HEADER TRANSFERASE 29-JUL-19 6SDP TITLE TRYPANOSOMA CRUZI FARNESYL DIPHOSPHATE SYNTHASE IN COMPLEX WITH TITLE 2 FRAGMENT 4NP COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FARNESYL DIPHOSPHATE SYNTHASE (FDPS), FARNESYL PYROPHOSPHATE SYNTHASE KEYWDS 2 (FPPS), TRYPANOSOMA CRUZI, COMPLEX WITH FRAGMENT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.MAGARI,A.HEINE,G.KLEBE REVDAT 2 24-JAN-24 6SDP 1 REMARK REVDAT 1 26-AUG-20 6SDP 0 JRNL AUTH F.MAGARI,A.HEINE,G.KLEBE JRNL TITL TRYPANOSOMA CRUZI FARNESYL DIPHOSPHATE SYNTHASE IN COMPLEX JRNL TITL 2 WITH FRAGMENT 4NP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 71864 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3593 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7200 - 4.3000 1.00 3038 159 0.1921 0.2048 REMARK 3 2 4.3000 - 3.4100 1.00 2765 146 0.1547 0.2076 REMARK 3 3 3.4100 - 2.9800 1.00 2739 144 0.1709 0.1977 REMARK 3 4 2.9800 - 2.7100 1.00 2694 142 0.1612 0.1478 REMARK 3 5 2.7100 - 2.5100 1.00 2649 139 0.1546 0.1940 REMARK 3 6 2.5100 - 2.3600 1.00 2684 142 0.1532 0.1667 REMARK 3 7 2.3600 - 2.2500 1.00 2624 138 0.1489 0.1690 REMARK 3 8 2.2500 - 2.1500 1.00 2622 138 0.1520 0.1904 REMARK 3 9 2.1500 - 2.0700 1.00 2608 137 0.1578 0.1859 REMARK 3 10 2.0700 - 1.9900 1.00 2634 139 0.1627 0.1796 REMARK 3 11 1.9900 - 1.9300 1.00 2573 135 0.1644 0.1596 REMARK 3 12 1.9300 - 1.8800 1.00 2651 140 0.1645 0.1682 REMARK 3 13 1.8800 - 1.8300 1.00 2592 136 0.1665 0.1968 REMARK 3 14 1.8300 - 1.7800 1.00 2595 137 0.1692 0.1609 REMARK 3 15 1.7800 - 1.7400 1.00 2572 135 0.1709 0.1964 REMARK 3 16 1.7400 - 1.7100 1.00 2561 135 0.1730 0.2007 REMARK 3 17 1.7100 - 1.6700 1.00 2601 137 0.1703 0.1944 REMARK 3 18 1.6700 - 1.6400 1.00 2585 136 0.1615 0.1631 REMARK 3 19 1.6400 - 1.6100 1.00 2545 134 0.1684 0.1997 REMARK 3 20 1.6100 - 1.5800 1.00 2611 137 0.1718 0.1869 REMARK 3 21 1.5800 - 1.5600 1.00 2534 133 0.1731 0.1501 REMARK 3 22 1.5600 - 1.5300 1.00 2568 136 0.1757 0.2129 REMARK 3 23 1.5300 - 1.5100 1.00 2585 136 0.1821 0.2261 REMARK 3 24 1.5100 - 1.4900 1.00 2539 133 0.1915 0.2226 REMARK 3 25 1.4900 - 1.4700 1.00 2571 136 0.1959 0.2140 REMARK 3 26 1.4700 - 1.4500 1.00 2531 133 0.2237 0.2314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.123 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2963 REMARK 3 ANGLE : 0.920 4038 REMARK 3 CHIRALITY : 0.070 451 REMARK 3 PLANARITY : 0.007 530 REMARK 3 DIHEDRAL : 18.210 1062 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2254 -13.1500 -38.1759 REMARK 3 T TENSOR REMARK 3 T11: 0.1477 T22: 0.1837 REMARK 3 T33: 0.1795 T12: -0.0028 REMARK 3 T13: 0.0023 T23: 0.0276 REMARK 3 L TENSOR REMARK 3 L11: 0.4419 L22: 0.2985 REMARK 3 L33: 0.2809 L12: 0.0795 REMARK 3 L13: -0.2956 L23: -0.2504 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: 0.2549 S13: 0.0630 REMARK 3 S21: -0.0696 S22: 0.0436 S23: -0.1848 REMARK 3 S31: -0.1362 S32: 0.3274 S33: -0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5685 -15.9210 -30.7233 REMARK 3 T TENSOR REMARK 3 T11: 0.1186 T22: 0.1376 REMARK 3 T33: 0.1611 T12: 0.0068 REMARK 3 T13: 0.0064 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.7473 L22: 0.3068 REMARK 3 L33: 0.4366 L12: 0.0608 REMARK 3 L13: -0.0121 L23: 0.0790 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: -0.0126 S13: 0.0697 REMARK 3 S21: -0.0089 S22: 0.0076 S23: -0.0286 REMARK 3 S31: -0.0254 S32: 0.0342 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6854 -21.0472 -30.8882 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: 0.1291 REMARK 3 T33: 0.1561 T12: 0.0087 REMARK 3 T13: 0.0125 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.4633 L22: 0.4626 REMARK 3 L33: 0.7387 L12: -0.1480 REMARK 3 L13: 0.2064 L23: -0.0020 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: -0.0066 S13: 0.0471 REMARK 3 S21: -0.0024 S22: -0.0098 S23: 0.0009 REMARK 3 S31: -0.0286 S32: -0.0207 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2309 -26.0407 -14.9227 REMARK 3 T TENSOR REMARK 3 T11: 0.1634 T22: 0.1944 REMARK 3 T33: 0.1504 T12: 0.0137 REMARK 3 T13: 0.0083 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.1702 L22: 0.2318 REMARK 3 L33: 0.4054 L12: -0.0399 REMARK 3 L13: -0.0675 L23: 0.0122 REMARK 3 S TENSOR REMARK 3 S11: 0.0159 S12: -0.0412 S13: -0.0085 REMARK 3 S21: 0.0266 S22: -0.0229 S23: 0.0285 REMARK 3 S31: 0.0135 S32: -0.0452 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.2449 -18.1474 -10.2260 REMARK 3 T TENSOR REMARK 3 T11: 0.2225 T22: 0.2437 REMARK 3 T33: 0.2052 T12: 0.0024 REMARK 3 T13: -0.0024 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 0.2671 L22: 0.1838 REMARK 3 L33: 0.3243 L12: 0.2315 REMARK 3 L13: 0.0567 L23: 0.0521 REMARK 3 S TENSOR REMARK 3 S11: 0.1126 S12: -0.0927 S13: 0.0605 REMARK 3 S21: -0.0503 S22: -0.0057 S23: 0.0687 REMARK 3 S31: 0.0101 S32: -0.0514 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.4092 -12.3665 -8.3437 REMARK 3 T TENSOR REMARK 3 T11: 0.2246 T22: 0.2819 REMARK 3 T33: 0.2458 T12: 0.0341 REMARK 3 T13: 0.0128 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 0.2768 L22: 0.2825 REMARK 3 L33: 0.2166 L12: 0.3153 REMARK 3 L13: 0.1965 L23: 0.1269 REMARK 3 S TENSOR REMARK 3 S11: -0.0796 S12: 0.0714 S13: 0.2095 REMARK 3 S21: 0.0632 S22: 0.1151 S23: 0.1781 REMARK 3 S31: -0.2971 S32: -0.0651 S33: -0.0008 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0450 -14.5987 -4.9750 REMARK 3 T TENSOR REMARK 3 T11: 0.1987 T22: 0.2379 REMARK 3 T33: 0.1801 T12: 0.0027 REMARK 3 T13: 0.0121 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 0.7866 L22: 0.4932 REMARK 3 L33: 0.7145 L12: 0.2563 REMARK 3 L13: 0.1538 L23: -0.1981 REMARK 3 S TENSOR REMARK 3 S11: 0.0612 S12: -0.4267 S13: 0.3065 REMARK 3 S21: 0.0197 S22: 0.0273 S23: -0.0156 REMARK 3 S31: -0.2140 S32: 0.1444 S33: 0.0328 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103527. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71867 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 397.732 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 26.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48500 REMARK 200 FOR SHELL : 4.540 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YHL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4MM ZNSO4+ 8 MM MES PH:6.50, 12.36% REMARK 280 PEG MME 550, 11.57% GLYCEROL. CRYSTAL OBTAINED BY MICROSEEDING: REMARK 280 160MM (NH4)2SO4, 80MM NAOAC PH:5.00, 20% PEG 4000, 20% GLYCEROL., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 132.57733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 265.15467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 198.86600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 331.44333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.28867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 132.57733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 265.15467 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 331.44333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 198.86600 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 66.28867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -185.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -28.93200 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -50.11169 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -66.28867 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 757 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CE NZ REMARK 470 LYS A 48 NZ REMARK 470 MET A 106 CE REMARK 470 LYS A 110 CD CE NZ REMARK 470 ASP A 145 CG OD1 OD2 REMARK 470 LYS A 179 CD CE NZ REMARK 470 LYS A 201 NZ REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 GLN A 261 CG CD OE1 NE2 REMARK 470 LYS A 264 CE NZ REMARK 470 VAL A 265 CG1 CG2 REMARK 470 LYS A 300 CD CE NZ REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 GLN A 318 OE1 NE2 REMARK 470 LYS A 342 CE NZ REMARK 470 LYS A 356 CE NZ REMARK 470 LYS A 359 CD CE NZ REMARK 470 LYS A 361 CG CD CE NZ REMARK 470 LYS A 362 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 3 OE2 GLU A 60 1.56 REMARK 500 OG SER A 3 OE2 GLU A 60 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 119 -74.63 -105.34 REMARK 500 THR A 120 161.42 73.65 REMARK 500 ASP A 181 114.70 -171.74 REMARK 500 THR A 208 -52.94 -124.02 REMARK 500 THR A 208 -37.03 -135.81 REMARK 500 SER A 343 77.73 -153.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 761 DISTANCE = 5.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD1 REMARK 620 2 ASP A 98 OD2 56.4 REMARK 620 3 ASP A 102 OD2 97.5 77.6 REMARK 620 4 HOH A 513 O 90.0 101.1 169.8 REMARK 620 5 HOH A 525 O 98.9 152.1 94.6 91.0 REMARK 620 6 HOH A 621 O 143.4 89.1 85.3 84.6 117.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 538 O REMARK 620 2 HOH A 550 O 85.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NPO A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6SDN RELATED DB: PDB REMARK 900 RELATED ID: 6SDO RELATED DB: PDB DBREF 6SDP A 1 362 UNP Q8WS26 Q8WS26_TRYCR 64 425 SEQRES 1 A 362 MET ALA SER MET GLU ARG PHE LEU SER VAL TYR ASP GLU SEQRES 2 A 362 VAL GLN ALA PHE LEU LEU ASP GLN LEU GLN SER LYS TYR SEQRES 3 A 362 GLU ILE ASP PRO ASN ARG ALA ARG TYR LEU ARG ILE MET SEQRES 4 A 362 MET ASP THR THR CYS LEU GLY GLY LYS TYR PHE ARG GLY SEQRES 5 A 362 MET THR VAL VAL ASN VAL ALA GLU GLY PHE LEU ALA VAL SEQRES 6 A 362 THR GLN HIS ASP GLU ALA THR LYS GLU ARG ILE LEU HIS SEQRES 7 A 362 ASP ALA CYS VAL GLY GLY TRP MET ILE GLU PHE LEU GLN SEQRES 8 A 362 ALA HIS TYR LEU VAL GLU ASP ASP ILE MET ASP GLY SER SEQRES 9 A 362 VAL MET ARG ARG GLY LYS PRO CYS TRP TYR ARG PHE PRO SEQRES 10 A 362 GLY VAL THR THR GLN CYS ALA ILE ASN ASP GLY ILE ILE SEQRES 11 A 362 LEU LYS SER TRP THR GLN ILE MET ALA TRP HIS TYR PHE SEQRES 12 A 362 ALA ASP ARG PRO PHE LEU LYS ASP LEU LEU CYS LEU PHE SEQRES 13 A 362 GLN LYS VAL ASP TYR ALA THR ALA VAL GLY GLN MET TYR SEQRES 14 A 362 ASP VAL THR SER MET CYS ASP SER ASN LYS LEU ASP PRO SEQRES 15 A 362 GLU VAL ALA GLN PRO MET THR THR ASP PHE ALA GLU PHE SEQRES 16 A 362 THR PRO ALA ILE TYR LYS ARG ILE VAL LYS TYR LYS THR SEQRES 17 A 362 THR PHE TYR THR TYR LEU LEU PRO LEU VAL MET GLY LEU SEQRES 18 A 362 LEU VAL SER GLU ALA ALA ALA SER VAL GLU MET ASN LEU SEQRES 19 A 362 VAL GLU ARG VAL ALA HIS LEU ILE GLY GLU TYR PHE GLN SEQRES 20 A 362 VAL GLN ASP ASP VAL MET ASP CYS PHE THR PRO PRO GLU SEQRES 21 A 362 GLN LEU GLY LYS VAL GLY THR ASP ILE GLU ASP ALA LYS SEQRES 22 A 362 CYS SER TRP LEU ALA VAL THR PHE LEU GLY LYS ALA ASN SEQRES 23 A 362 ALA ALA GLN VAL ALA GLU PHE LYS ALA ASN TYR GLY GLU SEQRES 24 A 362 LYS ASP PRO ALA LYS VAL ALA VAL VAL LYS ARG LEU TYR SEQRES 25 A 362 SER LYS ALA ASN LEU GLN ALA ASP PHE ALA ALA TYR GLU SEQRES 26 A 362 ALA GLU VAL VAL ARG GLU VAL GLU SER LEU ILE GLU GLN SEQRES 27 A 362 LEU LYS VAL LYS SER PRO THR PHE ALA GLU SER VAL ALA SEQRES 28 A 362 VAL VAL TRP GLU LYS THR HIS LYS ARG LYS LYS HET SO4 A 401 5 HET ZN A 402 1 HET ZN A 403 1 HET NPO A 404 10 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION HETNAM NPO P-NITROPHENOL FORMUL 2 SO4 O4 S 2- FORMUL 3 ZN 2(ZN 2+) FORMUL 5 NPO C6 H5 N O3 FORMUL 6 HOH *261(H2 O) HELIX 1 AA1 ALA A 2 TYR A 26 1 25 HELIX 2 AA2 ASP A 29 LEU A 45 1 17 HELIX 3 AA3 TYR A 49 ALA A 64 1 16 HELIX 4 AA4 ASP A 69 GLY A 103 1 35 HELIX 5 AA5 TRP A 113 PHE A 116 5 4 HELIX 6 AA6 VAL A 119 PHE A 143 1 25 HELIX 7 AA7 PHE A 148 THR A 172 1 25 HELIX 8 AA8 ASP A 176 LEU A 180 5 5 HELIX 9 AA9 THR A 196 THR A 208 1 13 HELIX 10 AB1 THR A 208 TYR A 213 1 6 HELIX 11 AB2 TYR A 213 SER A 224 1 12 HELIX 12 AB3 ALA A 226 VAL A 230 5 5 HELIX 13 AB4 GLU A 231 THR A 257 1 27 HELIX 14 AB5 PRO A 258 GLY A 263 1 6 HELIX 15 AB6 SER A 275 GLY A 283 1 9 HELIX 16 AB7 ASN A 286 TYR A 297 1 12 HELIX 17 AB8 ASP A 301 ALA A 315 1 15 HELIX 18 AB9 ASN A 316 LYS A 340 1 25 HELIX 19 AC1 SER A 343 ARG A 360 1 18 SHEET 1 AA1 2 MET A 106 ARG A 107 0 SHEET 2 AA1 2 LYS A 110 PRO A 111 -1 O LYS A 110 N ARG A 107 LINK OD1 ASP A 98 ZN ZN A 402 1555 1555 2.04 LINK OD2 ASP A 98 ZN ZN A 402 1555 1555 2.50 LINK OD2 ASP A 102 ZN ZN A 402 1555 1555 2.16 LINK ZN ZN A 402 O HOH A 513 1555 1555 2.17 LINK ZN ZN A 402 O HOH A 525 1555 1555 1.99 LINK ZN ZN A 402 O HOH A 621 1555 1555 1.97 LINK ZN ZN A 403 O HOH A 538 1555 1555 1.99 LINK ZN ZN A 403 O HOH A 550 1555 1555 2.41 SITE 1 AC1 9 GLY A 47 LYS A 48 TYR A 49 PHE A 50 SITE 2 AC1 9 ARG A 51 GLN A 91 HOH A 535 HOH A 552 SITE 3 AC1 9 HOH A 630 SITE 1 AC2 5 ASP A 98 ASP A 102 HOH A 513 HOH A 525 SITE 2 AC2 5 HOH A 621 SITE 1 AC3 2 HOH A 538 HOH A 550 SITE 1 AC4 8 PHE A 50 THR A 54 THR A 212 TYR A 213 SITE 2 AC4 8 PHE A 246 LYS A 356 THR A 357 ARG A 360 CRYST1 57.864 57.864 397.732 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017282 0.009978 0.000000 0.00000 SCALE2 0.000000 0.019955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002514 0.00000