HEADER VIRUS LIKE PARTICLE 25-JUL-19 6SCO TITLE CRYO-EM STRUCTURE OF POTATO LEAF ROLL VIRUS VLP COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAT PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POTATO LEAFROLL VIRUS; SOURCE 3 ORGANISM_COMMON: PLRV; SOURCE 4 ORGANISM_TAXID: 12045; SOURCE 5 EXPRESSION_SYSTEM: NICOTIANA BENTHAMIANA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4100 KEYWDS LUTEOVIRUS, POLEROVIRUS, VLP, CAPSID., VIRUS LIKE PARTICLE EXPDTA ELECTRON MICROSCOPY AUTHOR M.J.BYRNE,N.A.RANSON REVDAT 3 11-DEC-19 6SCO 1 JRNL REVDAT 2 30-OCT-19 6SCO 1 JRNL REMARK REVDAT 1 02-OCT-19 6SCO 0 JRNL AUTH M.J.BYRNE,J.F.C.STEELE,E.L.HESKETH,M.WALDEN,R.F.THOMPSON, JRNL AUTH 2 G.P.LOMONOSSOFF,N.A.RANSON JRNL TITL COMBINING TRANSIENT EXPRESSION AND CRYO-EM TO OBTAIN JRNL TITL 2 HIGH-RESOLUTION STRUCTURES OF LUTEOVIRID PARTICLES. JRNL REF STRUCTURE V. 27 1761 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 31611039 JRNL DOI 10.1016/J.STR.2019.09.010 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, GCTF, UCSF CHIMERA, COOT, REMARK 3 PHENIX, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : BACKBONE TRACE REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.300 REMARK 3 NUMBER OF PARTICLES : 74157 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6SCO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103490. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : POTATO LEAFROLL VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 71.65 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 180-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 409.02998 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 408.77699 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 408.62063 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -0.00010 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 408.73380 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 408.73370 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 204.41012 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 535.15264 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 77.76488 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 204.29689 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 535.22262 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 330.55931 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 535.22252 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 330.78571 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 204.07059 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 330.78561 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 204.29699 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 534.99622 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 535.26571 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 330.67264 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 204.36693 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 204.36677 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 535.26581 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 78.06116 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 330.67254 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 204.36687 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 -126.53201 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 408.73370 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 408.96010 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 -0.22640 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 535.15254 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 77.99128 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 204.18382 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 408.77689 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 408.84703 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 408.80368 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 535.22252 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 78.17449 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 204.43681 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 330.78561 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 204.66321 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 -126.48882 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 204.29689 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 -126.26242 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 77.94809 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 408.77689 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 0.11317 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 -0.29628 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 408.73370 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 0.00010 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 408.73380 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 535.15254 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 330.96892 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 204.32358 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 408.96010 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 0.22640 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 408.73370 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 204.54988 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 -126.19244 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 77.76488 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 -0.06998 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 0.18321 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 408.62063 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 204.36677 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 -126.30561 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 330.44624 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 330.67254 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 204.59333 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 535.03941 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 535.26571 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 78.28756 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 204.14047 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 330.96882 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 204.54998 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 534.92624 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 0.11307 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 -0.06988 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 408.55059 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 408.96020 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 408.50740 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 77.99118 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 204.41022 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 534.92624 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 408.84693 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 409.03008 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 408.55059 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 408.96000 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 408.50740 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 -0.06998 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 408.77699 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 -0.11323 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 408.96010 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 408.73380 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 -0.22630 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 204.54988 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 535.15264 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 330.74252 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 204.66311 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 535.22262 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 77.94809 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 -126.26252 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 330.78571 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 204.43681 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 78.17439 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 204.29699 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 -126.48882 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 -126.30571 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 330.67264 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 204.14047 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 204.59323 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 535.26581 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 330.44624 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 78.28746 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 204.36687 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 535.03941 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.22630 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 408.96010 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 408.73380 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 -126.19254 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 77.99128 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 204.32358 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.18311 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 408.84703 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 -0.29628 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 -126.26252 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 78.17449 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 204.07059 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 78.17439 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 204.66321 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 534.99622 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 204.66311 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 -126.26242 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 330.55931 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 0.18311 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 0.11317 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 408.80368 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.22630 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00010 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 -0.22640 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 -126.19254 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 330.96892 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 204.18382 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 -0.00010 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 0.22640 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 -0.22630 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 204.41012 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 -126.19244 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 330.74252 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 409.02998 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 0.18321 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 -0.11323 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 204.59323 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 -126.30561 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 78.06116 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 78.28746 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 204.59333 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 -126.53201 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 -126.30571 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 78.28756 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 204.36693 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 77.99118 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 204.54998 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 -126.41884 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 408.84693 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 -0.06988 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 -0.04319 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 408.96000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 408.96020 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 330.96882 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 204.41022 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 -126.41884 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.11307 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 409.03008 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 -0.04319 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 VAL A 4 REMARK 465 VAL A 5 REMARK 465 VAL A 6 REMARK 465 LYS A 7 REMARK 465 GLY A 8 REMARK 465 ASN A 9 REMARK 465 VAL A 10 REMARK 465 ASN A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 VAL A 14 REMARK 465 GLN A 15 REMARK 465 GLN A 16 REMARK 465 PRO A 17 REMARK 465 ARG A 18 REMARK 465 MET A 19 REMARK 465 ARG A 20 REMARK 465 ARG A 21 REMARK 465 ARG A 22 REMARK 465 GLN A 23 REMARK 465 SER A 24 REMARK 465 LEU A 25 REMARK 465 ARG A 26 REMARK 465 ARG A 27 REMARK 465 ARG A 28 REMARK 465 ALA A 29 REMARK 465 ASN A 30 REMARK 465 ARG A 31 REMARK 465 VAL A 32 REMARK 465 GLN A 33 REMARK 465 PRO A 34 REMARK 465 VAL A 35 REMARK 465 VAL A 36 REMARK 465 MET A 37 REMARK 465 VAL A 38 REMARK 465 THR A 39 REMARK 465 ALA A 40 REMARK 465 PRO A 41 REMARK 465 GLY A 42 REMARK 465 GLN A 43 REMARK 465 PRO A 44 REMARK 465 ARG A 45 REMARK 465 ARG A 46 REMARK 465 ARG A 47 REMARK 465 ARG A 48 REMARK 465 ARG A 49 REMARK 465 ARG A 50 REMARK 465 ARG A 51 REMARK 465 GLY A 52 REMARK 465 GLY A 53 REMARK 465 ASN A 54 REMARK 465 ARG A 55 REMARK 465 ARG A 56 REMARK 465 SER A 57 REMARK 465 ARG A 58 REMARK 465 ARG A 59 REMARK 465 THR A 60 REMARK 465 GLY A 61 REMARK 465 VAL A 62 REMARK 465 PRO A 63 REMARK 465 ARG A 64 REMARK 465 GLY A 65 REMARK 465 ARG A 66 REMARK 465 GLY A 67 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 THR B 3 REMARK 465 VAL B 4 REMARK 465 VAL B 5 REMARK 465 VAL B 6 REMARK 465 LYS B 7 REMARK 465 GLY B 8 REMARK 465 ASN B 9 REMARK 465 VAL B 10 REMARK 465 ASN B 11 REMARK 465 GLY B 12 REMARK 465 GLY B 13 REMARK 465 VAL B 14 REMARK 465 GLN B 15 REMARK 465 GLN B 16 REMARK 465 PRO B 17 REMARK 465 ARG B 18 REMARK 465 MET B 19 REMARK 465 ARG B 20 REMARK 465 ARG B 21 REMARK 465 ARG B 22 REMARK 465 GLN B 23 REMARK 465 SER B 24 REMARK 465 LEU B 25 REMARK 465 ARG B 26 REMARK 465 ARG B 27 REMARK 465 ARG B 28 REMARK 465 ALA B 29 REMARK 465 ASN B 30 REMARK 465 ARG B 31 REMARK 465 VAL B 32 REMARK 465 GLN B 33 REMARK 465 PRO B 34 REMARK 465 VAL B 35 REMARK 465 VAL B 36 REMARK 465 MET B 37 REMARK 465 VAL B 38 REMARK 465 THR B 39 REMARK 465 ALA B 40 REMARK 465 PRO B 41 REMARK 465 GLY B 42 REMARK 465 GLN B 43 REMARK 465 PRO B 44 REMARK 465 ARG B 45 REMARK 465 ARG B 46 REMARK 465 ARG B 47 REMARK 465 ARG B 48 REMARK 465 ARG B 49 REMARK 465 ARG B 50 REMARK 465 ARG B 51 REMARK 465 GLY B 52 REMARK 465 GLY B 53 REMARK 465 ASN B 54 REMARK 465 ARG B 55 REMARK 465 ARG B 56 REMARK 465 SER B 57 REMARK 465 ARG B 58 REMARK 465 ARG B 59 REMARK 465 THR B 60 REMARK 465 GLY B 61 REMARK 465 VAL B 62 REMARK 465 PRO B 63 REMARK 465 ARG B 64 REMARK 465 GLY B 65 REMARK 465 ARG B 66 REMARK 465 GLY B 67 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 THR C 3 REMARK 465 VAL C 4 REMARK 465 VAL C 5 REMARK 465 VAL C 6 REMARK 465 LYS C 7 REMARK 465 GLY C 8 REMARK 465 ASN C 9 REMARK 465 VAL C 10 REMARK 465 ASN C 11 REMARK 465 GLY C 12 REMARK 465 GLY C 13 REMARK 465 VAL C 14 REMARK 465 GLN C 15 REMARK 465 GLN C 16 REMARK 465 PRO C 17 REMARK 465 ARG C 18 REMARK 465 MET C 19 REMARK 465 ARG C 20 REMARK 465 ARG C 21 REMARK 465 ARG C 22 REMARK 465 GLN C 23 REMARK 465 SER C 24 REMARK 465 LEU C 25 REMARK 465 ARG C 26 REMARK 465 ARG C 27 REMARK 465 ARG C 28 REMARK 465 ALA C 29 REMARK 465 ASN C 30 REMARK 465 ARG C 31 REMARK 465 VAL C 32 REMARK 465 GLN C 33 REMARK 465 PRO C 34 REMARK 465 VAL C 35 REMARK 465 VAL C 36 REMARK 465 MET C 37 REMARK 465 VAL C 38 REMARK 465 THR C 39 REMARK 465 ALA C 40 REMARK 465 PRO C 41 REMARK 465 GLY C 42 REMARK 465 GLN C 43 REMARK 465 PRO C 44 REMARK 465 ARG C 45 REMARK 465 ARG C 46 REMARK 465 ARG C 47 REMARK 465 ARG C 48 REMARK 465 ARG C 49 REMARK 465 ARG C 50 REMARK 465 ARG C 51 REMARK 465 GLY C 52 REMARK 465 GLY C 53 REMARK 465 ASN C 54 REMARK 465 ARG C 55 REMARK 465 ARG C 56 REMARK 465 SER C 57 REMARK 465 ARG C 58 REMARK 465 ARG C 59 REMARK 465 THR C 60 REMARK 465 GLY C 61 REMARK 465 VAL C 62 REMARK 465 PRO C 63 REMARK 465 ARG C 64 REMARK 465 GLY C 65 REMARK 465 ARG C 66 REMARK 465 GLY C 67 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 77 -164.35 -76.71 REMARK 500 ASN A 82 40.00 -103.01 REMARK 500 ASP A 136 77.37 52.60 REMARK 500 GLN A 178 -60.94 -94.02 REMARK 500 ALA A 193 46.83 -141.22 REMARK 500 SER A 195 -157.46 -158.17 REMARK 500 PHE A 196 64.25 65.54 REMARK 500 GLN A 205 -30.09 -130.19 REMARK 500 ASP B 77 -164.34 -76.66 REMARK 500 ASP B 136 77.46 52.53 REMARK 500 GLN B 178 -60.96 -94.03 REMARK 500 ALA B 193 46.73 -141.16 REMARK 500 SER B 195 -157.49 -158.24 REMARK 500 PHE B 196 64.24 65.55 REMARK 500 GLN B 205 -30.04 -130.22 REMARK 500 ASP C 77 -164.31 -76.72 REMARK 500 ASP C 136 77.44 52.57 REMARK 500 GLN C 178 -60.95 -94.07 REMARK 500 ALA C 193 46.81 -141.19 REMARK 500 SER C 195 -157.52 -158.24 REMARK 500 PHE C 196 64.22 65.58 REMARK 500 GLN C 205 -30.14 -130.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10142 RELATED DB: EMDB REMARK 900 BYDV VLP STRUCTURE REMARK 900 RELATED ID: EMD-10144 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF POTATO LEAF ROLL VIRUS VLP DBREF 6SCO A 1 208 UNP Q76QV9 Q76QV9_PLRV 1 208 DBREF 6SCO B 1 208 UNP Q76QV9 Q76QV9_PLRV 1 208 DBREF 6SCO C 1 208 UNP Q76QV9 Q76QV9_PLRV 1 208 SEQRES 1 A 208 MET SER THR VAL VAL VAL LYS GLY ASN VAL ASN GLY GLY SEQRES 2 A 208 VAL GLN GLN PRO ARG MET ARG ARG ARG GLN SER LEU ARG SEQRES 3 A 208 ARG ARG ALA ASN ARG VAL GLN PRO VAL VAL MET VAL THR SEQRES 4 A 208 ALA PRO GLY GLN PRO ARG ARG ARG ARG ARG ARG ARG GLY SEQRES 5 A 208 GLY ASN ARG ARG SER ARG ARG THR GLY VAL PRO ARG GLY SEQRES 6 A 208 ARG GLY SER SER GLU THR PHE VAL PHE THR LYS ASP ASN SEQRES 7 A 208 LEU VAL GLY ASN THR GLN GLY SER PHE THR PHE GLY PRO SEQRES 8 A 208 SER LEU SER ASP CYS PRO ALA PHE LYS ASP GLY ILE LEU SEQRES 9 A 208 LYS ALA TYR HIS GLU TYR LYS ILE THR SER ILE LEU LEU SEQRES 10 A 208 GLN PHE VAL SER GLU ALA SER SER THR SER SER GLY SER SEQRES 11 A 208 ILE ALA TYR GLU LEU ASP PRO HIS CYS LYS VAL SER SER SEQRES 12 A 208 LEU GLN SER TYR VAL ASN LYS PHE GLN ILE THR LYS GLY SEQRES 13 A 208 GLY ALA LYS THR TYR GLN ALA ARG MET ILE ASN GLY VAL SEQRES 14 A 208 GLU TRP HIS ASP SER SER GLU ASP GLN CYS ARG ILE LEU SEQRES 15 A 208 TRP LYS GLY ASN GLY LYS SER SER ASP SER ALA GLY SER SEQRES 16 A 208 PHE ARG VAL THR ILE LYS VAL ALA LEU GLN ASN PRO LYS SEQRES 1 B 208 MET SER THR VAL VAL VAL LYS GLY ASN VAL ASN GLY GLY SEQRES 2 B 208 VAL GLN GLN PRO ARG MET ARG ARG ARG GLN SER LEU ARG SEQRES 3 B 208 ARG ARG ALA ASN ARG VAL GLN PRO VAL VAL MET VAL THR SEQRES 4 B 208 ALA PRO GLY GLN PRO ARG ARG ARG ARG ARG ARG ARG GLY SEQRES 5 B 208 GLY ASN ARG ARG SER ARG ARG THR GLY VAL PRO ARG GLY SEQRES 6 B 208 ARG GLY SER SER GLU THR PHE VAL PHE THR LYS ASP ASN SEQRES 7 B 208 LEU VAL GLY ASN THR GLN GLY SER PHE THR PHE GLY PRO SEQRES 8 B 208 SER LEU SER ASP CYS PRO ALA PHE LYS ASP GLY ILE LEU SEQRES 9 B 208 LYS ALA TYR HIS GLU TYR LYS ILE THR SER ILE LEU LEU SEQRES 10 B 208 GLN PHE VAL SER GLU ALA SER SER THR SER SER GLY SER SEQRES 11 B 208 ILE ALA TYR GLU LEU ASP PRO HIS CYS LYS VAL SER SER SEQRES 12 B 208 LEU GLN SER TYR VAL ASN LYS PHE GLN ILE THR LYS GLY SEQRES 13 B 208 GLY ALA LYS THR TYR GLN ALA ARG MET ILE ASN GLY VAL SEQRES 14 B 208 GLU TRP HIS ASP SER SER GLU ASP GLN CYS ARG ILE LEU SEQRES 15 B 208 TRP LYS GLY ASN GLY LYS SER SER ASP SER ALA GLY SER SEQRES 16 B 208 PHE ARG VAL THR ILE LYS VAL ALA LEU GLN ASN PRO LYS SEQRES 1 C 208 MET SER THR VAL VAL VAL LYS GLY ASN VAL ASN GLY GLY SEQRES 2 C 208 VAL GLN GLN PRO ARG MET ARG ARG ARG GLN SER LEU ARG SEQRES 3 C 208 ARG ARG ALA ASN ARG VAL GLN PRO VAL VAL MET VAL THR SEQRES 4 C 208 ALA PRO GLY GLN PRO ARG ARG ARG ARG ARG ARG ARG GLY SEQRES 5 C 208 GLY ASN ARG ARG SER ARG ARG THR GLY VAL PRO ARG GLY SEQRES 6 C 208 ARG GLY SER SER GLU THR PHE VAL PHE THR LYS ASP ASN SEQRES 7 C 208 LEU VAL GLY ASN THR GLN GLY SER PHE THR PHE GLY PRO SEQRES 8 C 208 SER LEU SER ASP CYS PRO ALA PHE LYS ASP GLY ILE LEU SEQRES 9 C 208 LYS ALA TYR HIS GLU TYR LYS ILE THR SER ILE LEU LEU SEQRES 10 C 208 GLN PHE VAL SER GLU ALA SER SER THR SER SER GLY SER SEQRES 11 C 208 ILE ALA TYR GLU LEU ASP PRO HIS CYS LYS VAL SER SER SEQRES 12 C 208 LEU GLN SER TYR VAL ASN LYS PHE GLN ILE THR LYS GLY SEQRES 13 C 208 GLY ALA LYS THR TYR GLN ALA ARG MET ILE ASN GLY VAL SEQRES 14 C 208 GLU TRP HIS ASP SER SER GLU ASP GLN CYS ARG ILE LEU SEQRES 15 C 208 TRP LYS GLY ASN GLY LYS SER SER ASP SER ALA GLY SER SEQRES 16 C 208 PHE ARG VAL THR ILE LYS VAL ALA LEU GLN ASN PRO LYS HELIX 1 AA1 CYS A 96 ASP A 101 1 6 HELIX 2 AA2 GLY A 102 TYR A 107 5 6 HELIX 3 AA3 CYS B 96 ASP B 101 1 6 HELIX 4 AA4 GLY B 102 TYR B 107 5 6 HELIX 5 AA5 CYS C 96 ASP C 101 1 6 HELIX 6 AA6 GLY C 102 TYR C 107 5 6 SHEET 1 AA1 4 GLU A 70 PHE A 74 0 SHEET 2 AA1 4 ARG A 197 LEU A 204 -1 O VAL A 198 N PHE A 74 SHEET 3 AA1 4 GLU A 109 PHE A 119 -1 N LYS A 111 O ALA A 203 SHEET 4 AA1 4 GLY A 157 TYR A 161 -1 O TYR A 161 N ILE A 115 SHEET 1 AA2 4 GLU A 70 PHE A 74 0 SHEET 2 AA2 4 ARG A 197 LEU A 204 -1 O VAL A 198 N PHE A 74 SHEET 3 AA2 4 GLU A 109 PHE A 119 -1 N LYS A 111 O ALA A 203 SHEET 4 AA2 4 HIS A 172 ASP A 173 -1 O HIS A 172 N TYR A 110 SHEET 1 AA3 4 GLN A 84 THR A 88 0 SHEET 2 AA3 4 ARG A 180 GLY A 185 -1 O ILE A 181 N PHE A 87 SHEET 3 AA3 4 SER A 130 GLU A 134 -1 N ALA A 132 O LYS A 184 SHEET 4 AA3 4 LYS A 150 GLN A 152 -1 O PHE A 151 N ILE A 131 SHEET 1 AA4 4 GLU B 70 PHE B 74 0 SHEET 2 AA4 4 ARG B 197 LEU B 204 -1 O VAL B 198 N PHE B 74 SHEET 3 AA4 4 GLU B 109 PHE B 119 -1 N LYS B 111 O ALA B 203 SHEET 4 AA4 4 GLY B 157 TYR B 161 -1 O TYR B 161 N ILE B 115 SHEET 1 AA5 4 GLU B 70 PHE B 74 0 SHEET 2 AA5 4 ARG B 197 LEU B 204 -1 O VAL B 198 N PHE B 74 SHEET 3 AA5 4 GLU B 109 PHE B 119 -1 N LYS B 111 O ALA B 203 SHEET 4 AA5 4 HIS B 172 ASP B 173 -1 O HIS B 172 N TYR B 110 SHEET 1 AA6 4 GLN B 84 THR B 88 0 SHEET 2 AA6 4 ARG B 180 GLY B 185 -1 O ILE B 181 N PHE B 87 SHEET 3 AA6 4 SER B 130 GLU B 134 -1 N ALA B 132 O LYS B 184 SHEET 4 AA6 4 LYS B 150 GLN B 152 -1 O PHE B 151 N ILE B 131 SHEET 1 AA7 4 GLU C 70 PHE C 74 0 SHEET 2 AA7 4 ARG C 197 LEU C 204 -1 O VAL C 198 N PHE C 74 SHEET 3 AA7 4 GLU C 109 PHE C 119 -1 N LYS C 111 O ALA C 203 SHEET 4 AA7 4 GLY C 157 TYR C 161 -1 O TYR C 161 N ILE C 115 SHEET 1 AA8 4 GLU C 70 PHE C 74 0 SHEET 2 AA8 4 ARG C 197 LEU C 204 -1 O VAL C 198 N PHE C 74 SHEET 3 AA8 4 GLU C 109 PHE C 119 -1 N LYS C 111 O ALA C 203 SHEET 4 AA8 4 HIS C 172 ASP C 173 -1 O HIS C 172 N TYR C 110 SHEET 1 AA9 4 GLN C 84 THR C 88 0 SHEET 2 AA9 4 ARG C 180 GLY C 185 -1 O ILE C 181 N PHE C 87 SHEET 3 AA9 4 SER C 130 GLU C 134 -1 N ALA C 132 O LYS C 184 SHEET 4 AA9 4 LYS C 150 GLN C 152 -1 O PHE C 151 N ILE C 131 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000