HEADER TOXIN 18-JUL-19 6SB1 TITLE CRYSTAL STRUCTURE OF MURINE PERFORIN-2 P2 DOMAIN CRYSTAL FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE-EXPRESSED GENE 1 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MPG-1,PERFORIN-2,P-2,PROTEIN MPS1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MPEG1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS PORE-FORMING PROTEIN, PERFORIN, MACPF, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR T.NI,L.GINGER,R.J.C.GILBERT REVDAT 3 06-NOV-24 6SB1 1 REMARK REVDAT 2 26-FEB-20 6SB1 1 JRNL REVDAT 1 05-FEB-20 6SB1 0 JRNL AUTH T.NI,F.JIAO,X.YU,S.ADEN,L.GINGER,S.I.WILLIAMS,F.BAI, JRNL AUTH 2 V.PRAZAK,D.KARIA,P.STANSFELD,P.ZHANG,G.MUNSON,G.ANDERLUH, JRNL AUTH 3 S.SCHEURING,R.J.C.GILBERT JRNL TITL STRUCTURE AND MECHANISM OF BACTERICIDAL MAMMALIAN JRNL TITL 2 PERFORIN-2, AN ANCIENT AGENT OF INNATE IMMUNITY. JRNL REF SCI ADV V. 6 X8286 2020 JRNL REFN ESSN 2375-2548 JRNL PMID 32064340 JRNL DOI 10.1126/SCIADV.AAX8286 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2645 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 28948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1432 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.8100 - 4.4160 0.99 2883 144 0.1843 0.1921 REMARK 3 2 4.4160 - 3.5052 0.99 2775 146 0.1865 0.2393 REMARK 3 3 3.5052 - 3.0622 1.00 2784 146 0.2050 0.2393 REMARK 3 4 3.0622 - 2.7822 1.00 2777 120 0.2336 0.2718 REMARK 3 5 2.7822 - 2.5828 0.99 2697 165 0.2574 0.3123 REMARK 3 6 2.5828 - 2.4305 0.99 2734 141 0.2547 0.2907 REMARK 3 7 2.4305 - 2.3088 0.99 2720 160 0.2426 0.2784 REMARK 3 8 2.3088 - 2.2083 0.99 2686 138 0.2760 0.2914 REMARK 3 9 2.2083 - 2.1233 0.99 2752 130 0.2916 0.3061 REMARK 3 10 2.1233 - 2.0500 0.99 2708 142 0.3280 0.3741 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3089 REMARK 3 ANGLE : 1.093 4181 REMARK 3 CHIRALITY : 0.061 455 REMARK 3 PLANARITY : 0.007 533 REMARK 3 DIHEDRAL : 15.033 1851 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1037 28.5733 60.4460 REMARK 3 T TENSOR REMARK 3 T11: 0.5399 T22: 0.2396 REMARK 3 T33: 0.3989 T12: 0.0224 REMARK 3 T13: 0.0971 T23: -0.0579 REMARK 3 L TENSOR REMARK 3 L11: 8.9351 L22: 7.7789 REMARK 3 L33: 4.7413 L12: 5.7192 REMARK 3 L13: -2.6688 L23: -2.4125 REMARK 3 S TENSOR REMARK 3 S11: 0.5436 S12: -0.5690 S13: 1.0642 REMARK 3 S21: 0.4819 S22: -0.2109 S23: 0.6261 REMARK 3 S31: -0.4435 S32: 0.2603 S33: -0.2645 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 413 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9701 21.7875 69.6138 REMARK 3 T TENSOR REMARK 3 T11: 0.6934 T22: 0.3983 REMARK 3 T33: 0.6817 T12: -0.0164 REMARK 3 T13: 0.2290 T23: -0.0703 REMARK 3 L TENSOR REMARK 3 L11: 7.1785 L22: 1.6404 REMARK 3 L33: 5.0903 L12: -1.3464 REMARK 3 L13: -4.8390 L23: 1.0371 REMARK 3 S TENSOR REMARK 3 S11: -0.2281 S12: -0.2395 S13: -0.2134 REMARK 3 S21: 0.4018 S22: -0.0699 S23: 0.6729 REMARK 3 S31: 0.2301 S32: -0.3339 S33: 0.2155 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 465 THROUGH 579 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.1427 22.2774 63.3080 REMARK 3 T TENSOR REMARK 3 T11: 0.5064 T22: 0.4933 REMARK 3 T33: 0.5488 T12: 0.0905 REMARK 3 T13: -0.1621 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 8.5692 L22: 8.7393 REMARK 3 L33: 5.6067 L12: 1.9855 REMARK 3 L13: 0.1069 L23: 1.6581 REMARK 3 S TENSOR REMARK 3 S11: -0.3202 S12: -1.0113 S13: -0.5060 REMARK 3 S21: 0.5847 S22: 0.2395 S23: -1.4424 REMARK 3 S31: 0.0052 S32: 0.8836 S33: 0.0660 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 374 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2872 13.0056 95.6421 REMARK 3 T TENSOR REMARK 3 T11: 0.5180 T22: 0.2362 REMARK 3 T33: 0.3526 T12: -0.0135 REMARK 3 T13: 0.0601 T23: 0.0394 REMARK 3 L TENSOR REMARK 3 L11: 6.2694 L22: 8.9924 REMARK 3 L33: 2.7556 L12: -2.6717 REMARK 3 L13: 0.8366 L23: 1.6294 REMARK 3 S TENSOR REMARK 3 S11: 0.4914 S12: 0.1073 S13: 0.6914 REMARK 3 S21: -0.2629 S22: -0.2746 S23: 0.1075 REMARK 3 S31: -0.4991 S32: -0.0865 S33: -0.1845 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 413 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.7547 6.1587 85.4148 REMARK 3 T TENSOR REMARK 3 T11: 0.5817 T22: 0.3623 REMARK 3 T33: 0.5494 T12: -0.0187 REMARK 3 T13: 0.1425 T23: 0.0694 REMARK 3 L TENSOR REMARK 3 L11: 7.6177 L22: 2.1178 REMARK 3 L33: 5.2744 L12: -0.1322 REMARK 3 L13: -5.3490 L23: -0.1472 REMARK 3 S TENSOR REMARK 3 S11: -0.4213 S12: 0.0526 S13: -0.4311 REMARK 3 S21: -0.3465 S22: -0.1028 S23: -0.4456 REMARK 3 S31: 0.2523 S32: 0.3780 S33: 0.4212 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 465 THROUGH 474 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7473 17.8783 106.2795 REMARK 3 T TENSOR REMARK 3 T11: 1.6884 T22: 1.2469 REMARK 3 T33: 1.6180 T12: 0.5036 REMARK 3 T13: 0.4603 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 2.2406 L22: 6.7430 REMARK 3 L33: 6.4998 L12: -2.9490 REMARK 3 L13: 3.1733 L23: -6.5728 REMARK 3 S TENSOR REMARK 3 S11: 0.1098 S12: -1.7084 S13: 1.0252 REMARK 3 S21: 3.8994 S22: 1.5942 S23: 3.9122 REMARK 3 S31: -3.6943 S32: -3.7614 S33: -1.3597 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 475 THROUGH 579 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1614 6.1506 92.3161 REMARK 3 T TENSOR REMARK 3 T11: 0.4858 T22: 0.6311 REMARK 3 T33: 0.7889 T12: -0.1419 REMARK 3 T13: -0.0869 T23: -0.1387 REMARK 3 L TENSOR REMARK 3 L11: 7.0384 L22: 7.3290 REMARK 3 L33: 6.1917 L12: -0.4231 REMARK 3 L13: -0.6185 L23: 0.3863 REMARK 3 S TENSOR REMARK 3 S11: -0.5487 S12: 1.2059 S13: -0.6382 REMARK 3 S21: -0.3912 S22: 0.0874 S23: 1.5920 REMARK 3 S31: 0.2985 S32: -1.0085 S33: 0.3748 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 376 THROUGH 538 OR REMARK 3 RESID 549 THROUGH 579)) REMARK 3 SELECTION : (CHAIN B AND RESID 376 THROUGH 579) REMARK 3 ATOM PAIRS NUMBER : 1815 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SB1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 58.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH6.0, 10% PEG6000, 4MM L REMARK 280 -CYSTEINE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.63500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 346 REMARK 465 THR A 347 REMARK 465 GLY A 348 REMARK 465 GLY A 349 REMARK 465 CYS A 350 REMARK 465 THR A 351 REMARK 465 ASN A 352 REMARK 465 VAL A 353 REMARK 465 ASP A 354 REMARK 465 SER A 355 REMARK 465 PRO A 356 REMARK 465 ASN A 357 REMARK 465 PHE A 358 REMARK 465 ASN A 359 REMARK 465 PHE A 360 REMARK 465 GLN A 361 REMARK 465 ALA A 362 REMARK 465 ASN A 363 REMARK 465 MET A 364 REMARK 465 ASP A 365 REMARK 465 ASP A 366 REMARK 465 ASP A 367 REMARK 465 SER A 368 REMARK 465 CYS A 369 REMARK 465 ASP A 370 REMARK 465 ALA A 371 REMARK 465 LYS A 372 REMARK 465 VAL A 373 REMARK 465 THR A 374 REMARK 465 ASN A 375 REMARK 465 SER A 540 REMARK 465 ASP A 541 REMARK 465 THR A 542 REMARK 465 ALA A 543 REMARK 465 LYS A 544 REMARK 465 ASP A 545 REMARK 465 VAL A 546 REMARK 465 ARG A 547 REMARK 465 PHE A 580 REMARK 465 THR A 581 REMARK 465 GLY A 582 REMARK 465 GLY A 583 REMARK 465 SER A 584 REMARK 465 LEU A 585 REMARK 465 LEU A 586 REMARK 465 PRO A 587 REMARK 465 VAL A 588 REMARK 465 ARG A 589 REMARK 465 LEU A 590 REMARK 465 PRO A 591 REMARK 465 PRO A 592 REMARK 465 TYR A 593 REMARK 465 THR A 594 REMARK 465 LYS A 595 REMARK 465 PRO A 596 REMARK 465 PRO A 597 REMARK 465 LEU A 598 REMARK 465 MET A 599 REMARK 465 SER A 600 REMARK 465 GLN A 601 REMARK 465 VAL A 602 REMARK 465 ALA A 603 REMARK 465 THR A 604 REMARK 465 ASN A 605 REMARK 465 THR A 606 REMARK 465 VAL A 607 REMARK 465 ILE A 608 REMARK 465 VAL A 609 REMARK 465 THR A 610 REMARK 465 ASN A 611 REMARK 465 SER A 612 REMARK 465 GLU A 613 REMARK 465 THR A 614 REMARK 465 ALA A 615 REMARK 465 ARG A 616 REMARK 465 SER A 617 REMARK 465 TRP A 618 REMARK 465 ILE A 619 REMARK 465 LYS A 620 REMARK 465 ASP A 621 REMARK 465 PRO A 622 REMARK 465 GLN A 623 REMARK 465 THR A 624 REMARK 465 ASN A 625 REMARK 465 GLN A 626 REMARK 465 TRP A 627 REMARK 465 LYS A 628 REMARK 465 LEU A 629 REMARK 465 GLY A 630 REMARK 465 GLU A 631 REMARK 465 GLY A 632 REMARK 465 THR A 633 REMARK 465 LYS A 634 REMARK 465 HIS A 635 REMARK 465 HIS A 636 REMARK 465 HIS A 637 REMARK 465 HIS A 638 REMARK 465 HIS A 639 REMARK 465 HIS A 640 REMARK 465 GLU B 346 REMARK 465 THR B 347 REMARK 465 GLY B 348 REMARK 465 GLY B 349 REMARK 465 CYS B 350 REMARK 465 THR B 351 REMARK 465 ASN B 352 REMARK 465 VAL B 353 REMARK 465 ASP B 354 REMARK 465 SER B 355 REMARK 465 PRO B 356 REMARK 465 ASN B 357 REMARK 465 PHE B 358 REMARK 465 ASN B 359 REMARK 465 PHE B 360 REMARK 465 GLN B 361 REMARK 465 ALA B 362 REMARK 465 ASN B 363 REMARK 465 MET B 364 REMARK 465 ASP B 365 REMARK 465 ASP B 366 REMARK 465 ASP B 367 REMARK 465 SER B 368 REMARK 465 CYS B 369 REMARK 465 ASP B 370 REMARK 465 ALA B 371 REMARK 465 LYS B 372 REMARK 465 VAL B 373 REMARK 465 ASN B 539 REMARK 465 SER B 540 REMARK 465 ASP B 541 REMARK 465 THR B 542 REMARK 465 ALA B 543 REMARK 465 LYS B 544 REMARK 465 ASP B 545 REMARK 465 VAL B 546 REMARK 465 ARG B 547 REMARK 465 ALA B 548 REMARK 465 PHE B 580 REMARK 465 THR B 581 REMARK 465 GLY B 582 REMARK 465 GLY B 583 REMARK 465 SER B 584 REMARK 465 LEU B 585 REMARK 465 LEU B 586 REMARK 465 PRO B 587 REMARK 465 VAL B 588 REMARK 465 ARG B 589 REMARK 465 LEU B 590 REMARK 465 PRO B 591 REMARK 465 PRO B 592 REMARK 465 TYR B 593 REMARK 465 THR B 594 REMARK 465 LYS B 595 REMARK 465 PRO B 596 REMARK 465 PRO B 597 REMARK 465 LEU B 598 REMARK 465 MET B 599 REMARK 465 SER B 600 REMARK 465 GLN B 601 REMARK 465 VAL B 602 REMARK 465 ALA B 603 REMARK 465 THR B 604 REMARK 465 ASN B 605 REMARK 465 THR B 606 REMARK 465 VAL B 607 REMARK 465 ILE B 608 REMARK 465 VAL B 609 REMARK 465 THR B 610 REMARK 465 ASN B 611 REMARK 465 SER B 612 REMARK 465 GLU B 613 REMARK 465 THR B 614 REMARK 465 ALA B 615 REMARK 465 ARG B 616 REMARK 465 SER B 617 REMARK 465 TRP B 618 REMARK 465 ILE B 619 REMARK 465 LYS B 620 REMARK 465 ASP B 621 REMARK 465 PRO B 622 REMARK 465 GLN B 623 REMARK 465 THR B 624 REMARK 465 ASN B 625 REMARK 465 GLN B 626 REMARK 465 TRP B 627 REMARK 465 LYS B 628 REMARK 465 LEU B 629 REMARK 465 GLY B 630 REMARK 465 GLU B 631 REMARK 465 GLY B 632 REMARK 465 THR B 633 REMARK 465 LYS B 634 REMARK 465 HIS B 635 REMARK 465 HIS B 636 REMARK 465 HIS B 637 REMARK 465 HIS B 638 REMARK 465 HIS B 639 REMARK 465 HIS B 640 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 443 O HOH B 801 2.13 REMARK 500 NE2 GLN B 570 OG SER B 572 2.14 REMARK 500 NE2 GLN A 570 OG SER A 572 2.16 REMARK 500 O HOH B 814 O HOH B 843 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 811 O HOH B 837 2647 2.08 REMARK 500 O HOH A 803 O HOH A 835 1545 2.09 REMARK 500 O HOH A 812 O HOH A 828 2556 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 391 40.93 -149.17 REMARK 500 LEU A 419 148.58 -171.98 REMARK 500 VAL A 468 -153.61 35.42 REMARK 500 PHE A 504 -153.82 54.92 REMARK 500 ASP B 391 39.97 -148.21 REMARK 500 ASP B 470 -134.98 -122.24 REMARK 500 PHE B 504 -152.46 55.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 701 DBREF 6SB1 A 349 631 UNP A1L314 MPEG1_MOUSE 349 631 DBREF 6SB1 B 349 631 UNP A1L314 MPEG1_MOUSE 349 631 SEQADV 6SB1 GLU A 346 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 THR A 347 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 GLY A 348 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 GLY A 632 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 THR A 633 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 LYS A 634 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 HIS A 635 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 HIS A 636 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 HIS A 637 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 HIS A 638 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 HIS A 639 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 HIS A 640 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 GLU B 346 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 THR B 347 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 GLY B 348 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 GLY B 632 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 THR B 633 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 LYS B 634 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 HIS B 635 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 HIS B 636 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 HIS B 637 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 HIS B 638 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 HIS B 639 UNP A1L314 EXPRESSION TAG SEQADV 6SB1 HIS B 640 UNP A1L314 EXPRESSION TAG SEQRES 1 A 295 GLU THR GLY GLY CYS THR ASN VAL ASP SER PRO ASN PHE SEQRES 2 A 295 ASN PHE GLN ALA ASN MET ASP ASP ASP SER CYS ASP ALA SEQRES 3 A 295 LYS VAL THR ASN PHE THR PHE GLY GLY VAL TYR GLN GLU SEQRES 4 A 295 CYS THR GLU LEU SER GLY ASP VAL LEU CYS GLN ASN LEU SEQRES 5 A 295 GLU GLN LYS ASN LEU LEU THR GLY ASP PHE SER CYS PRO SEQRES 6 A 295 PRO GLY TYR SER PRO VAL HIS LEU LEU SER GLN THR HIS SEQRES 7 A 295 GLU GLU GLY TYR SER ARG LEU GLU CYS LYS LYS LYS CYS SEQRES 8 A 295 THR LEU LYS ILE PHE CYS LYS THR VAL CYS GLU ASP VAL SEQRES 9 A 295 PHE ARG VAL ALA LYS ALA GLU PHE ARG ALA TYR TRP CYS SEQRES 10 A 295 VAL ALA ALA GLY GLN VAL PRO ASP ASN SER GLY LEU LEU SEQRES 11 A 295 PHE GLY GLY VAL PHE THR ASP LYS THR ILE ASN PRO MET SEQRES 12 A 295 THR ASN ALA GLN SER CYS PRO ALA GLY TYR ILE PRO LEU SEQRES 13 A 295 ASN LEU PHE GLU SER LEU LYS VAL CYS VAL SER LEU ASP SEQRES 14 A 295 TYR GLU LEU GLY PHE LYS PHE SER VAL PRO PHE GLY GLY SEQRES 15 A 295 PHE PHE SER CYS ILE MET GLY ASN PRO LEU VAL ASN SER SEQRES 16 A 295 ASP THR ALA LYS ASP VAL ARG ALA PRO SER LEU LYS LYS SEQRES 17 A 295 CYS PRO GLY GLY PHE SER GLN HIS LEU ALA VAL ILE SER SEQRES 18 A 295 ASP GLY CYS GLN VAL SER TYR CYS VAL LYS ALA GLY ILE SEQRES 19 A 295 PHE THR GLY GLY SER LEU LEU PRO VAL ARG LEU PRO PRO SEQRES 20 A 295 TYR THR LYS PRO PRO LEU MET SER GLN VAL ALA THR ASN SEQRES 21 A 295 THR VAL ILE VAL THR ASN SER GLU THR ALA ARG SER TRP SEQRES 22 A 295 ILE LYS ASP PRO GLN THR ASN GLN TRP LYS LEU GLY GLU SEQRES 23 A 295 GLY THR LYS HIS HIS HIS HIS HIS HIS SEQRES 1 B 295 GLU THR GLY GLY CYS THR ASN VAL ASP SER PRO ASN PHE SEQRES 2 B 295 ASN PHE GLN ALA ASN MET ASP ASP ASP SER CYS ASP ALA SEQRES 3 B 295 LYS VAL THR ASN PHE THR PHE GLY GLY VAL TYR GLN GLU SEQRES 4 B 295 CYS THR GLU LEU SER GLY ASP VAL LEU CYS GLN ASN LEU SEQRES 5 B 295 GLU GLN LYS ASN LEU LEU THR GLY ASP PHE SER CYS PRO SEQRES 6 B 295 PRO GLY TYR SER PRO VAL HIS LEU LEU SER GLN THR HIS SEQRES 7 B 295 GLU GLU GLY TYR SER ARG LEU GLU CYS LYS LYS LYS CYS SEQRES 8 B 295 THR LEU LYS ILE PHE CYS LYS THR VAL CYS GLU ASP VAL SEQRES 9 B 295 PHE ARG VAL ALA LYS ALA GLU PHE ARG ALA TYR TRP CYS SEQRES 10 B 295 VAL ALA ALA GLY GLN VAL PRO ASP ASN SER GLY LEU LEU SEQRES 11 B 295 PHE GLY GLY VAL PHE THR ASP LYS THR ILE ASN PRO MET SEQRES 12 B 295 THR ASN ALA GLN SER CYS PRO ALA GLY TYR ILE PRO LEU SEQRES 13 B 295 ASN LEU PHE GLU SER LEU LYS VAL CYS VAL SER LEU ASP SEQRES 14 B 295 TYR GLU LEU GLY PHE LYS PHE SER VAL PRO PHE GLY GLY SEQRES 15 B 295 PHE PHE SER CYS ILE MET GLY ASN PRO LEU VAL ASN SER SEQRES 16 B 295 ASP THR ALA LYS ASP VAL ARG ALA PRO SER LEU LYS LYS SEQRES 17 B 295 CYS PRO GLY GLY PHE SER GLN HIS LEU ALA VAL ILE SER SEQRES 18 B 295 ASP GLY CYS GLN VAL SER TYR CYS VAL LYS ALA GLY ILE SEQRES 19 B 295 PHE THR GLY GLY SER LEU LEU PRO VAL ARG LEU PRO PRO SEQRES 20 B 295 TYR THR LYS PRO PRO LEU MET SER GLN VAL ALA THR ASN SEQRES 21 B 295 THR VAL ILE VAL THR ASN SER GLU THR ALA ARG SER TRP SEQRES 22 B 295 ILE LYS ASP PRO GLN THR ASN GLN TRP LYS LEU GLY GLU SEQRES 23 B 295 GLY THR LYS HIS HIS HIS HIS HIS HIS HET GOL A 701 6 HET GOL A 702 6 HET CL A 703 1 HET GOL B 701 6 HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 5 CL CL 1- FORMUL 7 HOH *91(H2 O) HELIX 1 AA1 LEU A 393 GLU A 398 1 6 HELIX 2 AA2 ASP A 514 PHE A 519 1 6 HELIX 3 AA3 LYS A 520 SER A 522 5 3 HELIX 4 AA4 LEU B 393 GLU B 398 1 6 HELIX 5 AA5 ASP B 514 PHE B 519 1 6 HELIX 6 AA6 LYS B 520 SER B 522 5 3 SHEET 1 AA1 3 PHE A 378 SER A 389 0 SHEET 2 AA1 3 PHE A 441 ALA A 464 -1 O TYR A 460 N TYR A 382 SHEET 3 AA1 3 TYR A 413 THR A 437 -1 N VAL A 416 O TRP A 461 SHEET 1 AA2 3 LEU A 475 PHE A 480 0 SHEET 2 AA2 3 LEU A 507 SER A 512 -1 O CYS A 510 N GLY A 478 SHEET 3 AA2 3 ILE A 499 LEU A 503 -1 N ILE A 499 O VAL A 511 SHEET 1 AA3 3 PHE A 525 SER A 530 0 SHEET 2 AA3 3 CYS A 569 LYS A 576 -1 O SER A 572 N PHE A 529 SHEET 3 AA3 3 PHE A 558 SER A 566 -1 N SER A 559 O VAL A 575 SHEET 1 AA4 3 PHE B 378 SER B 389 0 SHEET 2 AA4 3 PHE B 441 ALA B 464 -1 O TYR B 460 N TYR B 382 SHEET 3 AA4 3 TYR B 413 THR B 437 -1 N VAL B 416 O TRP B 461 SHEET 1 AA5 3 LEU B 475 PHE B 480 0 SHEET 2 AA5 3 LEU B 507 SER B 512 -1 O CYS B 510 N GLY B 478 SHEET 3 AA5 3 ILE B 499 LEU B 503 -1 N ILE B 499 O VAL B 511 SHEET 1 AA6 3 PHE B 525 SER B 530 0 SHEET 2 AA6 3 CYS B 569 LYS B 576 -1 O CYS B 574 N GLY B 526 SHEET 3 AA6 3 PHE B 558 SER B 566 -1 N SER B 559 O VAL B 575 SSBOND 1 CYS A 385 CYS A 394 1555 1555 2.05 SSBOND 2 CYS A 409 CYS A 462 1555 1555 2.06 SSBOND 3 CYS A 432 CYS A 446 1555 1555 2.05 SSBOND 4 CYS A 436 CYS A 442 1555 1555 2.04 SSBOND 5 CYS A 494 CYS A 510 1555 1555 2.05 SSBOND 6 CYS A 531 CYS A 569 1555 1555 2.04 SSBOND 7 CYS A 554 CYS A 574 1555 1555 2.04 SSBOND 8 CYS B 385 CYS B 394 1555 1555 2.07 SSBOND 9 CYS B 409 CYS B 462 1555 1555 2.06 SSBOND 10 CYS B 432 CYS B 446 1555 1555 2.04 SSBOND 11 CYS B 436 CYS B 442 1555 1555 2.04 SSBOND 12 CYS B 494 CYS B 510 1555 1555 2.05 SSBOND 13 CYS B 531 CYS B 569 1555 1555 2.04 SSBOND 14 CYS B 554 CYS B 574 1555 1555 2.04 CISPEP 1 ASP A 470 ASN A 471 0 3.17 SITE 1 AC1 7 GLU A 384 CYS A 385 THR A 386 GLU A 398 SITE 2 AC1 7 PHE A 407 ARG A 458 HOH A 812 SITE 1 AC2 4 GLN A 399 LEU A 402 HOH A 813 HOH A 829 SITE 1 AC3 6 GLU B 384 CYS B 385 THR B 386 GLU B 398 SITE 2 AC3 6 ARG B 458 HOH B 824 CRYST1 70.530 31.270 103.650 90.00 91.42 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014178 0.000000 0.000351 0.00000 SCALE2 0.000000 0.031980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009651 0.00000