HEADER DNA BINDING PROTEIN 22-JUL-19 6SBX TITLE CDBA FORM TWO COMPND MOL_ID: 1; COMPND 2 MOLECULE: CDBA; COMPND 3 CHAIN: A, C, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS; SOURCE 3 ORGANISM_TAXID: 34; SOURCE 4 GENE: MXAN_4361; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOID RIBBON-HELIX-HELIX, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.L.LOVERING,I.T.CADBY REVDAT 1 22-APR-20 6SBX 0 JRNL AUTH D.SKOTNICKA,W.STEINCHEN,D.SZADKOWSKI,I.T.CADBY,A.L.LOVERING, JRNL AUTH 2 G.BANGE,L.SOGAARD-ANDERSEN JRNL TITL CDBA IS A DNA-BINDING PROTEIN AND C-DI-GMP RECEPTOR JRNL TITL 2 IMPORTANT FOR NUCLEOID ORGANIZATION AND SEGREGATION IN JRNL TITL 3 MYXOCOCCUS XANTHUS. JRNL REF NAT COMMUN V. 11 1791 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32286293 JRNL DOI 10.1038/S41467-020-15628-8 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 9739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.900 REMARK 3 FREE R VALUE TEST SET COUNT : 954 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 678 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1325 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 99.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.51000 REMARK 3 B22 (A**2) : -2.51000 REMARK 3 B33 (A**2) : 5.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.284 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.217 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.226 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.909 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1349 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1279 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1810 ; 1.552 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2969 ; 1.218 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 154 ; 7.037 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;36.934 ;21.477 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 269 ;17.928 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.839 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 170 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1472 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 301 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 5 57 C 5 57 1492 0.160 0.050 REMARK 3 2 A 5 51 B 5 51 1357 0.140 0.050 REMARK 3 3 C 5 51 B 5 51 1376 0.140 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 58 REMARK 3 ORIGIN FOR THE GROUP (A): 4.3810 -22.3610 -9.4880 REMARK 3 T TENSOR REMARK 3 T11: 0.3437 T22: 0.4354 REMARK 3 T33: 0.4838 T12: -0.1279 REMARK 3 T13: -0.0805 T23: -0.2331 REMARK 3 L TENSOR REMARK 3 L11: 3.6418 L22: 5.9294 REMARK 3 L33: 7.9935 L12: 1.6693 REMARK 3 L13: 2.0154 L23: 1.8281 REMARK 3 S TENSOR REMARK 3 S11: 0.1860 S12: -0.4268 S13: 0.3457 REMARK 3 S21: 0.7482 S22: -0.1551 S23: -0.6310 REMARK 3 S31: -0.6943 S32: 0.8457 S33: -0.0309 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 4 C 58 REMARK 3 ORIGIN FOR THE GROUP (A): -19.5250 -20.2720 -26.6370 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1668 REMARK 3 T33: 0.4269 T12: -0.0370 REMARK 3 T13: 0.2005 T23: -0.1042 REMARK 3 L TENSOR REMARK 3 L11: 6.1014 L22: 5.1708 REMARK 3 L33: 4.9669 L12: -1.8342 REMARK 3 L13: 4.6082 L23: -2.5262 REMARK 3 S TENSOR REMARK 3 S11: 0.2118 S12: 0.2087 S13: 0.4100 REMARK 3 S21: -0.0157 S22: 0.0698 S23: -0.3832 REMARK 3 S31: -0.1623 S32: 0.2076 S33: -0.2816 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 52 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1930 -22.7300 -11.3300 REMARK 3 T TENSOR REMARK 3 T11: 0.3145 T22: 0.3312 REMARK 3 T33: 0.3985 T12: -0.1219 REMARK 3 T13: -0.0543 T23: -0.2929 REMARK 3 L TENSOR REMARK 3 L11: 6.6748 L22: 4.2618 REMARK 3 L33: 6.8278 L12: 0.0816 REMARK 3 L13: 1.7301 L23: -1.5320 REMARK 3 S TENSOR REMARK 3 S11: 0.3295 S12: -0.2207 S13: 0.3517 REMARK 3 S21: 0.6682 S22: -0.1424 S23: -0.5382 REMARK 3 S31: -0.5275 S32: 0.5117 S33: -0.1871 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.20 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6SBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103443. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10699 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 49.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 23.60 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 19.20 REMARK 200 R MERGE FOR SHELL (I) : 1.62500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NA MALONATE PH 7 0.1M HEPES 30% REMARK 280 POLYACRYLATE 2100, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 67.34500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 67.34500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.56500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 67.34500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.28250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 67.34500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.84750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 67.34500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 39.84750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 67.34500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 13.28250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 67.34500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 67.34500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.56500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 67.34500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 67.34500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 26.56500 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 67.34500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 39.84750 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 67.34500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 13.28250 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.34500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 13.28250 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 67.34500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 39.84750 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 67.34500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 67.34500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 26.56500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -53.13000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 THR A 4 REMARK 465 ASP A 59 REMARK 465 GLU A 60 REMARK 465 ARG A 61 REMARK 465 GLN A 62 REMARK 465 ASP A 63 REMARK 465 PRO A 64 REMARK 465 ARG A 65 REMARK 465 GLU A 66 REMARK 465 GLU A 67 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 GLY C 3 REMARK 465 ASP C 59 REMARK 465 GLU C 60 REMARK 465 ARG C 61 REMARK 465 GLN C 62 REMARK 465 ASP C 63 REMARK 465 PRO C 64 REMARK 465 ARG C 65 REMARK 465 GLU C 66 REMARK 465 GLU C 67 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLY B 3 REMARK 465 THR B 4 REMARK 465 VAL B 53 REMARK 465 ASN B 54 REMARK 465 ASP B 55 REMARK 465 VAL B 56 REMARK 465 THR B 57 REMARK 465 GLY B 58 REMARK 465 ASP B 59 REMARK 465 GLU B 60 REMARK 465 ARG B 61 REMARK 465 GLN B 62 REMARK 465 ASP B 63 REMARK 465 PRO B 64 REMARK 465 ARG B 65 REMARK 465 GLU B 66 REMARK 465 GLU B 67 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU C 45 OG SER C 49 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 30 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 PHE B 50 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 52 103.97 -57.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6SBW RELATED DB: PDB REMARK 900 FORM ONE DBREF 6SBX A 1 67 UNP Q1D489 Q1D489_MYXXD 52 118 DBREF 6SBX C 1 67 UNP Q1D489 Q1D489_MYXXD 52 118 DBREF 6SBX B 1 67 UNP Q1D489 Q1D489_MYXXD 52 118 SEQRES 1 A 67 MET ALA GLY THR ASP LYS ARG LYS GLN SER LEU TYR PHE SEQRES 2 A 67 PRO GLU GLU MET LEU LYS GLU ILE GLN GLU GLU ALA THR SEQRES 3 A 67 ARG GLN ASP ARG SER LEU SER TRP VAL VAL GLN GLN ALA SEQRES 4 A 67 TRP LYS ILE ALA ARG GLU ARG ILE LYS SER PHE PRO ALA SEQRES 5 A 67 VAL ASN ASP VAL THR GLY ASP GLU ARG GLN ASP PRO ARG SEQRES 6 A 67 GLU GLU SEQRES 1 C 67 MET ALA GLY THR ASP LYS ARG LYS GLN SER LEU TYR PHE SEQRES 2 C 67 PRO GLU GLU MET LEU LYS GLU ILE GLN GLU GLU ALA THR SEQRES 3 C 67 ARG GLN ASP ARG SER LEU SER TRP VAL VAL GLN GLN ALA SEQRES 4 C 67 TRP LYS ILE ALA ARG GLU ARG ILE LYS SER PHE PRO ALA SEQRES 5 C 67 VAL ASN ASP VAL THR GLY ASP GLU ARG GLN ASP PRO ARG SEQRES 6 C 67 GLU GLU SEQRES 1 B 67 MET ALA GLY THR ASP LYS ARG LYS GLN SER LEU TYR PHE SEQRES 2 B 67 PRO GLU GLU MET LEU LYS GLU ILE GLN GLU GLU ALA THR SEQRES 3 B 67 ARG GLN ASP ARG SER LEU SER TRP VAL VAL GLN GLN ALA SEQRES 4 B 67 TRP LYS ILE ALA ARG GLU ARG ILE LYS SER PHE PRO ALA SEQRES 5 B 67 VAL ASN ASP VAL THR GLY ASP GLU ARG GLN ASP PRO ARG SEQRES 6 B 67 GLU GLU HELIX 1 AA1 GLU A 15 GLN A 28 1 14 HELIX 2 AA2 SER A 31 PHE A 50 1 20 HELIX 3 AA3 PRO C 14 GLN C 28 1 15 HELIX 4 AA4 SER C 31 PHE C 50 1 20 HELIX 5 AA5 GLU B 15 GLN B 28 1 14 HELIX 6 AA6 SER B 31 PHE B 50 1 20 SHEET 1 AA1 2 LYS A 6 PRO A 14 0 SHEET 2 AA1 2 LYS B 6 PRO B 14 -1 O PHE B 13 N ARG A 7 CRYST1 134.690 134.690 53.130 90.00 90.00 90.00 I 41 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007424 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007424 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018822 0.00000