU OXT O N N 253 LEU H H N N 254 LEU H2 H N N 255 LEU HA H N N 256 LEU HB2 H N N 257 LEU HB3 H N N 258 LEU HG H N N 259 LEU HD11 H N N 260 LEU HD12 H N N 261 LEU HD13 H N N 262 LEU HD21 H N N 263 LEU HD22 H N N 264 LEU HD23 H N N 265 LEU HXT H N N 266 LYS N N N N 267 LYS CA C N S 268 LYS C C N N 269 LYS O O N N 270 LYS CB C N N 271 LYS CG C N N 272 LYS CD C N N 273 LYS CE C N N 274 LYS NZ N N N 275 LYS OXT O N N 276 LYS H H N N 277 LYS H2 H N N 278 LYS HA H N N 279 LYS HB2 H N N 280 LYS HB3 H N N 281 LYS HG2 H N N 282 LYS HG3 H N N 283 LYS HD2 H N N 284 LYS HD3 H N N 285 LYS HE2 H N N 286 LYS HE3 H N N 287 LYS HZ1 H N N 288 LYS HZ2 H N N 289 LYS HZ3 H N N 290 LYS HXT H N N 291 MG MG MG N N 292 PHE N N N N 293 PHE CA C N S 294 PHE C C N N 295 PHE O O N N 296 PHE CB C N N 297 PHE CG C Y N 298 PHE CD1 C Y N 299 PHE CD2 C Y N 300 PHE CE1 C Y N 301 PHE CE2 C Y N 302 PHE CZ C Y N 303 PHE OXT O N N 304 PHE H H N N 305 PHE H2 H N N 306 PHE HA H N N 307 PHE HB2 H N N 308 PHE HB3 H N N 309 PHE HD1 H N N 310 PHE HD2 H N N 311 PHE HE1 H N N 312 PHE HE2 H N N 313 PHE HZ H N N 314 PHE HXT H N N 315 PRO N N N N 316 PRO CA C N S 317 PRO C C N N 318 PRO O O N N 319 PRO CB C N N 320 PRO CG C N N 321 PRO CD C N N 322 PRO OXT O N N 323 PRO H H N N 324 PRO HA H N N 325 PRO HB2 H N N 326 PRO HB3 H N N 327 PRO HG2 H N N 328 PRO HG3 H N N 329 PRO HD2 H N N 330 PRO HD3 H N N 331 PRO HXT H N N 332 SER N N N N 333 SER CA C N S 334 SER C C N N 335 SER O O N N 336 SER CB C N N 337 SER OG O N N 338 SER OXT O N N 339 SER H H N N 340 SER H2 H N N 341 SER HA H N N 342 SER HB2 H N N 343 SER HB3 H N N 344 SER HG H N N 345 SER HXT H N N 346 THR N N N N 347 THR CA C N S 348 THR C C N N 349 THR O O N N 350 THR CB C N R 351 THR OG1 O N N 352 THR CG2 C N N 353 THR OXT O N N 354 THR H H N N 355 THR H2 H N N 356 THR HA H N N 357 THR HB H N N 358 THR HG1 H N N 359 THR HG21 H N N 360 THR HG22 H N N 361 THR HG23 H N N 362 THR HXT H N N 363 TRP N N N N 364 TRP CA C N S 365 TRP C C N N 366 TRP O O N N 367 TRP CB C N N 368 TRP CG C Y N 369 TRP CD1 C Y N 370 TRP CD2 C Y N 371 TRP NE1 N Y N 372 TRP CE2 C Y N 373 TRP CE3 C Y N 374 TRP CZ2 C Y N 375 TRP CZ3 C Y N 376 TRP CH2 C Y N 377 TRP OXT O N N 378 TRP H H N N 379 TRP H2 H N N 380 TRP HA H N N 381 TRP HB2 H N N 382 TRP HB3 H N N 383 TRP HD1 H N N 384 TRP HE1 H N N 385 TRP HE3 H N N 386 TRP HZ2 H N N 387 TRP HZ3 H N N 388 TRP HH2 H N N 389 TRP HXT H N N 390 TYR N N N N 391 TYR CA C N S 392 TYR C C N N 393 TYR O O N N 394 TYR CB C N N 395 TYR CG C Y N 396 TYR CD1 C Y N 397 TYR CD2 C Y N 398 TYR CE1 C Y N 399 TYR CE2 C Y N 400 TYR CZ C Y N 401 TYR OH O N N 402 TYR OXT O N N 403 TYR H H N N 404 TYR H2 H N N 405 TYR HA H N N 406 TYR HB2 H N N 407 TYR HB3 H N N 408 TYR HD1 H N N 409 TYR HD2 H N N 410 TYR HE1 H N N 411 TYR HE2 H N N 412 TYR HH H N N 413 TYR HXT H N N 414 VAL N N N N 415 VAL CA C N S 416 VAL C C N N 417 VAL O O N N 418 VAL CB C N N 419 VAL CG1 C N N 420 VAL CG2 C N N 421 VAL OXT O N N 422 VAL H H N N 423 VAL H2 H N N 424 VAL HA H N N 425 VAL HB H N N 426 VAL HG11 H N N 427 VAL HG12 H N N 428 VAL HG13 H N N 429 VAL HG21 H N N 430 VAL HG22 H N N 431 VAL HG23 H N N 432 VAL HXT H N N 433 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ACE C O doub N N 40 ACE C CH3 sing N N 41 ACE C H sing N N 42 ACE CH3 H1 sing N N 43 ACE CH3 H2 sing N N 44 ACE CH3 H3 sing N N 45 ALA N CA sing N N 46 ALA N H sing N N 47 ALA N H2 sing N N 48 ALA CA C sing N N 49 ALA CA CB sing N N 50 ALA CA HA sing N N 51 ALA C O doub N N 52 ALA C OXT sing N N 53 ALA CB HB1 sing N N 54 ALA CB HB2 sing N N 55 ALA CB HB3 sing N N 56 ALA OXT HXT sing N N 57 ARG N CA sing N N 58 ARG N H sing N N 59 ARG N H2 sing N N 60 ARG CA C sing N N 61 ARG CA CB sing N N 62 ARG CA HA sing N N 63 ARG C O doub N N 64 ARG C OXT sing N N 65 ARG CB CG sing N N 66 ARG CB HB2 sing N N 67 ARG CB HB3 sing N N 68 ARG CG CD sing N N 69 ARG CG HG2 sing N N 70 ARG CG HG3 sing N N 71 ARG CD NE sing N N 72 ARG CD HD2 sing N N 73 ARG CD HD3 sing N N 74 ARG NE CZ sing N N 75 ARG NE HE sing N N 76 ARG CZ NH1 sing N N 77 ARG CZ NH2 doub N N 78 ARG NH1 HH11 sing N N 79 ARG NH1 HH12 sing N N 80 ARG NH2 HH21 sing N N 81 ARG NH2 HH22 sing N N 82 ARG OXT HXT sing N N 83 ASN N CA sing N N 84 ASN N H sing N N 85 ASN N H2 sing N N 86 ASN CA C sing N N 87 ASN CA CB sing N N 88 ASN CA HA sing N N 89 ASN C O doub N N 90 ASN C OXT sing N N 91 ASN CB CG sing N N 92 ASN CB HB2 sing N N 93 ASN CB HB3 sing N N 94 ASN CG OD1 doub N N 95 ASN CG ND2 sing N N 96 ASN ND2 HD21 sing N N 97 ASN ND2 HD22 sing N N 98 ASN OXT HXT sing N N 99 ASP N CA sing N N 100 ASP N H sing N N 101 ASP N H2 sing N N 102 ASP CA C sing N N 103 ASP CA CB sing N N 104 ASP CA HA sing N N 105 ASP C O doub N N 106 ASP C OXT sing N N 107 ASP CB CG sing N N 108 ASP CB HB2 sing N N 109 ASP CB HB3 sing N N 110 ASP CG OD1 doub N N 111 ASP CG OD2 sing N N 112 ASP OD2 HD2 sing N N 113 ASP OXT HXT sing N N 114 CYS N CA sing N N 115 CYS N H sing N N 116 CYS N H2 sing N N 117 CYS CA C sing N N 118 CYS CA CB sing N N 119 CYS CA HA sing N N 120 CYS C O doub N N 121 CYS C OXT sing N N 122 CYS CB SG sing N N 123 CYS CB HB2 sing N N 124 CYS CB HB3 sing N N 125 CYS SG HG sing N N 126 CYS OXT HXT sing N N 127 G OP3 P sing N N 128 G OP3 HOP3 sing N N 129 G P OP1 doub N N 130 G P OP2 sing N N 131 G P "O5'" sing N N 132 G OP2 HOP2 sing N N 133 G "O5'" "C5'" sing N N 134 G "C5'" "C4'" sing N N 135 G "C5'" "H5'" sing N N 136 G "C5'" "H5''" sing N N 137 G "C4'" "O4'" sing N N 138 G "C4'" "C3'" sing N N 139 G "C4'" "H4'" sing N N 140 G "O4'" "C1'" sing N N 141 G "C3'" "O3'" sing N N 142 G "C3'" "C2'" sing N N 143 G "C3'" "H3'" sing N N 144 G "O3'" "HO3'" sing N N 145 G "C2'" "O2'" sing N N 146 G "C2'" "C1'" sing N N 147 G "C2'" "H2'" sing N N 148 G "O2'" "HO2'" sing N N 149 G "C1'" N9 sing N N 150 G "C1'" "H1'" sing N N 151 G N9 C8 sing Y N 152 G N9 C4 sing Y N 153 G C8 N7 doub Y N 154 G C8 H8 sing N N 155 G N7 C5 sing Y N 156 G C5 C6 sing N N 157 G C5 C4 doub Y N 158 G C6 O6 doub N N 159 G C6 N1 sing N N 160 G N1 C2 sing N N 161 G N1 H1 sing N N 162 G C2 N2 sing N N 163 G C2 N3 doub N N 164 G N2 H21 sing N N 165 G N2 H22 sing N N 166 G N3 C4 sing N N 167 GLN N CA sing N N 168 GLN N H sing N N 169 GLN N H2 sing N N 170 GLN CA C sing N N 171 GLN CA CB sing N N 172 GLN CA HA sing N N 173 GLN C O doub N N 174 GLN C OXT sing N N 175 GLN CB CG sing N N 176 GLN CB HB2 sing N N 177 GLN CB HB3 sing N N 178 GLN CG CD sing N N 179 GLN CG HG2 sing N N 180 GLN CG HG3 sing N N 181 GLN CD OE1 doub N N 182 GLN CD NE2 sing N N 183 GLN NE2 HE21 sing N N 184 GLN NE2 HE22 sing N N 185 GLN OXT HXT sing N N 186 GLU N CA sing N N 187 GLU N H sing N N 188 GLU N H2 sing N N 189 GLU CA C sing N N 190 GLU CA CB sing N N 191 GLU CA HA sing N N 192 GLU C O doub N N 193 GLU C OXT sing N N 194 GLU CB CG sing N N 195 GLU CB HB2 sing N N 196 GLU CB HB3 sing N N 197 GLU CG CD sing N N 198 GLU CG HG2 sing N N 199 GLU CG HG3 sing N N 200 GLU CD OE1 doub N N 201 GLU CD OE2 sing N N 202 GLU OE2 HE2 sing N N 203 GLU OXT HXT sing N N 204 GLY N CA sing N N 205 GLY N H sing N N 206 GLY N H2 sing N N 207 GLY CA C sing N N 208 GLY CA HA2 sing N N 209 GLY CA HA3 sing N N 210 GLY C O doub N N 211 GLY C OXT sing N N 212 GLY OXT HXT sing N N 213 HOH O H1 sing N N 214 HOH O H2 sing N N 215 ILE N CA sing N N 216 ILE N H sing N N 217 ILE N H2 sing N N 218 ILE CA C sing N N 219 ILE CA CB sing N N 220 ILE CA HA sing N N 221 ILE C O doub N N 222 ILE C OXT sing N N 223 ILE CB CG1 sing N N 224 ILE CB CG2 sing N N 225 ILE CB HB sing N N 226 ILE CG1 CD1 sing N N 227 ILE CG1 HG12 sing N N 228 ILE CG1 HG13 sing N N 229 ILE CG2 HG21 sing N N 230 ILE CG2 HG22 sing N N 231 ILE CG2 HG23 sing N N 232 ILE CD1 HD11 sing N N 233 ILE CD1 HD12 sing N N 234 ILE CD1 HD13 sing N N 235 ILE OXT HXT sing N N 236 LEU N CA sing N N 237 LEU N H sing N N 238 LEU N H2 sing N N 239 LEU CA C sing N N 240 LEU CA CB sing N N 241 LEU CA HA sing N N 242 LEU C O doub N N 243 LEU C OXT sing N N 244 LEU CB CG sing N N 245 LEU CB HB2 sing N N 246 LEU CB HB3 sing N N 247 LEU CG CD1 sing N N 248 LEU CG CD2 sing N N 249 LEU CG HG sing N N 250 LEU CD1 HD11 sing N N 251 LEU CD1 HD12 sing N N 252 LEU CD1 HD13 sing N N 253 LEU CD2 HD21 sing N N 254 LEU CD2 HD22 sing N N 255 LEU CD2 HD23 sing N N 256 LEU OXT HXT sing N N 257 LYS N CA sing N N 258 LYS N H sing N N 259 LYS N H2 sing N N 260 LYS CA C sing N N 261 LYS CA CB sing N N 262 LYS CA HA sing N N 263 LYS C O doub N N 264 LYS C OXT sing N N 265 LYS CB CG sing N N 266 LYS CB HB2 sing N N 267 LYS CB HB3 sing N N 268 LYS CG CD sing N N 269 LYS CG HG2 sing N N 270 LYS CG HG3 sing N N 271 LYS CD CE sing N N 272 LYS CD HD2 sing N N 273 LYS CD HD3 sing N N 274 LYS CE NZ sing N N 275 LYS CE HE2 sing N N 276 LYS CE HE3 sing N N 277 LYS NZ HZ1 sing N N 278 LYS NZ HZ2 sing N N 279 LYS NZ HZ3 sing N N 280 LYS OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TRP N CA sing N N 351 TRP N H sing N N 352 TRP N H2 sing N N 353 TRP CA C sing N N 354 TRP CA CB sing N N 355 TRP CA HA sing N N 356 TRP C O doub N N 357 TRP C OXT sing N N 358 TRP CB CG sing N N 359 TRP CB HB2 sing N N 360 TRP CB HB3 sing N N 361 TRP CG CD1 doub Y N 362 TRP CG CD2 sing Y N 363 TRP CD1 NE1 sing Y N 364 TRP CD1 HD1 sing N N 365 TRP CD2 CE2 doub Y N 366 TRP CD2 CE3 sing Y N 367 TRP NE1 CE2 sing Y N 368 TRP NE1 HE1 sing N N 369 TRP CE2 CZ2 sing Y N 370 TRP CE3 CZ3 doub Y N 371 TRP CE3 HE3 sing N N 372 TRP CZ2 CH2 doub Y N 373 TRP CZ2 HZ2 sing N N 374 TRP CZ3 CH2 sing Y N 375 TRP CZ3 HZ3 sing N N 376 TRP CH2 HH2 sing N N 377 TRP OXT HXT sing N N 378 TYR N CA sing N N 379 TYR N H sing N N 380 TYR N H2 sing N N 381 TYR CA C sing N N 382 TYR CA CB sing N N 383 TYR CA HA sing N N 384 TYR C O doub N N 385 TYR C OXT sing N N 386 TYR CB CG sing N N 387 TYR CB HB2 sing N N 388 TYR CB HB3 sing N N 389 TYR CG CD1 doub Y N 390 TYR CG CD2 sing Y N 391 TYR CD1 CE1 sing Y N 392 TYR CD1 HD1 sing N N 393 TYR CD2 CE2 doub Y N 394 TYR CD2 HD2 sing N N 395 TYR CE1 CZ doub Y N 396 TYR CE1 HE1 sing N N 397 TYR CE2 CZ sing Y N 398 TYR CE2 HE2 sing N N 399 TYR CZ OH sing N N 400 TYR OH HH sing N N 401 TYR OXT HXT sing N N 402 VAL N CA sing N N 403 VAL N H sing N N 404 VAL N H2 sing N N 405 VAL CA C sing N N 406 VAL CA CB sing N N 407 VAL CA HA sing N N 408 VAL C O doub N N 409 VAL C OXT sing N N 410 VAL CB CG1 sing N N 411 VAL CB CG2 sing N N 412 VAL CB HB sing N N 413 VAL CG1 HG11 sing N N 414 VAL CG1 HG12 sing N N 415 VAL CG1 HG13 sing N N 416 VAL CG2 HG21 sing N N 417 VAL CG2 HG22 sing N N 418 VAL CG2 HG23 sing N N 419 VAL OXT HXT sing N N 420 # _em_admin.entry_id 6SAG _em_admin.current_status REL _em_admin.deposition_date 2019-07-16 _em_admin.deposition_site PDBE _em_admin.last_update 2024-10-23 _em_admin.map_release_date 2019-09-18 _em_admin.title 'Cryo-EM structure of TMV with Ca2+ at low pH' # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 0.1 M NaOAc 'sodium acetate' 1 2 20 mM CaCl2 'calcium chloride' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 12243 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Tobacco mosaic virus (strain vulgare)' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.angular_rotation_per_subunit 22.036 _em_helical_entity.axial_rise_per_subunit 1.405 _em_helical_entity.axial_symmetry C1 _em_helical_entity.details ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 41.3 _em_image_recording.average_exposure_time 4 _em_image_recording.details ? _em_image_recording.detector_mode SUPER-RESOLUTION _em_image_recording.film_or_detector_model 'GATAN K2 QUANTUM (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 197 # _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_name 'GIF Quantum LS' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 16170 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? SPRING ? 1 ? ? 2 'IMAGE ACQUISITION' ? SerialEM ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? Gctf ? 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' ? ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'INITIAL EULER ASSIGNMENT' ? RELION 3 1 ? ? 10 'FINAL EULER ASSIGNMENT' ? RELION 3 1 ? ? 11 CLASSIFICATION ? ? ? 1 ? ? 12 RECONSTRUCTION ? RELION 3 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? 14 'VOLUME SELECTION' ? ? ? 1 1 1 15 'SERIES ALIGNMENT' ? ? ? 1 1 1 16 'MOLECULAR REPLACEMENT' ? ? ? 1 1 1 17 'LATTICE DISTORTION CORRECTION' ? ? ? 1 1 1 18 'SYMMETRY DETERMINATION' ? ? ? 1 1 1 19 'CRYSTALLOGRAPHY MERGING' ? ? ? 1 1 1 # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 1.1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.id 1 _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.ncbi_tax_id 4097 _em_virus_natural_host.organism 'Nicotiana tabacum' _em_virus_natural_host.strain ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4UDV # _atom_sites.entry_id 6SAG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA MG N O P S # loop_