HEADER HYDROLASE 17-JUL-19 6SAO TITLE STRUCTURAL AND FUNCTIONAL CHARACTERISATION OF THREE NOVEL FUNGAL TITLE 2 AMYLASES WITH ENHANCED STABILITY AND PH TOLERANCE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THAMNIDIUM ELEGANS; SOURCE 3 ORGANISM_TAXID: 101142; SOURCE 4 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS BIOTECHNOLOGY, AMYLASE, COMPLEX, FUNGAL, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.ROTH,O.V.MOROZ,J.P.TURKENBURG,E.BLAGOVA,J.WATERMAN,A.ARIZA,L.MING, AUTHOR 2 S.TIANQI,C.ANDERSEN,G.J.DAVIES,K.S.WILSON REVDAT 3 29-JUL-20 6SAO 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 30-OCT-19 6SAO 1 JRNL REVDAT 1 23-OCT-19 6SAO 0 JRNL AUTH C.ROTH,O.V.MOROZ,J.P.TURKENBURG,E.BLAGOVA,J.WATERMAN, JRNL AUTH 2 A.ARIZA,L.MING,S.TIANQI,C.ANDERSEN,G.J.DAVIES,K.S.WILSON JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF THREE NOVEL JRNL TITL 2 FUNGAL AMYLASES WITH ENHANCED STABILITY AND PH TOLERANCE. JRNL REF INT J MOL SCI V. 20 2019 JRNL REFN ESSN 1422-0067 JRNL PMID 31623309 JRNL DOI 10.3390/IJMS20194902 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 143033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.111 REMARK 3 R VALUE (WORKING SET) : 0.110 REMARK 3 FREE R VALUE : 0.134 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7574 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10245 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 539 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3363 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 566 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : 1.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.027 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.028 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.079 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.986 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.982 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3812 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3307 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5241 ; 1.937 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7764 ; 1.701 ; 1.600 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 504 ; 6.709 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;35.908 ;21.186 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 515 ;11.486 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.734 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 532 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4332 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 788 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3812 ; 4.712 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6SAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 150753 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 48.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATRIUMPHOSPHATE, AMMONIUM SULPHATE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.50750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.00600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.31650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.00600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.50750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.31650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 439 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 879 O HOH A 906 1.41 REMARK 500 OH TYR A 40 O HOH A 601 1.65 REMARK 500 O SER A 124 O HOH A 602 1.85 REMARK 500 OD2 ASP A 5 O HOH A 603 1.89 REMARK 500 OG SER A 201 O HOH A 604 1.94 REMARK 500 O HOH A 615 O HOH A 1112 1.98 REMARK 500 O HOH A 624 O HOH A 1047 2.02 REMARK 500 O HOH A 892 O HOH A 911 2.03 REMARK 500 NZ LYS A 7 O HOH A 605 2.05 REMARK 500 O HOH A 766 O HOH A 1079 2.11 REMARK 500 O2 SO4 A 504 O HOH A 606 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1025 O HOH A 1115 1655 1.96 REMARK 500 O HOH A 634 O HOH A 906 3445 2.02 REMARK 500 O SER A 124 O HOH A 604 4445 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 125 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 75 62.81 -115.62 REMARK 500 LYS A 77 -78.72 -108.55 REMARK 500 ASP A 155 26.67 44.11 REMARK 500 ASP A 155 -18.78 79.34 REMARK 500 ASP A 156 3.78 -150.98 REMARK 500 ARG A 196 133.46 -38.42 REMARK 500 ARG A 196 131.81 -38.42 REMARK 500 LYS A 319 19.81 -144.40 REMARK 500 ASP A 323 121.98 -37.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 294 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 21 -10.93 REMARK 500 SER A 124 -11.57 REMARK 500 SER A 124 13.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1166 DISTANCE = 6.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 515 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 113 OD1 REMARK 620 2 GLU A 149 O 152.3 REMARK 620 3 ASP A 159 OD1 77.1 119.3 REMARK 620 4 ASP A 159 OD2 126.4 77.9 52.0 REMARK 620 5 HIS A 194 O 75.6 77.9 138.1 154.5 REMARK 620 6 HOH A 820 O 72.9 130.2 76.8 79.4 123.3 REMARK 620 7 HOH A 824 O 115.1 69.1 138.1 96.3 82.8 70.1 REMARK 620 8 HOH A 839 O 91.5 76.4 68.2 85.0 81.3 144.1 144.3 REMARK 620 N 1 2 3 4 5 6 7 DBREF 6SAO A 1 439 PDB 6SAO 6SAO 1 439 SEQRES 1 A 439 ALA ALA ALA ALA ASP TRP LYS SER ARG SER ILE TYR GLN SEQRES 2 A 439 LEU VAL THR ASP ARG PHE GLY ARG SER ASP GLY SER THR SEQRES 3 A 439 SER ALA CYS GLY ASP LEU SER ASN TYR CYS GLY GLY ASP SEQRES 4 A 439 TYR LYS GLY ILE GLN ASN GLN LEU ASP TYR ILE ALA GLY SEQRES 5 A 439 MET GLY PHE ASP ALA ILE TRP ILE SER PRO ILE PRO GLU SEQRES 6 A 439 ASN THR ASP GLY GLY TYR HIS GLY TYR TRP ALA LYS ASP SEQRES 7 A 439 PHE GLU LYS LEU ASN THR ASN PHE GLY SER ALA ASP ASP SEQRES 8 A 439 LEU LYS ALA LEU VAL THR ALA ALA HIS GLY LYS GLY MET SEQRES 9 A 439 TYR VAL MET LEU ASP VAL VAL ALA ASN HIS ALA GLY PRO SEQRES 10 A 439 ALA SER GLY GLY ASP TYR SER GLY PHE THR PHE SER SER SEQRES 11 A 439 ALA SER ASN TYR HIS PRO GLN CYS THR ILE ASP TYR ASP SEQRES 12 A 439 ASN GLN THR SER VAL GLU GLN CYS TRP VAL ALA ASP ASP SEQRES 13 A 439 LEU PRO ASP ILE ASN THR GLU ASP ASP THR ILE VAL SER SEQRES 14 A 439 LYS LEU HIS SER ILE VAL SER ASP TRP VAL THR THR TYR SEQRES 15 A 439 ASP PHE ASP GLY ILE ARG ILE ASP THR VAL LYS HIS ILE SEQRES 16 A 439 ARG LYS ASP PHE TRP SER GLY TYR GLU GLU ALA ALA GLY SEQRES 17 A 439 VAL PHE ALA THR GLY GLU VAL PHE ASP GLY ASP ALA ALA SEQRES 18 A 439 TYR VAL GLY PRO TYR GLN ASP GLN LEU SER SER LEU ILE SEQRES 19 A 439 ASN TYR PRO LEU TYR TYR ALA ILE ARG ASP VAL PHE SER SEQRES 20 A 439 ALA GLY SER GLY PHE SER ARG ILE SER ASP MET LEU SER SEQRES 21 A 439 THR ILE LYS SER ASN PHE LYS ASP PRO SER VAL LEU THR SEQRES 22 A 439 THR PHE VAL ASP ASN GLN ASP ASN ALA ARG PHE LEU SER SEQRES 23 A 439 VAL LYS SER ASP MET SER LEU TYR LYS ASN ALA LEU ALA SEQRES 24 A 439 PHE THR ILE LEU THR GLU GLY ILE PRO VAL VAL TYR TYR SEQRES 25 A 439 GLY THR GLU GLN GLY PHE LYS GLY GLY ASP ASP PRO LYS SEQRES 26 A 439 ASN ARG GLU VAL LEU TRP THR SER ASN TYR ASP THR SER SEQRES 27 A 439 SER ASP LEU TYR LYS PHE ILE LYS ILE VAL ASN ASN ASP SEQRES 28 A 439 VAL ARG GLN LYS SER ASP LYS THR VAL THR LEU ASP VAL SEQRES 29 A 439 ASP VAL GLY THR ASN THR TYR ALA PHE THR HIS GLY LYS SEQRES 30 A 439 ASN LEU ILE VAL VAL ASN ASN TYR GLY SER GLY SER THR SEQRES 31 A 439 GLU SER VAL THR VAL LYS VAL GLY ASP SER VAL ALA ASP SEQRES 32 A 439 GLY THR LYS LEU VAL ASP ALA VAL SER ASN ILE THR ALA SEQRES 33 A 439 THR VAL SER GLY GLY SER ILE THR PHE SER LEU LYS ASP SEQRES 34 A 439 GLY LEU PRO ALA LEU PHE VAL PRO SER SER HET BGC B 1 12 HET GLC B 2 11 HET AC1 B 3 21 HET GLC B 4 11 HET AC1 B 5 21 HET NAG A 501 14 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 10 HET EDO A 510 4 HET EDO A 511 4 HET SO4 A 512 5 HET SO4 A 513 5 HET SO4 A 514 5 HET CA A 515 1 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM AC1 4,6-DIDEOXY-4-{[(1S,4R,5S,6S)-4,5,6-TRIHYDROXY-3- HETNAM 2 AC1 (HYDROXYMETHYL)CYCLOHEX-2-EN-1-YL]AMINO}-ALPHA-D- HETNAM 3 AC1 GLUCOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CA CALCIUM ION HETSYN AC1 N-[4-HYDROXYMETHYL-CYCLOHEXAN-6-YL-1,2,3-TRIOL]-4,6- HETSYN 2 AC1 DIDEOXY-4-AMINOGLUCOPYRANOSIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 BGC C6 H12 O6 FORMUL 2 GLC 2(C6 H12 O6) FORMUL 2 AC1 2(C13 H23 N O8) FORMUL 3 NAG C8 H15 N O6 FORMUL 4 SO4 6(O4 S 2-) FORMUL 7 EDO 2(C2 H6 O2) FORMUL 12 CA CA 2+ FORMUL 13 HOH *566(H2 O) HELIX 1 AA1 ALA A 2 LYS A 7 1 6 HELIX 2 AA2 VAL A 15 GLY A 20 1 6 HELIX 3 AA3 ASP A 39 ASN A 45 1 7 HELIX 4 AA4 GLN A 46 MET A 53 1 8 HELIX 5 AA5 ASN A 83 GLY A 87 5 5 HELIX 6 AA6 SER A 88 LYS A 102 1 15 HELIX 7 AA7 ALA A 118 ASP A 122 5 5 HELIX 8 AA8 SER A 130 TYR A 134 5 5 HELIX 9 AA9 ASN A 144 CYS A 151 1 8 HELIX 10 AB1 TRP A 152 ASP A 156 5 5 HELIX 11 AB2 ASP A 164 ASP A 183 1 20 HELIX 12 AB3 THR A 191 ILE A 195 5 5 HELIX 13 AB4 ARG A 196 LYS A 197 5 2 HELIX 14 AB5 ASP A 198 GLY A 208 1 11 HELIX 15 AB6 ASP A 219 GLY A 224 1 6 HELIX 16 AB7 PRO A 225 GLN A 229 5 5 HELIX 17 AB8 ASN A 235 GLY A 249 1 15 HELIX 18 AB9 PHE A 252 PHE A 266 1 15 HELIX 19 AC1 ASP A 268 VAL A 271 5 4 HELIX 20 AC2 ARG A 283 LYS A 288 1 6 HELIX 21 AC3 ASP A 290 THR A 304 1 15 HELIX 22 AC4 GLY A 313 GLY A 317 5 5 HELIX 23 AC5 LEU A 330 ASN A 334 5 5 HELIX 24 AC6 SER A 339 ASN A 350 1 12 SHEET 1 AA1 8 SER A 232 LEU A 233 0 SHEET 2 AA1 8 PHE A 210 GLY A 213 1 N GLY A 213 O SER A 232 SHEET 3 AA1 8 GLY A 186 ILE A 189 1 N ILE A 189 O THR A 212 SHEET 4 AA1 8 TYR A 105 VAL A 110 1 N VAL A 110 O ARG A 188 SHEET 5 AA1 8 ALA A 57 ILE A 60 1 N ILE A 58 O MET A 107 SHEET 6 AA1 8 ILE A 11 GLN A 13 1 N TYR A 12 O ALA A 57 SHEET 7 AA1 8 ILE A 307 TYR A 311 1 O PRO A 308 N ILE A 11 SHEET 8 AA1 8 THR A 273 THR A 274 1 N THR A 274 O VAL A 309 SHEET 1 AA2 6 VAL A 360 VAL A 366 0 SHEET 2 AA2 6 THR A 370 HIS A 375 -1 O ALA A 372 N ASP A 365 SHEET 3 AA2 6 ASN A 378 ASN A 383 -1 O ILE A 380 N PHE A 373 SHEET 4 AA2 6 ALA A 433 PRO A 437 -1 O ALA A 433 N VAL A 381 SHEET 5 AA2 6 LYS A 406 ASP A 409 -1 N VAL A 408 O VAL A 436 SHEET 6 AA2 6 THR A 415 THR A 417 -1 O ALA A 416 N LEU A 407 SHEET 1 AA3 2 SER A 392 LYS A 396 0 SHEET 2 AA3 2 SER A 422 SER A 426 -1 O PHE A 425 N VAL A 393 SSBOND 1 CYS A 29 CYS A 36 1555 1555 2.18 SSBOND 2 CYS A 138 CYS A 151 1555 1555 2.15 LINK ND2 ASN A 144 C1 NAG A 501 1555 1555 1.44 LINK O4 BGC B 1 C1 GLC B 2 1555 1555 1.47 LINK O4 GLC B 2 C1 AC1 B 3 1555 1555 1.42 LINK O4 AC1 B 3 C1 GLC B 4 1555 1555 1.43 LINK O4 GLC B 4 C1 AC1 B 5 1555 1555 1.50 LINK OD1 ASN A 113 CA CA A 515 1555 1555 2.38 LINK O GLU A 149 CA CA A 515 1555 1555 2.43 LINK OD1 ASP A 159 CA CA A 515 1555 1555 2.60 LINK OD2 ASP A 159 CA CA A 515 1555 1555 2.45 LINK O HIS A 194 CA CA A 515 1555 1555 2.36 LINK CA CA A 515 O HOH A 820 1555 1555 2.44 LINK CA CA A 515 O HOH A 824 1555 1555 2.47 LINK CA CA A 515 O HOH A 839 1555 1555 2.49 CISPEP 1 ASP A 323 PRO A 324 0 14.64 CRYST1 51.015 56.633 166.012 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019602 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017658 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006024 0.00000