HEADER HYDROLASE 25-JUL-19 6SCX TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN NUDT12 IN COMPLEX TITLE 2 WITH 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXISOMAL NADH PYROPHOSPHATASE NUDT12; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 12,NUDIX MOTIF COMPND 5 12; COMPND 6 EC: 3.6.1.22; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM-11-SUMO KEYWDS NUDIX PROTEIN, DENADDING ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.MCCARTHY,K.M.CHEN,H.WU,L.LI,D.HOMOLKA,P.GOS,F.FLEURY-OLELA, AUTHOR 2 R.S.PILLAI REVDAT 2 24-JAN-24 6SCX 1 REMARK LINK REVDAT 1 08-JAN-20 6SCX 0 JRNL AUTH H.WU,L.LI,K.M.CHEN,D.HOMOLKA,P.GOS,F.FLEURY-OLELA, JRNL AUTH 2 A.A.MCCARTHY,R.S.PILLAI JRNL TITL DECAPPING ENZYME NUDT12 PARTNERS WITH BLMH FOR CYTOPLASMIC JRNL TITL 2 SURVEILLANCE OF NAD-CAPPED RNAS. JRNL REF CELL REP V. 29 4422 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 31875550 JRNL DOI 10.1016/J.CELREP.2019.11.108 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 114.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 60.2 REMARK 3 NUMBER OF REFLECTIONS : 21142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1062 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 8.36 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 423 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2889 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 397 REMARK 3 BIN R VALUE (WORKING SET) : 0.2887 REMARK 3 BIN FREE R VALUE : 0.2914 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 6.15 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 26 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7556 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 108 REMARK 3 SOLVENT ATOMS : 4 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.80370 REMARK 3 B22 (A**2) : -1.80370 REMARK 3 B33 (A**2) : 3.60750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.550 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.525 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.897 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 7948 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 10860 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2675 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 1402 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 7948 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1039 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 8775 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 0.90 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.10 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.16 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -37.0682 23.2226 -37.1947 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -28.3525 33.6592 -16.1882 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -42.5081 7.1121 -69.3530 REMARK 3 T TENSOR REMARK 3 T11: 0.0000 T22: 0.0000 REMARK 3 T33: 0.0000 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: 0.0000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103500. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0077 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MAR 15, 2019 REMARK 200 DATA SCALING SOFTWARE : POINTLESS 1.11.21, AUTOPROC REMARK 200 1.0.5, STARANISO 2.2.19 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21142 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 114.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.11700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 1.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 6O3P REMARK 200 REMARK 200 REMARK: LONG RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350 0.2M POTASSIUM REMARK 280 CITRATE TRIBASIC MONOHYDRATE 0.02M CDCL(2) 0.02M M7GTP, PH 8.3, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 114.92950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.35458 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 53.00400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 114.92950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 66.35458 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 53.00400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 114.92950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 66.35458 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 53.00400 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 114.92950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 66.35458 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.00400 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 114.92950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 66.35458 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.00400 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 114.92950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 66.35458 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.00400 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 132.70916 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 106.00800 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 132.70916 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 106.00800 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 132.70916 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 106.00800 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 132.70916 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 106.00800 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 132.70916 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 106.00800 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 132.70916 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 106.00800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -159.01200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 111 REMARK 465 ASN A 112 REMARK 465 GLU A 113 REMARK 465 VAL A 114 REMARK 465 GLY A 164 REMARK 465 ASN A 165 REMARK 465 LYS A 208 REMARK 465 LEU A 209 REMARK 465 LEU A 210 REMARK 465 ASN A 211 REMARK 465 TYR A 212 REMARK 465 ALA A 213 REMARK 465 GLY A 214 REMARK 465 GLU A 215 REMARK 465 VAL A 216 REMARK 465 PRO A 217 REMARK 465 ARG A 218 REMARK 465 GLU A 219 REMARK 465 GLU A 220 REMARK 465 LYS A 435 REMARK 465 GLN A 436 REMARK 465 PRO A 460 REMARK 465 ASN A 461 REMARK 465 LEU A 462 REMARK 465 THR B 111 REMARK 465 ASN B 112 REMARK 465 GLU B 113 REMARK 465 VAL B 114 REMARK 465 GLY B 164 REMARK 465 ASN B 165 REMARK 465 ILE B 205 REMARK 465 LYS B 206 REMARK 465 ASP B 207 REMARK 465 LYS B 208 REMARK 465 LEU B 209 REMARK 465 LEU B 210 REMARK 465 ASN B 211 REMARK 465 TYR B 212 REMARK 465 ALA B 213 REMARK 465 GLY B 214 REMARK 465 GLU B 215 REMARK 465 VAL B 216 REMARK 465 PRO B 217 REMARK 465 ARG B 218 REMARK 465 GLU B 219 REMARK 465 GLU B 220 REMARK 465 LYS B 435 REMARK 465 GLN B 436 REMARK 465 PRO B 460 REMARK 465 ASN B 461 REMARK 465 LEU B 462 REMARK 465 THR C 111 REMARK 465 ASN C 112 REMARK 465 GLU C 113 REMARK 465 VAL C 114 REMARK 465 GLY C 163 REMARK 465 GLY C 164 REMARK 465 ASN C 165 REMARK 465 GLU C 204 REMARK 465 ILE C 205 REMARK 465 LYS C 206 REMARK 465 ASP C 207 REMARK 465 LYS C 208 REMARK 465 LEU C 209 REMARK 465 LEU C 210 REMARK 465 ASN C 211 REMARK 465 TYR C 212 REMARK 465 ALA C 213 REMARK 465 GLY C 214 REMARK 465 GLU C 215 REMARK 465 VAL C 216 REMARK 465 PRO C 217 REMARK 465 ARG C 218 REMARK 465 GLU C 219 REMARK 465 GLU C 220 REMARK 465 LYS C 435 REMARK 465 GLN C 436 REMARK 465 PRO C 460 REMARK 465 ASN C 461 REMARK 465 LEU C 462 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 GLN A 171 CG CD OE1 NE2 REMARK 470 TYR A 187 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 192 CG CD OE1 OE2 REMARK 470 LYS A 193 CG CD CE NZ REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 470 ILE A 205 CG1 CG2 CD1 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 ASP A 207 CG OD1 OD2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 ASP A 222 CG OD1 OD2 REMARK 470 ILE A 232 CG1 CG2 CD1 REMARK 470 LYS A 241 CG CD CE NZ REMARK 470 ARG A 243 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 244 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 HIS A 381 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 403 CG CD1 CD2 REMARK 470 LYS A 433 CG CD CE NZ REMARK 470 ARG A 457 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 458 CG1 CG2 CD1 REMARK 470 ASN A 459 CG OD1 ND2 REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 GLN B 171 CG CD OE1 NE2 REMARK 470 LYS B 185 CG CD CE NZ REMARK 470 GLN B 190 CG CD OE1 NE2 REMARK 470 LYS B 193 CG CD CE NZ REMARK 470 GLU B 204 CG CD OE1 OE2 REMARK 470 GLU B 221 CG CD OE1 OE2 REMARK 470 ASP B 222 CG OD1 OD2 REMARK 470 LYS B 241 CG CD CE NZ REMARK 470 ARG B 243 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 244 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 304 CG CD CE NZ REMARK 470 LEU B 403 CG CD1 CD2 REMARK 470 LYS B 433 CG CD CE NZ REMARK 470 ARG B 457 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 458 CG1 CG2 CD1 REMARK 470 ASN B 459 CG OD1 ND2 REMARK 470 LYS C 166 CG CD CE NZ REMARK 470 GLU C 167 CG CD OE1 OE2 REMARK 470 PHE C 169 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 171 CG CD OE1 NE2 REMARK 470 TYR C 187 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 221 CG CD OE1 OE2 REMARK 470 ASP C 222 CG OD1 OD2 REMARK 470 LYS C 241 CG CD CE NZ REMARK 470 ARG C 243 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 244 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 304 CG CD CE NZ REMARK 470 LYS C 343 CG CD CE NZ REMARK 470 LEU C 403 CG CD1 CD2 REMARK 470 LYS C 433 CG CD CE NZ REMARK 470 ARG C 457 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 458 CG1 CG2 CD1 REMARK 470 ASN C 459 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 117 120.55 -31.96 REMARK 500 TYR A 120 130.27 -34.37 REMARK 500 PHE A 121 -7.38 92.14 REMARK 500 ASN A 135 70.59 -111.52 REMARK 500 THR A 161 -169.58 -107.09 REMARK 500 PHE A 169 -37.21 75.55 REMARK 500 CYS A 177 91.04 -63.48 REMARK 500 GLN A 190 78.53 -111.67 REMARK 500 GLU A 204 70.83 -160.50 REMARK 500 GLU A 245 -48.98 63.60 REMARK 500 VAL A 385 -54.05 -124.29 REMARK 500 LYS A 413 -24.29 75.70 REMARK 500 THR A 432 -93.35 -99.65 REMARK 500 LYS A 433 86.54 -163.68 REMARK 500 CYS B 117 121.41 -30.87 REMARK 500 TYR B 120 130.40 -35.22 REMARK 500 PHE B 121 -6.72 90.94 REMARK 500 ASN B 135 70.34 -112.40 REMARK 500 PHE B 169 -18.47 71.74 REMARK 500 CYS B 177 92.27 -65.00 REMARK 500 GLN B 190 77.94 -113.12 REMARK 500 GLU B 245 -50.85 64.99 REMARK 500 VAL B 385 -54.13 -122.14 REMARK 500 LYS B 413 -24.00 76.54 REMARK 500 THR B 432 -92.77 -100.74 REMARK 500 LYS B 433 85.23 -162.78 REMARK 500 CYS C 117 119.14 -31.49 REMARK 500 TYR C 120 129.74 -22.70 REMARK 500 PHE C 121 -6.15 89.78 REMARK 500 ASN C 135 70.28 -113.42 REMARK 500 THR C 161 -168.77 -105.35 REMARK 500 CYS C 177 90.66 -62.43 REMARK 500 GLN C 190 78.55 -112.14 REMARK 500 GLU C 245 -49.91 62.82 REMARK 500 VAL C 385 -53.41 -124.40 REMARK 500 LYS C 413 -24.15 75.54 REMARK 500 THR C 432 -92.08 -101.26 REMARK 500 LYS C 433 87.66 -162.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 504 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 251 NE2 REMARK 620 2 HIS C 251 NE2 90.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 501 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 284 SG REMARK 620 2 CYS A 287 SG 111.1 REMARK 620 3 CYS A 302 SG 109.7 96.7 REMARK 620 4 CYS A 307 SG 111.9 120.0 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 501 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 284 SG REMARK 620 2 CYS B 287 SG 107.3 REMARK 620 3 CYS B 302 SG 108.9 94.1 REMARK 620 4 CYS B 307 SG 115.5 115.9 113.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD C 501 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 284 SG REMARK 620 2 CYS C 287 SG 105.5 REMARK 620 3 CYS C 302 SG 105.6 97.8 REMARK 620 4 CYS C 307 SG 111.5 124.2 110.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MGP A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MGP B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MGP C 503 DBREF 6SCX A 111 462 UNP Q9BQG2 NUD12_HUMAN 111 462 DBREF 6SCX B 111 462 UNP Q9BQG2 NUD12_HUMAN 111 462 DBREF 6SCX C 111 462 UNP Q9BQG2 NUD12_HUMAN 111 462 SEQRES 1 A 352 THR ASN GLU VAL GLU GLU CYS GLU ASN TYR PHE SER LYS SEQRES 2 A 352 THR LEU LEU ASP ARG LYS SER GLU LYS ARG ASN ASN SER SEQRES 3 A 352 ASP TRP LEU LEU ALA LYS GLU SER HIS PRO ALA THR VAL SEQRES 4 A 352 PHE ILE LEU PHE SER ASP LEU ASN PRO LEU VAL THR LEU SEQRES 5 A 352 GLY GLY ASN LYS GLU SER PHE GLN GLN PRO GLU VAL ARG SEQRES 6 A 352 LEU CYS GLN LEU ASN TYR THR ASP ILE LYS ASP TYR LEU SEQRES 7 A 352 ALA GLN PRO GLU LYS ILE THR LEU ILE PHE LEU GLY VAL SEQRES 8 A 352 GLU LEU GLU ILE LYS ASP LYS LEU LEU ASN TYR ALA GLY SEQRES 9 A 352 GLU VAL PRO ARG GLU GLU GLU ASP GLY LEU VAL ALA TRP SEQRES 10 A 352 PHE ALA LEU GLY ILE ASP PRO ILE ALA ALA GLU GLU PHE SEQRES 11 A 352 LYS GLN ARG HIS GLU ASN CYS TYR PHE LEU HIS PRO PRO SEQRES 12 A 352 MET PRO ALA LEU LEU GLN LEU LYS GLU LYS GLU ALA GLY SEQRES 13 A 352 VAL VAL ALA GLN ALA ARG SER VAL LEU ALA TRP HIS SER SEQRES 14 A 352 ARG TYR LYS PHE CYS PRO THR CYS GLY ASN ALA THR LYS SEQRES 15 A 352 ILE GLU GLU GLY GLY TYR LYS ARG LEU CYS LEU LYS GLU SEQRES 16 A 352 ASP CYS PRO SER LEU ASN GLY VAL HIS ASN THR SER TYR SEQRES 17 A 352 PRO ARG VAL ASP PRO VAL VAL ILE MET GLN VAL ILE HIS SEQRES 18 A 352 PRO ASP GLY THR LYS CYS LEU LEU GLY ARG GLN LYS ARG SEQRES 19 A 352 PHE PRO PRO GLY MET PHE THR CYS LEU ALA GLY PHE ILE SEQRES 20 A 352 GLU PRO GLY GLU THR ILE GLU ASP ALA VAL ARG ARG GLU SEQRES 21 A 352 VAL GLU GLU GLU SER GLY VAL LYS VAL GLY HIS VAL GLN SEQRES 22 A 352 TYR VAL ALA CYS GLN PRO TRP PRO MET PRO SER SER LEU SEQRES 23 A 352 MET ILE GLY CYS LEU ALA LEU ALA VAL SER THR GLU ILE SEQRES 24 A 352 LYS VAL ASP LYS ASN GLU ILE GLU ASP ALA ARG TRP PHE SEQRES 25 A 352 THR ARG GLU GLN VAL LEU ASP VAL LEU THR LYS GLY LYS SEQRES 26 A 352 GLN GLN ALA PHE PHE VAL PRO PRO SER ARG ALA ILE ALA SEQRES 27 A 352 HIS GLN LEU ILE LYS HIS TRP ILE ARG ILE ASN PRO ASN SEQRES 28 A 352 LEU SEQRES 1 B 352 THR ASN GLU VAL GLU GLU CYS GLU ASN TYR PHE SER LYS SEQRES 2 B 352 THR LEU LEU ASP ARG LYS SER GLU LYS ARG ASN ASN SER SEQRES 3 B 352 ASP TRP LEU LEU ALA LYS GLU SER HIS PRO ALA THR VAL SEQRES 4 B 352 PHE ILE LEU PHE SER ASP LEU ASN PRO LEU VAL THR LEU SEQRES 5 B 352 GLY GLY ASN LYS GLU SER PHE GLN GLN PRO GLU VAL ARG SEQRES 6 B 352 LEU CYS GLN LEU ASN TYR THR ASP ILE LYS ASP TYR LEU SEQRES 7 B 352 ALA GLN PRO GLU LYS ILE THR LEU ILE PHE LEU GLY VAL SEQRES 8 B 352 GLU LEU GLU ILE LYS ASP LYS LEU LEU ASN TYR ALA GLY SEQRES 9 B 352 GLU VAL PRO ARG GLU GLU GLU ASP GLY LEU VAL ALA TRP SEQRES 10 B 352 PHE ALA LEU GLY ILE ASP PRO ILE ALA ALA GLU GLU PHE SEQRES 11 B 352 LYS GLN ARG HIS GLU ASN CYS TYR PHE LEU HIS PRO PRO SEQRES 12 B 352 MET PRO ALA LEU LEU GLN LEU LYS GLU LYS GLU ALA GLY SEQRES 13 B 352 VAL VAL ALA GLN ALA ARG SER VAL LEU ALA TRP HIS SER SEQRES 14 B 352 ARG TYR LYS PHE CYS PRO THR CYS GLY ASN ALA THR LYS SEQRES 15 B 352 ILE GLU GLU GLY GLY TYR LYS ARG LEU CYS LEU LYS GLU SEQRES 16 B 352 ASP CYS PRO SER LEU ASN GLY VAL HIS ASN THR SER TYR SEQRES 17 B 352 PRO ARG VAL ASP PRO VAL VAL ILE MET GLN VAL ILE HIS SEQRES 18 B 352 PRO ASP GLY THR LYS CYS LEU LEU GLY ARG GLN LYS ARG SEQRES 19 B 352 PHE PRO PRO GLY MET PHE THR CYS LEU ALA GLY PHE ILE SEQRES 20 B 352 GLU PRO GLY GLU THR ILE GLU ASP ALA VAL ARG ARG GLU SEQRES 21 B 352 VAL GLU GLU GLU SER GLY VAL LYS VAL GLY HIS VAL GLN SEQRES 22 B 352 TYR VAL ALA CYS GLN PRO TRP PRO MET PRO SER SER LEU SEQRES 23 B 352 MET ILE GLY CYS LEU ALA LEU ALA VAL SER THR GLU ILE SEQRES 24 B 352 LYS VAL ASP LYS ASN GLU ILE GLU ASP ALA ARG TRP PHE SEQRES 25 B 352 THR ARG GLU GLN VAL LEU ASP VAL LEU THR LYS GLY LYS SEQRES 26 B 352 GLN GLN ALA PHE PHE VAL PRO PRO SER ARG ALA ILE ALA SEQRES 27 B 352 HIS GLN LEU ILE LYS HIS TRP ILE ARG ILE ASN PRO ASN SEQRES 28 B 352 LEU SEQRES 1 C 352 THR ASN GLU VAL GLU GLU CYS GLU ASN TYR PHE SER LYS SEQRES 2 C 352 THR LEU LEU ASP ARG LYS SER GLU LYS ARG ASN ASN SER SEQRES 3 C 352 ASP TRP LEU LEU ALA LYS GLU SER HIS PRO ALA THR VAL SEQRES 4 C 352 PHE ILE LEU PHE SER ASP LEU ASN PRO LEU VAL THR LEU SEQRES 5 C 352 GLY GLY ASN LYS GLU SER PHE GLN GLN PRO GLU VAL ARG SEQRES 6 C 352 LEU CYS GLN LEU ASN TYR THR ASP ILE LYS ASP TYR LEU SEQRES 7 C 352 ALA GLN PRO GLU LYS ILE THR LEU ILE PHE LEU GLY VAL SEQRES 8 C 352 GLU LEU GLU ILE LYS ASP LYS LEU LEU ASN TYR ALA GLY SEQRES 9 C 352 GLU VAL PRO ARG GLU GLU GLU ASP GLY LEU VAL ALA TRP SEQRES 10 C 352 PHE ALA LEU GLY ILE ASP PRO ILE ALA ALA GLU GLU PHE SEQRES 11 C 352 LYS GLN ARG HIS GLU ASN CYS TYR PHE LEU HIS PRO PRO SEQRES 12 C 352 MET PRO ALA LEU LEU GLN LEU LYS GLU LYS GLU ALA GLY SEQRES 13 C 352 VAL VAL ALA GLN ALA ARG SER VAL LEU ALA TRP HIS SER SEQRES 14 C 352 ARG TYR LYS PHE CYS PRO THR CYS GLY ASN ALA THR LYS SEQRES 15 C 352 ILE GLU GLU GLY GLY TYR LYS ARG LEU CYS LEU LYS GLU SEQRES 16 C 352 ASP CYS PRO SER LEU ASN GLY VAL HIS ASN THR SER TYR SEQRES 17 C 352 PRO ARG VAL ASP PRO VAL VAL ILE MET GLN VAL ILE HIS SEQRES 18 C 352 PRO ASP GLY THR LYS CYS LEU LEU GLY ARG GLN LYS ARG SEQRES 19 C 352 PHE PRO PRO GLY MET PHE THR CYS LEU ALA GLY PHE ILE SEQRES 20 C 352 GLU PRO GLY GLU THR ILE GLU ASP ALA VAL ARG ARG GLU SEQRES 21 C 352 VAL GLU GLU GLU SER GLY VAL LYS VAL GLY HIS VAL GLN SEQRES 22 C 352 TYR VAL ALA CYS GLN PRO TRP PRO MET PRO SER SER LEU SEQRES 23 C 352 MET ILE GLY CYS LEU ALA LEU ALA VAL SER THR GLU ILE SEQRES 24 C 352 LYS VAL ASP LYS ASN GLU ILE GLU ASP ALA ARG TRP PHE SEQRES 25 C 352 THR ARG GLU GLN VAL LEU ASP VAL LEU THR LYS GLY LYS SEQRES 26 C 352 GLN GLN ALA PHE PHE VAL PRO PRO SER ARG ALA ILE ALA SEQRES 27 C 352 HIS GLN LEU ILE LYS HIS TRP ILE ARG ILE ASN PRO ASN SEQRES 28 C 352 LEU HET CD A 501 1 HET CD A 502 1 HET CD A 503 1 HET CD A 504 1 HET MGP A 505 66 HET CD B 501 1 HET CD B 502 1 HET CD B 503 1 HET MGP B 504 66 HET CD C 501 1 HET CD C 502 1 HET MGP C 503 66 HETNAM CD CADMIUM ION HETNAM MGP 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE FORMUL 4 CD 9(CD 2+) FORMUL 8 MGP 3(C11 H19 N5 O14 P3 1+) FORMUL 16 HOH *4(H2 O) HELIX 1 AA1 LYS A 129 ASN A 134 5 6 HELIX 2 AA2 ASN A 135 HIS A 145 1 11 HELIX 3 AA3 ASN A 180 ALA A 189 1 10 HELIX 4 AA4 ASP A 233 GLU A 245 1 13 HELIX 5 AA5 PRO A 252 LEU A 257 1 6 HELIX 6 AA6 LEU A 258 LEU A 260 5 3 HELIX 7 AA7 LYS A 261 TYR A 281 1 21 HELIX 8 AA8 CYS A 307 ASN A 311 5 5 HELIX 9 AA9 HIS A 314 TYR A 318 5 5 HELIX 10 AB1 THR A 362 GLY A 376 1 15 HELIX 11 AB2 ARG A 424 THR A 432 1 9 HELIX 12 AB3 ALA A 446 ASN A 459 1 14 HELIX 13 AB4 LYS B 129 ASN B 134 5 6 HELIX 14 AB5 ASN B 135 HIS B 145 1 11 HELIX 15 AB6 ASN B 180 ALA B 189 1 10 HELIX 16 AB7 ASP B 233 GLU B 245 1 13 HELIX 17 AB8 PRO B 252 LEU B 257 1 6 HELIX 18 AB9 LEU B 258 LEU B 260 5 3 HELIX 19 AC1 LYS B 261 TYR B 281 1 21 HELIX 20 AC2 CYS B 307 ASN B 311 5 5 HELIX 21 AC3 HIS B 314 TYR B 318 5 5 HELIX 22 AC4 THR B 362 GLY B 376 1 15 HELIX 23 AC5 ARG B 424 THR B 432 1 9 HELIX 24 AC6 ALA B 446 ASN B 459 1 14 HELIX 25 AC7 LYS C 129 ASN C 134 5 6 HELIX 26 AC8 ASN C 135 HIS C 145 1 11 HELIX 27 AC9 ASN C 180 ALA C 189 1 10 HELIX 28 AD1 ASP C 233 GLU C 245 1 13 HELIX 29 AD2 PRO C 252 LEU C 257 1 6 HELIX 30 AD3 LEU C 258 LEU C 260 5 3 HELIX 31 AD4 LYS C 261 TYR C 281 1 21 HELIX 32 AD5 CYS C 307 ASN C 311 5 5 HELIX 33 AD6 HIS C 314 TYR C 318 5 5 HELIX 34 AD7 THR C 362 GLY C 376 1 15 HELIX 35 AD8 ARG C 424 THR C 432 1 9 HELIX 36 AD9 ALA C 446 ASN C 459 1 14 SHEET 1 AA1 6 LEU A 126 ASP A 127 0 SHEET 2 AA1 6 THR A 195 GLU A 202 -1 O VAL A 201 N ASP A 127 SHEET 3 AA1 6 ALA A 226 ILE A 232 -1 O GLY A 231 N THR A 195 SHEET 4 AA1 6 VAL A 149 SER A 154 1 N VAL A 149 O ALA A 226 SHEET 5 AA1 6 ASN A 157 LEU A 162 -1 O LEU A 159 N LEU A 152 SHEET 6 AA1 6 VAL A 174 LEU A 176 -1 O ARG A 175 N THR A 161 SHEET 1 AA2 6 LEU A 126 ASP A 127 0 SHEET 2 AA2 6 THR A 195 GLU A 202 -1 O VAL A 201 N ASP A 127 SHEET 3 AA2 6 ALA A 226 ILE A 232 -1 O GLY A 231 N THR A 195 SHEET 4 AA2 6 VAL A 149 SER A 154 1 N VAL A 149 O ALA A 226 SHEET 5 AA2 6 ASN A 157 LEU A 162 -1 O LEU A 159 N LEU A 152 SHEET 6 AA2 6 TYR A 248 PHE A 249 -1 O TYR A 248 N VAL A 160 SHEET 1 AA3 2 THR A 291 GLU A 294 0 SHEET 2 AA3 2 LYS A 299 CYS A 302 -1 O LEU A 301 N LYS A 292 SHEET 1 AA4 4 LEU A 353 PHE A 356 0 SHEET 2 AA4 4 PRO A 323 ILE A 330 -1 N VAL A 325 O GLY A 355 SHEET 3 AA4 4 LEU A 396 ALA A 404 1 O ALA A 404 N ILE A 330 SHEET 4 AA4 4 VAL A 379 PRO A 389 -1 N GLN A 383 O LEU A 401 SHEET 1 AA5 4 LEU A 353 PHE A 356 0 SHEET 2 AA5 4 PRO A 323 ILE A 330 -1 N VAL A 325 O GLY A 355 SHEET 3 AA5 4 LYS A 336 ARG A 341 -1 O LEU A 338 N VAL A 329 SHEET 4 AA5 4 ASP A 418 THR A 423 -1 O PHE A 422 N CYS A 337 SHEET 1 AA6 6 LEU B 126 ASP B 127 0 SHEET 2 AA6 6 THR B 195 GLU B 202 -1 O VAL B 201 N ASP B 127 SHEET 3 AA6 6 ALA B 226 ILE B 232 -1 O GLY B 231 N THR B 195 SHEET 4 AA6 6 VAL B 149 SER B 154 1 N ILE B 151 O LEU B 230 SHEET 5 AA6 6 ASN B 157 LEU B 162 -1 O LEU B 159 N LEU B 152 SHEET 6 AA6 6 VAL B 174 LEU B 176 -1 O ARG B 175 N THR B 161 SHEET 1 AA7 6 LEU B 126 ASP B 127 0 SHEET 2 AA7 6 THR B 195 GLU B 202 -1 O VAL B 201 N ASP B 127 SHEET 3 AA7 6 ALA B 226 ILE B 232 -1 O GLY B 231 N THR B 195 SHEET 4 AA7 6 VAL B 149 SER B 154 1 N ILE B 151 O LEU B 230 SHEET 5 AA7 6 ASN B 157 LEU B 162 -1 O LEU B 159 N LEU B 152 SHEET 6 AA7 6 TYR B 248 PHE B 249 -1 O TYR B 248 N VAL B 160 SHEET 1 AA8 2 THR B 291 GLU B 294 0 SHEET 2 AA8 2 LYS B 299 CYS B 302 -1 O LEU B 301 N LYS B 292 SHEET 1 AA9 4 LEU B 353 PHE B 356 0 SHEET 2 AA9 4 PRO B 323 ILE B 330 -1 N VAL B 325 O GLY B 355 SHEET 3 AA9 4 LEU B 396 ALA B 404 1 O ALA B 404 N ILE B 330 SHEET 4 AA9 4 VAL B 379 PRO B 389 -1 N VAL B 385 O GLY B 399 SHEET 1 AB1 4 LEU B 353 PHE B 356 0 SHEET 2 AB1 4 PRO B 323 ILE B 330 -1 N VAL B 325 O GLY B 355 SHEET 3 AB1 4 LYS B 336 ARG B 341 -1 O LEU B 338 N VAL B 329 SHEET 4 AB1 4 ASP B 418 THR B 423 -1 O PHE B 422 N CYS B 337 SHEET 1 AB2 6 LEU C 126 ASP C 127 0 SHEET 2 AB2 6 THR C 195 GLU C 202 -1 O VAL C 201 N ASP C 127 SHEET 3 AB2 6 ALA C 226 ILE C 232 -1 O GLY C 231 N THR C 195 SHEET 4 AB2 6 VAL C 149 SER C 154 1 N ILE C 151 O LEU C 230 SHEET 5 AB2 6 ASN C 157 THR C 161 -1 O LEU C 159 N LEU C 152 SHEET 6 AB2 6 ARG C 175 LEU C 176 -1 O ARG C 175 N THR C 161 SHEET 1 AB3 6 LEU C 126 ASP C 127 0 SHEET 2 AB3 6 THR C 195 GLU C 202 -1 O VAL C 201 N ASP C 127 SHEET 3 AB3 6 ALA C 226 ILE C 232 -1 O GLY C 231 N THR C 195 SHEET 4 AB3 6 VAL C 149 SER C 154 1 N ILE C 151 O LEU C 230 SHEET 5 AB3 6 ASN C 157 THR C 161 -1 O LEU C 159 N LEU C 152 SHEET 6 AB3 6 TYR C 248 PHE C 249 -1 O TYR C 248 N VAL C 160 SHEET 1 AB4 2 THR C 291 GLU C 294 0 SHEET 2 AB4 2 LYS C 299 CYS C 302 -1 O LEU C 301 N LYS C 292 SHEET 1 AB5 4 LEU C 353 PHE C 356 0 SHEET 2 AB5 4 PRO C 323 ILE C 330 -1 N VAL C 325 O GLY C 355 SHEET 3 AB5 4 LEU C 396 ALA C 404 1 O ALA C 402 N ILE C 330 SHEET 4 AB5 4 VAL C 379 PRO C 389 -1 N GLN C 383 O LEU C 401 SHEET 1 AB6 4 LEU C 353 PHE C 356 0 SHEET 2 AB6 4 PRO C 323 ILE C 330 -1 N VAL C 325 O GLY C 355 SHEET 3 AB6 4 LYS C 336 ARG C 341 -1 O LEU C 338 N VAL C 329 SHEET 4 AB6 4 ASP C 418 THR C 423 -1 O PHE C 422 N CYS C 337 SSBOND 1 CYS A 117 CYS A 387 1555 1555 2.03 SSBOND 2 CYS A 177 CYS A 247 1555 1555 2.04 SSBOND 3 CYS B 117 CYS B 387 1555 1555 2.03 SSBOND 4 CYS B 177 CYS B 247 1555 1555 2.04 SSBOND 5 CYS C 117 CYS C 387 1555 1555 2.03 SSBOND 6 CYS C 177 CYS C 247 1555 1555 2.04 LINK NE2 HIS A 251 CD CD A 504 1555 1555 1.91 LINK SG CYS A 284 CD CD A 501 1555 1555 2.32 LINK SG CYS A 287 CD CD A 501 1555 1555 2.34 LINK SG CYS A 302 CD CD A 501 1555 1555 2.45 LINK SG CYS A 307 CD CD A 501 1555 1555 2.27 LINK OE2 GLU A 374 CD CD A 502 1555 1555 2.63 LINK CD CD A 504 NE2 HIS C 251 1555 1555 2.06 LINK NE2 HIS B 251 CD CD B 503 1555 1555 1.98 LINK SG CYS B 284 CD CD B 501 1555 1555 2.39 LINK SG CYS B 287 CD CD B 501 1555 1555 2.52 LINK SG CYS B 302 CD CD B 501 1555 1555 2.33 LINK SG CYS B 307 CD CD B 501 1555 1555 2.15 LINK CD CD B 502 O2AAMGP B 504 1555 1555 2.66 LINK SG CYS C 284 CD CD C 501 1555 1555 2.53 LINK SG CYS C 287 CD CD C 501 1555 1555 2.37 LINK SG CYS C 302 CD CD C 501 1555 1555 2.38 LINK SG CYS C 307 CD CD C 501 1555 1555 2.16 CISPEP 1 HIS A 251 PRO A 252 0 0.79 CISPEP 2 MET A 254 PRO A 255 0 -1.97 CISPEP 3 MET A 392 PRO A 393 0 -2.04 CISPEP 4 HIS B 251 PRO B 252 0 0.96 CISPEP 5 MET B 254 PRO B 255 0 2.11 CISPEP 6 MET B 392 PRO B 393 0 -1.94 CISPEP 7 HIS C 251 PRO C 252 0 1.90 CISPEP 8 MET C 254 PRO C 255 0 3.64 CISPEP 9 MET C 392 PRO C 393 0 -3.20 SITE 1 AC1 4 CYS A 284 CYS A 287 CYS A 302 CYS A 307 SITE 1 AC2 3 ALA A 354 GLU A 374 MGP A 505 SITE 1 AC3 2 GLU A 370 GLU A 415 SITE 1 AC4 2 HIS A 251 HIS C 251 SITE 1 AC5 18 ASP A 322 VAL A 324 ILE A 326 GLN A 342 SITE 2 AC5 18 ARG A 344 THR A 351 CYS A 352 ALA A 354 SITE 3 AC5 18 GLY A 355 PHE A 356 TRP A 390 MET A 397 SITE 4 AC5 18 ALA A 448 CD A 502 HOH A 601 VAL B 313 SITE 5 AC5 18 ASN B 315 TYR B 318 SITE 1 AC6 4 CYS B 284 CYS B 287 CYS B 302 CYS B 307 SITE 1 AC7 3 ALA B 354 GLU B 374 MGP B 504 SITE 1 AC8 1 HIS B 251 SITE 1 AC9 16 VAL A 313 ASN A 315 TYR A 318 VAL B 324 SITE 2 AC9 16 ILE B 326 ARG B 344 THR B 351 CYS B 352 SITE 3 AC9 16 ALA B 354 GLY B 355 PHE B 356 TRP B 390 SITE 4 AC9 16 MET B 397 ALA B 448 CD B 502 HOH B 601 SITE 1 AD1 4 CYS C 284 CYS C 287 CYS C 302 CYS C 307 SITE 1 AD2 3 ALA C 354 GLU C 374 MGP C 503 SITE 1 AD3 16 VAL C 313 ASN C 315 TYR C 318 VAL C 324 SITE 2 AD3 16 ILE C 326 ARG C 344 THR C 351 CYS C 352 SITE 3 AD3 16 ALA C 354 GLY C 355 PHE C 356 TRP C 390 SITE 4 AD3 16 MET C 397 ALA C 448 CD C 502 HOH C 601 CRYST1 229.859 229.859 159.012 90.00 90.00 120.00 H 3 2 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004350 0.002512 0.000000 0.00000 SCALE2 0.000000 0.005024 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006289 0.00000