HEADER TRANSFERASE 29-JUL-19 6SDN TITLE TRYPANOSOMA CRUZI FARNESYL DIPHOSPHATE SYNTHASE IN COMPLEX WITH TITLE 2 FRAGMENT J82 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FARNESYL DIPHOSPHATE SYNTHASE (FDPS), FARNESYL PYROPHOSPHATE SYNTHASE KEYWDS 2 (FPPS), TRYPANOSOMA CRUZI, COMPLEX WITH FRAGMENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.MAGARI,A.HEINE,G.KLEBE REVDAT 2 24-JAN-24 6SDN 1 REMARK REVDAT 1 26-AUG-20 6SDN 0 JRNL AUTH F.MAGARI,A.HEINE,G.KLEBE JRNL TITL TRYPANOSOMA CRUZI FARNESYL DIPHOSPHATE SYNTHASE IN COMPLEX JRNL TITL 2 WITH FRAGMENT J82 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 64355 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.162 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4800 - 4.2900 1.00 3059 162 0.1862 0.2501 REMARK 3 2 4.2900 - 3.4100 1.00 2796 147 0.1624 0.1852 REMARK 3 3 3.4100 - 2.9800 1.00 2759 145 0.1713 0.1774 REMARK 3 4 2.9800 - 2.7000 1.00 2720 143 0.1682 0.1825 REMARK 3 5 2.7000 - 2.5100 1.00 2680 141 0.1516 0.1848 REMARK 3 6 2.5100 - 2.3600 1.00 2700 142 0.1464 0.1642 REMARK 3 7 2.3600 - 2.2400 1.00 2641 139 0.1452 0.1653 REMARK 3 8 2.2400 - 2.1500 1.00 2652 140 0.1441 0.1748 REMARK 3 9 2.1500 - 2.0600 1.00 2661 140 0.1495 0.1728 REMARK 3 10 2.0600 - 1.9900 1.00 2606 137 0.1562 0.1986 REMARK 3 11 1.9900 - 1.9300 1.00 2633 139 0.1567 0.1779 REMARK 3 12 1.9300 - 1.8700 1.00 2634 138 0.1548 0.1670 REMARK 3 13 1.8700 - 1.8300 1.00 2627 139 0.1587 0.1843 REMARK 3 14 1.8300 - 1.7800 1.00 2634 138 0.1528 0.1745 REMARK 3 15 1.7800 - 1.7400 1.00 2601 137 0.1520 0.1857 REMARK 3 16 1.7400 - 1.7000 1.00 2554 134 0.1520 0.1817 REMARK 3 17 1.7000 - 1.6700 1.00 2635 139 0.1507 0.1923 REMARK 3 18 1.6700 - 1.6400 1.00 2628 138 0.1475 0.1844 REMARK 3 19 1.6400 - 1.6100 1.00 2567 136 0.1566 0.1598 REMARK 3 20 1.6100 - 1.5800 1.00 2606 137 0.1619 0.2244 REMARK 3 21 1.5800 - 1.5600 1.00 2605 137 0.1773 0.2024 REMARK 3 22 1.5600 - 1.5300 1.00 2551 134 0.1805 0.1994 REMARK 3 23 1.5300 - 1.5100 0.98 2588 136 0.1976 0.2299 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.117 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.603 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2969 REMARK 3 ANGLE : 0.885 4052 REMARK 3 CHIRALITY : 0.054 455 REMARK 3 PLANARITY : 0.007 531 REMARK 3 DIHEDRAL : 15.076 1767 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9511 -15.1996 -34.6534 REMARK 3 T TENSOR REMARK 3 T11: 0.0796 T22: 0.0895 REMARK 3 T33: 0.1164 T12: 0.0242 REMARK 3 T13: 0.0097 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.0588 L22: 0.1399 REMARK 3 L33: 0.1951 L12: 0.0452 REMARK 3 L13: 0.0057 L23: 0.1187 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.0048 S13: 0.0957 REMARK 3 S21: -0.0149 S22: -0.0121 S23: 0.0027 REMARK 3 S31: -0.0566 S32: -0.0164 S33: -0.0149 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3670 -26.6078 -18.4613 REMARK 3 T TENSOR REMARK 3 T11: 0.0946 T22: 0.1542 REMARK 3 T33: 0.1116 T12: 0.0219 REMARK 3 T13: 0.0080 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.2690 L22: 0.1437 REMARK 3 L33: 0.2384 L12: 0.0209 REMARK 3 L13: 0.0966 L23: -0.0144 REMARK 3 S TENSOR REMARK 3 S11: -0.0019 S12: -0.1347 S13: -0.0211 REMARK 3 S21: 0.0171 S22: -0.0122 S23: 0.0171 REMARK 3 S31: 0.0175 S32: 0.0041 S33: 0.0014 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2339 -14.4275 -7.1595 REMARK 3 T TENSOR REMARK 3 T11: 0.1493 T22: 0.2004 REMARK 3 T33: 0.1601 T12: 0.0125 REMARK 3 T13: -0.0076 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.4671 L22: 0.2272 REMARK 3 L33: 0.8559 L12: 0.2358 REMARK 3 L13: -0.3040 L23: -0.0282 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: -0.1290 S13: 0.2467 REMARK 3 S21: 0.0092 S22: 0.0426 S23: 0.0264 REMARK 3 S31: -0.1428 S32: 0.0135 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7819 -14.9169 -32.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.1041 REMARK 3 T33: 0.1108 T12: 0.0138 REMARK 3 T13: 0.0089 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 0.6578 L22: 0.2106 REMARK 3 L33: 0.3904 L12: -0.0146 REMARK 3 L13: 0.2011 L23: 0.0981 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: 0.0405 S13: 0.0770 REMARK 3 S21: -0.0158 S22: 0.0014 S23: -0.0324 REMARK 3 S31: -0.0369 S32: 0.0597 S33: -0.0125 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SDN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64357 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 48.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 17.5500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49400 REMARK 200 FOR SHELL : 3.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YHL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4MM ZNSO4+ 8 MM MES PH:6.50, 12.36% REMARK 280 PEG MME 550, 11.57% GLYCEROL. CRYSTAL OBTAINED BY MICROSEEDING: REMARK 280 160MM (NH4)2SO4, 80MM NAOAC PH:5.00, 20% PEG 4000, 20% GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 132.56567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 265.13133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 198.84850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 331.41417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.28283 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 132.56567 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 265.13133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 331.41417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 198.84850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 66.28283 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -195.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -29.01250 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -50.25112 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -66.28283 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 799 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 361 REMARK 465 LYS A 362 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CE NZ REMARK 470 LYS A 48 CE NZ REMARK 470 GLN A 67 OE1 NE2 REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 110 CD CE NZ REMARK 470 ASP A 145 OD1 OD2 REMARK 470 LYS A 158 NZ REMARK 470 LYS A 179 CE NZ REMARK 470 LYS A 201 CE NZ REMARK 470 SER A 229 OG REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 GLN A 261 CD OE1 NE2 REMARK 470 LYS A 284 CD CE NZ REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 314 CD CE NZ REMARK 470 GLN A 318 CG CD OE1 NE2 REMARK 470 LYS A 342 NZ REMARK 470 GLU A 355 CD OE1 OE2 REMARK 470 LYS A 356 CE NZ REMARK 470 LYS A 359 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 3 OE2 GLU A 60 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 119 -73.67 -105.36 REMARK 500 THR A 120 160.31 72.53 REMARK 500 ASP A 181 111.87 -173.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD1 REMARK 620 2 ASP A 98 OD2 54.7 REMARK 620 3 ASP A 102 OD2 94.5 78.7 REMARK 620 4 HOH A 523 O 92.4 104.5 173.0 REMARK 620 5 HOH A 525 O 99.9 152.3 94.0 86.0 REMARK 620 6 HOH A 642 O 148.4 95.1 87.2 86.2 111.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 250 OD2 REMARK 620 2 HOH A 520 O 86.5 REMARK 620 3 HOH A 557 O 98.9 104.6 REMARK 620 4 HOH A 630 O 174.5 89.7 86.0 REMARK 620 5 HOH A 673 O 86.5 95.7 159.2 89.9 REMARK 620 6 HOH A 737 O 99.9 164.3 88.6 82.7 70.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4NC A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 DBREF 6SDN A 1 362 UNP Q8WS26 Q8WS26_TRYCR 64 425 SEQRES 1 A 362 MET ALA SER MET GLU ARG PHE LEU SER VAL TYR ASP GLU SEQRES 2 A 362 VAL GLN ALA PHE LEU LEU ASP GLN LEU GLN SER LYS TYR SEQRES 3 A 362 GLU ILE ASP PRO ASN ARG ALA ARG TYR LEU ARG ILE MET SEQRES 4 A 362 MET ASP THR THR CYS LEU GLY GLY LYS TYR PHE ARG GLY SEQRES 5 A 362 MET THR VAL VAL ASN VAL ALA GLU GLY PHE LEU ALA VAL SEQRES 6 A 362 THR GLN HIS ASP GLU ALA THR LYS GLU ARG ILE LEU HIS SEQRES 7 A 362 ASP ALA CYS VAL GLY GLY TRP MET ILE GLU PHE LEU GLN SEQRES 8 A 362 ALA HIS TYR LEU VAL GLU ASP ASP ILE MET ASP GLY SER SEQRES 9 A 362 VAL MET ARG ARG GLY LYS PRO CYS TRP TYR ARG PHE PRO SEQRES 10 A 362 GLY VAL THR THR GLN CYS ALA ILE ASN ASP GLY ILE ILE SEQRES 11 A 362 LEU LYS SER TRP THR GLN ILE MET ALA TRP HIS TYR PHE SEQRES 12 A 362 ALA ASP ARG PRO PHE LEU LYS ASP LEU LEU CYS LEU PHE SEQRES 13 A 362 GLN LYS VAL ASP TYR ALA THR ALA VAL GLY GLN MET TYR SEQRES 14 A 362 ASP VAL THR SER MET CYS ASP SER ASN LYS LEU ASP PRO SEQRES 15 A 362 GLU VAL ALA GLN PRO MET THR THR ASP PHE ALA GLU PHE SEQRES 16 A 362 THR PRO ALA ILE TYR LYS ARG ILE VAL LYS TYR LYS THR SEQRES 17 A 362 THR PHE TYR THR TYR LEU LEU PRO LEU VAL MET GLY LEU SEQRES 18 A 362 LEU VAL SER GLU ALA ALA ALA SER VAL GLU MET ASN LEU SEQRES 19 A 362 VAL GLU ARG VAL ALA HIS LEU ILE GLY GLU TYR PHE GLN SEQRES 20 A 362 VAL GLN ASP ASP VAL MET ASP CYS PHE THR PRO PRO GLU SEQRES 21 A 362 GLN LEU GLY LYS VAL GLY THR ASP ILE GLU ASP ALA LYS SEQRES 22 A 362 CYS SER TRP LEU ALA VAL THR PHE LEU GLY LYS ALA ASN SEQRES 23 A 362 ALA ALA GLN VAL ALA GLU PHE LYS ALA ASN TYR GLY GLU SEQRES 24 A 362 LYS ASP PRO ALA LYS VAL ALA VAL VAL LYS ARG LEU TYR SEQRES 25 A 362 SER LYS ALA ASN LEU GLN ALA ASP PHE ALA ALA TYR GLU SEQRES 26 A 362 ALA GLU VAL VAL ARG GLU VAL GLU SER LEU ILE GLU GLN SEQRES 27 A 362 LEU LYS VAL LYS SER PRO THR PHE ALA GLU SER VAL ALA SEQRES 28 A 362 VAL VAL TRP GLU LYS THR HIS LYS ARG LYS LYS HET ZN A 401 1 HET ZN A 402 1 HET 4NC A 403 11 HET SO4 A 404 5 HETNAM ZN ZINC ION HETNAM 4NC 4-NITROCATECHOL HETNAM SO4 SULFATE ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 4NC C6 H5 N O4 FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *313(H2 O) HELIX 1 AA1 ALA A 2 TYR A 26 1 25 HELIX 2 AA2 ASP A 29 LEU A 45 1 17 HELIX 3 AA3 TYR A 49 ALA A 64 1 16 HELIX 4 AA4 ASP A 69 GLY A 103 1 35 HELIX 5 AA5 TRP A 113 PHE A 116 5 4 HELIX 6 AA6 VAL A 119 PHE A 143 1 25 HELIX 7 AA7 PHE A 148 THR A 172 1 25 HELIX 8 AA8 ASP A 176 LEU A 180 5 5 HELIX 9 AA9 THR A 196 THR A 208 1 13 HELIX 10 AB1 THR A 208 TYR A 213 1 6 HELIX 11 AB2 TYR A 213 SER A 224 1 12 HELIX 12 AB3 ALA A 226 VAL A 230 5 5 HELIX 13 AB4 GLU A 231 THR A 257 1 27 HELIX 14 AB5 PRO A 258 GLY A 263 1 6 HELIX 15 AB6 SER A 275 ALA A 285 1 11 HELIX 16 AB7 ASN A 286 TYR A 297 1 12 HELIX 17 AB8 ASP A 301 ALA A 315 1 15 HELIX 18 AB9 ASN A 316 LYS A 340 1 25 HELIX 19 AC1 SER A 343 LYS A 359 1 17 SHEET 1 AA1 2 MET A 106 ARG A 107 0 SHEET 2 AA1 2 LYS A 110 PRO A 111 -1 O LYS A 110 N ARG A 107 LINK OD1 ASP A 98 ZN ZN A 401 1555 1555 2.04 LINK OD2 ASP A 98 ZN ZN A 401 1555 1555 2.61 LINK OD2 ASP A 102 ZN ZN A 401 1555 1555 2.04 LINK OD2AASP A 250 ZN ZN A 402 1555 1555 2.07 LINK ZN ZN A 401 O HOH A 523 1555 1555 2.21 LINK ZN ZN A 401 O HOH A 525 1555 1555 1.79 LINK ZN ZN A 401 O HOH A 642 1555 1555 2.02 LINK ZN ZN A 402 O HOH A 520 1555 1555 1.95 LINK ZN ZN A 402 O HOH A 557 1555 1555 2.16 LINK ZN ZN A 402 O HOH A 630 1555 1555 2.28 LINK ZN ZN A 402 O AHOH A 673 1555 1555 2.08 LINK ZN ZN A 402 O HOH A 737 1555 1555 2.11 SITE 1 AC1 5 ASP A 98 ASP A 102 HOH A 523 HOH A 525 SITE 2 AC1 5 HOH A 642 SITE 1 AC2 6 ASP A 250 HOH A 520 HOH A 557 HOH A 630 SITE 2 AC2 6 HOH A 673 HOH A 737 SITE 1 AC3 9 PHE A 50 THR A 54 THR A 212 TYR A 213 SITE 2 AC3 9 PHE A 246 VAL A 353 LYS A 356 THR A 357 SITE 3 AC3 9 ARG A 360 SITE 1 AC4 11 GLY A 47 LYS A 48 TYR A 49 PHE A 50 SITE 2 AC4 11 ARG A 51 GLN A 91 HOH A 553 HOH A 578 SITE 3 AC4 11 HOH A 590 HOH A 600 HOH A 629 CRYST1 58.025 58.025 397.697 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017234 0.009950 0.000000 0.00000 SCALE2 0.000000 0.019900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002514 0.00000