HEADER ONCOPROTEIN 24-JUL-19 6SCM TITLE SOS1 IN COMPLEX WITH INHIBITOR BI-3406 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SON OF SEVENLESS HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SOS-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ONCOLOGY, EXCHANGE FACTOR, PROTEIN-LIGAND COMPLEX, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.KESSLER,G.FISCHER,J.RAMHARTER REVDAT 3 02-JUN-21 6SCM 1 JRNL REVDAT 2 10-MAR-21 6SCM 1 JRNL REVDAT 1 26-AUG-20 6SCM 0 JRNL AUTH M.H.HOFMANN,M.GMACHL,J.RAMHARTER,F.SAVARESE,D.GERLACH, JRNL AUTH 2 J.R.MARSZALEK,M.P.SANDERSON,D.KESSLER,F.TRAPANI,H.ARNHOF, JRNL AUTH 3 K.RUMPEL,D.A.BOTESTEANU,P.ETTMAYER,T.GERSTBERGER,C.KOFINK, JRNL AUTH 4 T.WUNBERG,A.ZOEPHEL,S.C.FU,J.L.TEH,J.BOTTCHER,N.POTOTSCHNIG, JRNL AUTH 5 F.SCHACHINGER,K.SCHIPANY,S.LIEB,C.P.VELLANO,J.C.O'CONNELL, JRNL AUTH 6 R.L.MENDES,J.MOLL,M.PETRONCZKI,T.P.HEFFERNAN,M.PEARSON, JRNL AUTH 7 D.B.MCCONNELL,N.KRAUT JRNL TITL BI-3406, A POTENT AND SELECTIVE SOS1-KRAS INTERACTION JRNL TITL 2 INHIBITOR, IS EFFECTIVE IN KRAS-DRIVEN CANCERS THROUGH JRNL TITL 3 COMBINED MEK INHIBITION. JRNL REF CANCER DISCOV V. 11 142 2021 JRNL REFN ESSN 2159-8290 JRNL PMID 32816843 JRNL DOI 10.1158/2159-8290.CD-20-0142 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 77.4 REMARK 3 NUMBER OF REFLECTIONS : 34893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1717 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 11.06 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2372 REMARK 3 BIN FREE R VALUE : 0.2177 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 42 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3875 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.66110 REMARK 3 B22 (A**2) : 0.99880 REMARK 3 B33 (A**2) : 0.66240 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.270 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.217 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.160 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.650 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.156 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : NULL ; NULL ; NULL REMARK 3 BOND ANGLES : NULL ; NULL ; NULL REMARK 3 TORSION ANGLES : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : NULL ; NULL ; NULL REMARK 3 ISOTROPIC THERMAL FACTORS : NULL ; NULL ; NULL REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : NULL ; NULL ; NULL REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : NULL ; NULL ; NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : NULL REMARK 3 OTHER TORSION ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 8.7326 -15.3206 -22.1583 REMARK 3 T TENSOR REMARK 3 T11: 0 T22: 0 REMARK 3 T33: 0 T12: 0 REMARK 3 T13: 0 T23: 0 REMARK 3 L TENSOR REMARK 3 L11: 0 L22: 0 REMARK 3 L33: 0 L12: 0 REMARK 3 L13: 0 L23: 0 REMARK 3 S TENSOR REMARK 3 S11: 0 S12: 0 S13: 0 REMARK 3 S21: 0 S22: 0 S23: 0 REMARK 3 S31: 0 S32: 0 S33: 0 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103388. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34879 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.866 REMARK 200 RESOLUTION RANGE LOW (A) : 84.462 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.6 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG8000, 0.1M IMIDAZOLE PH=8.0, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.00350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.46200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.46200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.00350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 563 REMARK 465 GLN A 593 REMARK 465 PRO A 594 REMARK 465 LYS A 595 REMARK 465 ALA A 596 REMARK 465 GLY A 597 REMARK 465 ARG A 744 REMARK 465 ASP A 745 REMARK 465 ASN A 746 REMARK 465 GLY A 747 REMARK 465 PRO A 748 REMARK 465 GLY A 749 REMARK 465 ASN A 1044 REMARK 465 PRO A 1045 REMARK 465 ARG A 1046 REMARK 465 PRO A 1047 REMARK 465 GLY A 1048 REMARK 465 THR A 1049 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 564 CG CD OE1 OE2 REMARK 470 HIS A 750 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 751 CG OD1 ND2 REMARK 470 ILE A 752 CG1 CG2 CD1 REMARK 470 THR A 753 OG1 CG2 REMARK 470 GLN A 972 CG CD OE1 NE2 REMARK 470 ASN A1020 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE1 TRP A 809 O ARG A 1026 3654 1.53 REMARK 500 OE1 GLU A 954 HH22 ARG A 1019 3654 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS A 750 N - CA - CB ANGL. DEV. = 11.4 DEGREES REMARK 500 ILE A 752 N - CA - CB ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 565 -79.73 -17.91 REMARK 500 HIS A 764 -103.28 -133.35 REMARK 500 ASN A1020 -64.22 -16.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 CYS A 980 -11.32 REMARK 500 CYS A 980 -12.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L7H A 1108 DBREF 6SCM A 564 1049 UNP Q07889 SOS1_HUMAN 564 1049 SEQADV 6SCM GLY A 563 UNP Q07889 EXPRESSION TAG SEQRES 1 A 487 GLY GLU GLU GLN MET ARG LEU PRO SER ALA ASP VAL TYR SEQRES 2 A 487 ARG PHE ALA GLU PRO ASP SER GLU GLU ASN ILE ILE PHE SEQRES 3 A 487 GLU GLU ASN MET GLN PRO LYS ALA GLY ILE PRO ILE ILE SEQRES 4 A 487 LYS ALA GLY THR VAL ILE LYS LEU ILE GLU ARG LEU THR SEQRES 5 A 487 TYR HIS MET TYR ALA ASP PRO ASN PHE VAL ARG THR PHE SEQRES 6 A 487 LEU THR THR TYR ARG SER PHE CYS LYS PRO GLN GLU LEU SEQRES 7 A 487 LEU SER LEU ILE ILE GLU ARG PHE GLU ILE PRO GLU PRO SEQRES 8 A 487 GLU PRO THR GLU ALA ASP ARG ILE ALA ILE GLU ASN GLY SEQRES 9 A 487 ASP GLN PRO LEU SER ALA GLU LEU LYS ARG PHE ARG LYS SEQRES 10 A 487 GLU TYR ILE GLN PRO VAL GLN LEU ARG VAL LEU ASN VAL SEQRES 11 A 487 CYS ARG HIS TRP VAL GLU HIS HIS PHE TYR ASP PHE GLU SEQRES 12 A 487 ARG ASP ALA TYR LEU LEU GLN ARG MET GLU GLU PHE ILE SEQRES 13 A 487 GLY THR VAL ARG GLY LYS ALA MET LYS LYS TRP VAL GLU SEQRES 14 A 487 SER ILE THR LYS ILE ILE GLN ARG LYS LYS ILE ALA ARG SEQRES 15 A 487 ASP ASN GLY PRO GLY HIS ASN ILE THR PHE GLN SER SER SEQRES 16 A 487 PRO PRO THR VAL GLU TRP HIS ILE SER ARG PRO GLY HIS SEQRES 17 A 487 ILE GLU THR PHE ASP LEU LEU THR LEU HIS PRO ILE GLU SEQRES 18 A 487 ILE ALA ARG GLN LEU THR LEU LEU GLU SER ASP LEU TYR SEQRES 19 A 487 ARG ALA VAL GLN PRO SER GLU LEU VAL GLY SER VAL TRP SEQRES 20 A 487 THR LYS GLU ASP LYS GLU ILE ASN SER PRO ASN LEU LEU SEQRES 21 A 487 LYS MET ILE ARG HIS THR THR ASN LEU THR LEU TRP PHE SEQRES 22 A 487 GLU LYS CYS ILE VAL GLU THR GLU ASN LEU GLU GLU ARG SEQRES 23 A 487 VAL ALA VAL VAL SER ARG ILE ILE GLU ILE LEU GLN VAL SEQRES 24 A 487 PHE GLN GLU LEU ASN ASN PHE ASN GLY VAL LEU GLU VAL SEQRES 25 A 487 VAL SER ALA MET ASN SER SER PRO VAL TYR ARG LEU ASP SEQRES 26 A 487 HIS THR PHE GLU GLN ILE PRO SER ARG GLN LYS LYS ILE SEQRES 27 A 487 LEU GLU GLU ALA HIS GLU LEU SER GLU ASP HIS TYR LYS SEQRES 28 A 487 LYS TYR LEU ALA LYS LEU ARG SER ILE ASN PRO PRO CYS SEQRES 29 A 487 VAL PRO PHE PHE GLY ILE TYR LEU THR ASN ILE LEU LYS SEQRES 30 A 487 THR GLU GLU GLY ASN PRO GLU VAL LEU LYS ARG HIS GLY SEQRES 31 A 487 LYS GLU LEU ILE ASN PHE SER LYS ARG ARG LYS VAL ALA SEQRES 32 A 487 GLU ILE THR GLY GLU ILE GLN GLN TYR GLN ASN GLN PRO SEQRES 33 A 487 TYR CYS LEU ARG VAL GLU SER ASP ILE LYS ARG PHE PHE SEQRES 34 A 487 GLU ASN LEU ASN PRO MET GLY ASN SER MET GLU LYS GLU SEQRES 35 A 487 PHE THR ASP TYR LEU PHE ASN LYS SER LEU GLU ILE GLU SEQRES 36 A 487 PRO ARG ASN PRO LYS PRO LEU PRO ARG PHE PRO LYS LYS SEQRES 37 A 487 TYR SER TYR PRO LEU LYS SER PRO GLY VAL ARG PRO SER SEQRES 38 A 487 ASN PRO ARG PRO GLY THR HET IMD A1101 5 HET IMD A1102 5 HET EDO A1103 4 HET EDO A1104 4 HET EDO A1105 4 HET EDO A1106 4 HET EDO A1107 4 HET L7H A1108 58 HETNAM IMD IMIDAZOLE HETNAM EDO 1,2-ETHANEDIOL HETNAM L7H ~{N}-[(1~{R})-1-[3-AZANYL-5-(TRIFLUOROMETHYL) HETNAM 2 L7H PHENYL]ETHYL]-7-METHOXY-2-METHYL-6-[(3~{S})-OXOLAN-3- HETNAM 3 L7H YL]OXY-QUINAZOLIN-4-AMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 IMD 2(C3 H5 N2 1+) FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 L7H C23 H25 F3 N4 O3 FORMUL 10 HOH *380(H2 O) HELIX 1 AA1 TYR A 575 GLU A 579 5 5 HELIX 2 AA2 THR A 605 THR A 614 1 10 HELIX 3 AA3 ASP A 620 TYR A 631 1 12 HELIX 4 AA4 ARG A 632 PHE A 634 5 3 HELIX 5 AA5 LYS A 636 GLU A 649 1 14 HELIX 6 AA6 THR A 656 ASN A 665 1 10 HELIX 7 AA7 SER A 671 TYR A 681 1 11 HELIX 8 AA8 TYR A 681 HIS A 700 1 20 HELIX 9 AA9 PHE A 701 ASP A 707 1 7 HELIX 10 AB1 ASP A 707 THR A 720 1 14 HELIX 11 AB2 GLY A 723 ALA A 743 1 21 HELIX 12 AB3 HIS A 770 PHE A 774 5 5 HELIX 13 AB4 HIS A 780 ALA A 798 1 19 HELIX 14 AB5 GLN A 800 VAL A 805 5 6 HELIX 15 AB6 SER A 818 GLU A 841 1 24 HELIX 16 AB7 ASN A 844 LEU A 865 1 22 HELIX 17 AB8 ASN A 867 ASN A 879 1 13 HELIX 18 AB9 SER A 880 ARG A 885 1 6 HELIX 19 AC1 LEU A 886 GLN A 892 1 7 HELIX 20 AC2 PRO A 894 LEU A 907 1 14 HELIX 21 AC3 SER A 908 ARG A 920 1 13 HELIX 22 AC4 PHE A 930 GLU A 942 1 13 HELIX 23 AC5 PHE A 958 GLN A 973 1 16 HELIX 24 AC6 GLU A 984 ASN A 993 1 10 HELIX 25 AC7 MET A 1001 GLU A 1017 1 17 SHEET 1 AA1 4 ILE A 586 PHE A 588 0 SHEET 2 AA1 4 ILE A 601 GLY A 604 -1 O ALA A 603 N ILE A 587 SHEET 3 AA1 4 LYS A 953 ASN A 957 -1 O ILE A 956 N GLY A 604 SHEET 4 AA1 4 VAL A 947 ARG A 950 -1 N LEU A 948 O LEU A 955 CISPEP 1 PRO A 924 PRO A 925 0 -7.89 SITE 1 AC1 5 TYR A 884 ASP A 887 PHE A 890 IMD A1102 SITE 2 AC1 5 L7H A1108 SITE 1 AC2 4 TYR A 884 GLU A 902 IMD A1101 L7H A1108 SITE 1 AC3 4 PHE A 648 GLU A 649 THR A 720 HOH A1301 SITE 1 AC4 7 GLY A 943 ASN A 944 TYR A1008 ASN A1011 SITE 2 AC4 7 LYS A1012 GLU A1015 HOH A1273 SITE 1 AC5 7 SER A 633 VAL A 805 GLY A 806 GLU A 941 SITE 2 AC5 7 GLU A 946 ARG A 961 LYS A1022 SITE 1 AC6 6 ARG A 625 GLU A 664 ASN A 691 ARG A 694 SITE 2 AC6 6 HIS A 695 HOH A1320 SITE 1 AC7 3 SER A 876 ASN A 879 TYR A 912 SITE 1 AC8 11 GLU A 590 ASN A 591 MET A 878 ASN A 879 SITE 2 AC8 11 TYR A 884 PHE A 890 LYS A 898 GLU A 902 SITE 3 AC8 11 HIS A 905 IMD A1101 IMD A1102 CRYST1 38.007 78.740 168.924 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026311 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005920 0.00000