HEADER OXIDOREDUCTASE 22-JUL-19 6SBP TITLE PLANT CYSTEINE OXIDASE PCO5 FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLANT CYSTEINE OXIDASE 5; COMPND 3 CHAIN: A; COMPND 4 EC: 1.13.11.20; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PCO5, AT3G58670, T20N10.20; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DOUBLE STRANDED BETA HELIX FOLD, CYSTEINE DIOXYGENASE, IRON COFACTOR, KEYWDS 2 OXYGEN SENSING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.D.WHITE,E.FLASHMAN,M.A.MCDONOUGH REVDAT 3 15-MAY-24 6SBP 1 REMARK REVDAT 2 23-DEC-20 6SBP 1 JRNL REVDAT 1 01-JUL-20 6SBP 0 JRNL AUTH M.D.WHITE,L.DALLE CARBONARE,M.LAVILLA PUERTA,S.IACOPINO, JRNL AUTH 2 M.EDWARDS,K.DUNNE,E.PIRES,C.LEVY,M.A.MCDONOUGH,F.LICAUSI, JRNL AUTH 3 E.FLASHMAN JRNL TITL STRUCTURES OF ARABIDOPSIS THALIANA OXYGEN-SENSING PLANT JRNL TITL 2 CYSTEINE OXIDASES 4 AND 5 ENABLE TARGETED MANIPULATION OF JRNL TITL 3 THEIR ACTIVITY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 23140 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32868422 JRNL DOI 10.1073/PNAS.2000206117 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 43502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2151 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7270 - 4.7092 1.00 2800 153 0.1762 0.1762 REMARK 3 2 4.7092 - 3.7383 1.00 2811 129 0.1464 0.1228 REMARK 3 3 3.7383 - 3.2659 1.00 2798 150 0.1811 0.2215 REMARK 3 4 3.2659 - 2.9673 1.00 2807 149 0.2002 0.2248 REMARK 3 5 2.9673 - 2.7546 1.00 2812 127 0.2061 0.2323 REMARK 3 6 2.7546 - 2.5922 1.00 2813 148 0.2074 0.2068 REMARK 3 7 2.5922 - 2.4624 1.00 2791 132 0.2186 0.2395 REMARK 3 8 2.4624 - 2.3552 1.00 2817 137 0.2311 0.2345 REMARK 3 9 2.3552 - 2.2646 0.99 2757 150 0.2933 0.3200 REMARK 3 10 2.2646 - 2.1864 0.99 2798 137 0.3814 0.4739 REMARK 3 11 2.1864 - 2.1181 1.00 2785 151 0.2785 0.3087 REMARK 3 12 2.1181 - 2.0575 1.00 2781 177 0.2862 0.3156 REMARK 3 13 2.0575 - 2.0034 1.00 2798 144 0.3082 0.3616 REMARK 3 14 2.0034 - 1.9545 0.97 2734 144 0.4144 0.4102 REMARK 3 15 1.9545 - 1.9100 0.81 2249 123 0.6301 0.6060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -11 THROUGH 3 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.2366 -10.8558 -2.7541 REMARK 3 T TENSOR REMARK 3 T11: 0.9855 T22: 0.8795 REMARK 3 T33: 0.9747 T12: -0.0765 REMARK 3 T13: -0.0831 T23: 0.0152 REMARK 3 L TENSOR REMARK 3 L11: 7.5623 L22: 1.8847 REMARK 3 L33: 1.4502 L12: 3.6532 REMARK 3 L13: 2.2783 L23: 0.7994 REMARK 3 S TENSOR REMARK 3 S11: 0.6539 S12: -0.5414 S13: 0.5131 REMARK 3 S21: 0.3693 S22: -0.4976 S23: -0.3976 REMARK 3 S31: 0.7810 S32: 0.6433 S33: -0.1077 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3380 7.4864 4.8188 REMARK 3 T TENSOR REMARK 3 T11: 0.3617 T22: 0.3663 REMARK 3 T33: 0.3823 T12: -0.0572 REMARK 3 T13: -0.0961 T23: 0.0796 REMARK 3 L TENSOR REMARK 3 L11: 6.0625 L22: 3.7870 REMARK 3 L33: 3.1658 L12: -0.4204 REMARK 3 L13: 1.6949 L23: -0.4056 REMARK 3 S TENSOR REMARK 3 S11: 0.2862 S12: -0.2601 S13: -0.3143 REMARK 3 S21: -0.2073 S22: -0.0628 S23: 0.4825 REMARK 3 S31: 0.3180 S32: -0.5116 S33: -0.1629 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5170 17.7887 22.9973 REMARK 3 T TENSOR REMARK 3 T11: 0.6469 T22: 0.8136 REMARK 3 T33: 0.6161 T12: -0.0474 REMARK 3 T13: -0.0829 T23: -0.2254 REMARK 3 L TENSOR REMARK 3 L11: 5.1367 L22: 8.2878 REMARK 3 L33: 5.5414 L12: 0.6367 REMARK 3 L13: 0.4964 L23: -0.7737 REMARK 3 S TENSOR REMARK 3 S11: 0.0592 S12: -1.3683 S13: 1.0027 REMARK 3 S21: 1.4350 S22: -0.1227 S23: 0.2592 REMARK 3 S31: -0.6903 S32: -0.4064 S33: 0.0463 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8575 10.5936 8.9926 REMARK 3 T TENSOR REMARK 3 T11: 0.3557 T22: 0.3957 REMARK 3 T33: 0.3838 T12: -0.0105 REMARK 3 T13: -0.0647 T23: 0.0316 REMARK 3 L TENSOR REMARK 3 L11: 5.2985 L22: 2.6677 REMARK 3 L33: 4.4150 L12: 0.6362 REMARK 3 L13: 2.0620 L23: -0.9301 REMARK 3 S TENSOR REMARK 3 S11: 0.1963 S12: -0.4371 S13: 0.2477 REMARK 3 S21: 0.1025 S22: -0.0594 S23: 0.1279 REMARK 3 S31: -0.0102 S32: -0.3287 S33: -0.1175 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4033 17.9712 11.0513 REMARK 3 T TENSOR REMARK 3 T11: 0.4465 T22: 0.3761 REMARK 3 T33: 0.5164 T12: -0.0302 REMARK 3 T13: -0.0147 T23: -0.0752 REMARK 3 L TENSOR REMARK 3 L11: 4.2941 L22: 1.7095 REMARK 3 L33: 3.5468 L12: 0.6042 REMARK 3 L13: 2.4354 L23: 0.0663 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: 0.4891 S13: 0.4831 REMARK 3 S21: -0.0117 S22: 0.0294 S23: 0.1040 REMARK 3 S31: -0.1837 S32: 0.4652 S33: -0.1254 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103385. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-16; 11-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : DIAMOND; DIAMOND REMARK 200 BEAMLINE : I03; I02 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763; 1.0721 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F; DECTRIS REMARK 200 PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44135 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 48.743 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.91 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 1.37800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M AMMONIUM NITRATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.96500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.45500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.98250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.45500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.94750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.45500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.45500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.98250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.45500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.45500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 92.94750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.96500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O3 GOL A 301 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 497 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 PRO A 55 REMARK 465 GLY A 56 REMARK 465 PRO A 57 REMARK 465 GLY A 58 REMARK 465 ASN A 59 REMARK 465 GLU A 60 REMARK 465 ARG A 61 REMARK 465 ASN A 62 REMARK 465 GLY A 63 REMARK 465 ASN A 64 REMARK 465 HIS A 65 REMARK 465 HIS A 66 REMARK 465 SER A 67 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -11 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A -10 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 7 CZ NH1 NH2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 GLN A 46 CG CD OE1 NE2 REMARK 470 ARG A 52 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 53 CG OD1 ND2 REMARK 470 LYS A 72 NZ REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 ASP A 130 CG OD1 OD2 REMARK 470 GLN A 134 CG CD OE1 NE2 REMARK 470 LYS A 195 CD CE NZ REMARK 470 MET A 198 CE REMARK 470 MET A 208 CG SD CE REMARK 470 ASN A 209 CG OD1 ND2 REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 GLN A 223 CG CD OE1 NE2 REMARK 470 VAL A 229 CG1 CG2 REMARK 470 ARG A 241 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C3 GOL A 301 O3 GOL A 301 7555 1.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 143 81.18 -158.18 REMARK 500 SER A 183 101.33 -161.69 REMARK 500 ARG A 188 79.08 -117.68 REMARK 500 ASP A 200 34.71 -94.59 REMARK 500 ASN A 209 -40.44 128.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 302 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 98 NE2 REMARK 620 2 HIS A 100 NE2 98.2 REMARK 620 3 HIS A 164 NE2 90.3 89.4 REMARK 620 4 HOH A 448 O 84.7 90.6 175.0 REMARK 620 5 HOH A 455 O 85.3 172.0 97.7 82.5 REMARK 620 6 HOH A 468 O 169.7 88.8 97.3 87.8 86.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 302 DBREF 6SBP A 1 242 UNP Q9LXT4 PCO5_ARATH 1 242 SEQADV 6SBP MET A -19 UNP Q9LXT4 INITIATING METHIONINE SEQADV 6SBP GLY A -18 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP SER A -17 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP SER A -16 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP HIS A -15 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP HIS A -14 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP HIS A -13 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP HIS A -12 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP HIS A -11 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP HIS A -10 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP SER A -9 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP SER A -8 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP GLY A -7 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP LEU A -6 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP VAL A -5 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP PRO A -4 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP ARG A -3 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP GLY A -2 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP SER A -1 UNP Q9LXT4 EXPRESSION TAG SEQADV 6SBP HIS A 0 UNP Q9LXT4 EXPRESSION TAG SEQRES 1 A 262 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 262 LEU VAL PRO ARG GLY SER HIS MET PRO TYR PHE ILE GLN SEQRES 3 A 262 ARG LEU PHE ASN THR CYS LYS SER SER LEU SER PRO ASN SEQRES 4 A 262 GLY PRO VAL SER GLU GLU ALA LEU ASP LYS VAL ARG ASN SEQRES 5 A 262 VAL LEU GLU LYS ILE LYS PRO SER ASP VAL GLY LEU GLU SEQRES 6 A 262 GLN GLU ALA GLN LEU VAL ARG ASN TRP PRO GLY PRO GLY SEQRES 7 A 262 ASN GLU ARG ASN GLY ASN HIS HIS SER LEU PRO ALA ILE SEQRES 8 A 262 LYS TYR LEU GLN LEU HIS GLU CYS ASP SER PHE SER ILE SEQRES 9 A 262 GLY ILE PHE CYS MET PRO PRO GLY SER ILE ILE PRO LEU SEQRES 10 A 262 HIS ASN HIS PRO GLY MET THR VAL LEU SER LYS LEU VAL SEQRES 11 A 262 TYR GLY SER MET HIS VAL LYS SER TYR ASP TRP ALA GLU SEQRES 12 A 262 PRO ASP GLN SER GLU LEU ASP ASP PRO LEU GLN ALA ARG SEQRES 13 A 262 PRO ALA LYS LEU VAL LYS ASP ILE ASP MET THR SER PRO SEQRES 14 A 262 SER PRO ALA THR THR LEU TYR PRO THR THR GLY GLY ASN SEQRES 15 A 262 ILE HIS CYS PHE LYS ALA ILE THR HIS CYS ALA ILE PHE SEQRES 16 A 262 ASP ILE LEU SER PRO PRO TYR SER SER THR HIS GLY ARG SEQRES 17 A 262 HIS CYS ASN TYR PHE ARG LYS SER PRO MET LEU ASP LEU SEQRES 18 A 262 PRO GLY GLU ILE GLU VAL MET ASN GLY GLU VAL ILE SER SEQRES 19 A 262 ASN VAL THR TRP LEU GLU GLU TYR GLN PRO PRO ASP ASN SEQRES 20 A 262 PHE VAL ILE TRP ARG VAL PRO TYR ARG GLY PRO VAL ILE SEQRES 21 A 262 ARG LYS HET GOL A 301 6 HET NI A 302 1 HETNAM GOL GLYCEROL HETNAM NI NICKEL (II) ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 NI NI 2+ FORMUL 4 HOH *100(H2 O) HELIX 1 AA1 TYR A 3 SER A 15 1 13 HELIX 2 AA2 SER A 23 GLU A 35 1 13 HELIX 3 AA3 LYS A 36 ILE A 37 5 2 HELIX 4 AA4 LYS A 38 GLY A 43 5 6 HELIX 5 AA5 LEU A 44 GLN A 49 1 6 HELIX 6 AA6 GLU A 123 SER A 127 5 5 SHEET 1 AA1 2 LEU A 16 SER A 17 0 SHEET 2 AA1 2 GLY A 20 PRO A 21 -1 O GLY A 20 N SER A 17 SHEET 1 AA2 6 THR A 153 LEU A 155 0 SHEET 2 AA2 6 THR A 104 TYR A 111 -1 N SER A 107 O THR A 153 SHEET 3 AA2 6 CYS A 172 SER A 179 -1 O PHE A 175 N LYS A 108 SHEET 4 AA2 6 SER A 83 MET A 89 -1 N GLY A 85 O ASP A 176 SHEET 5 AA2 6 ILE A 71 GLU A 78 -1 N LYS A 72 O CYS A 88 SHEET 6 AA2 6 ILE A 230 VAL A 233 1 O TRP A 231 N ILE A 71 SHEET 1 AA3 7 ILE A 94 HIS A 98 0 SHEET 2 AA3 7 ILE A 163 ALA A 168 -1 O HIS A 164 N HIS A 98 SHEET 3 AA3 7 SER A 113 TRP A 121 -1 N TYR A 119 O ILE A 163 SHEET 4 AA3 7 ARG A 136 THR A 147 -1 O MET A 146 N MET A 114 SHEET 5 AA3 7 VAL A 216 TYR A 222 -1 O THR A 217 N ALA A 138 SHEET 6 AA3 7 TYR A 192 LYS A 195 -1 N ARG A 194 O GLU A 220 SHEET 7 AA3 7 ILE A 94 HIS A 98 -1 N LEU A 97 O PHE A 193 SHEET 1 AA4 2 ILE A 205 GLU A 206 0 SHEET 2 AA4 2 VAL A 212 ILE A 213 -1 O ILE A 213 N ILE A 205 LINK NE2 HIS A 98 NI NI A 302 1555 1555 2.05 LINK NE2 HIS A 100 NI NI A 302 1555 1555 2.14 LINK NE2 HIS A 164 NI NI A 302 1555 1555 2.14 LINK NI NI A 302 O HOH A 448 1555 1555 2.08 LINK NI NI A 302 O HOH A 455 1555 1555 2.10 LINK NI NI A 302 O HOH A 468 1555 1555 2.05 CISPEP 1 SER A 148 PRO A 149 0 -3.60 CISPEP 2 SER A 179 PRO A 180 0 -5.95 SITE 1 AC1 5 HIS A 115 ASP A 143 ASP A 145 ILE A 169 SITE 2 AC1 5 HOH A 458 SITE 1 AC2 6 HIS A 98 HIS A 100 HIS A 164 HOH A 448 SITE 2 AC2 6 HOH A 455 HOH A 468 CRYST1 68.910 68.910 123.930 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014512 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008069 0.00000