HEADER TRANSFERASE 29-JUL-19 6SE2 TITLE TRYPANOSOMA CRUZI FARNESYL DIPHOSPHATE SYNTHASE APO STRUCTURE WITH TITLE 2 ZINC IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FARNESYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA CRUZI; SOURCE 3 ORGANISM_TAXID: 5693; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS FARNESYL DIPHOSPHATE SYNTHASE (FDPS), FARNESYL PYROPHOSPHATE SYNTHASE KEYWDS 2 (FPPS), TRYPANOSOMA CRUZI, APO STRUCTURE, ZINC IONS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.MAGARI,A.HEINE,G.KLEBE REVDAT 2 24-JAN-24 6SE2 1 REMARK REVDAT 1 26-AUG-20 6SE2 0 JRNL AUTH F.MAGARI,A.HEINE,G.KLEBE JRNL TITL TRYPANOSOMA CRUZI FARNESYL DIPHOSPHATE SYNTHASE APO JRNL TITL 2 STRUCTURE WITH ZINC IONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 71943 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7800 - 4.3000 1.00 3040 160 0.1947 0.1919 REMARK 3 2 4.3000 - 3.4100 1.00 2772 146 0.1635 0.1875 REMARK 3 3 3.4100 - 2.9800 1.00 2748 145 0.1761 0.2021 REMARK 3 4 2.9800 - 2.7100 1.00 2696 142 0.1733 0.1864 REMARK 3 5 2.7100 - 2.5100 1.00 2641 139 0.1596 0.1697 REMARK 3 6 2.5100 - 2.3600 1.00 2699 142 0.1516 0.1451 REMARK 3 7 2.3600 - 2.2500 1.00 2624 138 0.1436 0.1563 REMARK 3 8 2.2500 - 2.1500 1.00 2629 138 0.1559 0.1813 REMARK 3 9 2.1500 - 2.0700 1.00 2625 139 0.1563 0.1939 REMARK 3 10 2.0700 - 1.9900 1.00 2620 138 0.1642 0.2120 REMARK 3 11 1.9900 - 1.9300 1.00 2592 136 0.1690 0.1647 REMARK 3 12 1.9300 - 1.8800 1.00 2643 139 0.1659 0.2046 REMARK 3 13 1.8800 - 1.8300 1.00 2592 136 0.1674 0.1828 REMARK 3 14 1.8300 - 1.7800 1.00 2595 137 0.1628 0.1785 REMARK 3 15 1.7800 - 1.7400 1.00 2591 136 0.1666 0.1836 REMARK 3 16 1.7400 - 1.7100 1.00 2558 135 0.1680 0.1920 REMARK 3 17 1.7100 - 1.6700 1.00 2608 137 0.1718 0.1791 REMARK 3 18 1.6700 - 1.6400 1.00 2583 136 0.1668 0.2333 REMARK 3 19 1.6400 - 1.6100 1.00 2557 135 0.1699 0.2175 REMARK 3 20 1.6100 - 1.5800 1.00 2604 137 0.1760 0.2069 REMARK 3 21 1.5800 - 1.5600 1.00 2574 135 0.1716 0.1640 REMARK 3 22 1.5600 - 1.5300 1.00 2547 134 0.1774 0.2095 REMARK 3 23 1.5300 - 1.5100 1.00 2602 137 0.1719 0.1844 REMARK 3 24 1.5100 - 1.4900 1.00 2521 133 0.1790 0.2039 REMARK 3 25 1.4900 - 1.4700 1.00 2607 137 0.1866 0.2126 REMARK 3 26 1.4700 - 1.4500 0.99 2477 131 0.2102 0.2560 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.113 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.473 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2907 REMARK 3 ANGLE : 0.913 3968 REMARK 3 CHIRALITY : 0.070 449 REMARK 3 PLANARITY : 0.006 511 REMARK 3 DIHEDRAL : 19.124 1022 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7023 -14.7721 -33.0923 REMARK 3 T TENSOR REMARK 3 T11: 0.1033 T22: 0.1183 REMARK 3 T33: 0.1466 T12: 0.0142 REMARK 3 T13: 0.0136 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.5077 L22: 0.4837 REMARK 3 L33: 0.6266 L12: -0.1562 REMARK 3 L13: 0.3452 L23: 0.0909 REMARK 3 S TENSOR REMARK 3 S11: -0.0582 S12: 0.0404 S13: 0.1910 REMARK 3 S21: -0.0151 S22: -0.0110 S23: -0.0556 REMARK 3 S31: -0.0567 S32: 0.0623 S33: -0.0006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7146 -26.3687 -18.3876 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.2054 REMARK 3 T33: 0.1356 T12: 0.0281 REMARK 3 T13: 0.0063 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.3401 L22: 0.3831 REMARK 3 L33: 0.4177 L12: -0.0475 REMARK 3 L13: 0.1070 L23: -0.0257 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: -0.1712 S13: -0.0244 REMARK 3 S21: 0.0464 S22: -0.0100 S23: 0.0343 REMARK 3 S31: 0.0360 S32: -0.0229 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 232 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7012 -14.4657 -6.7614 REMARK 3 T TENSOR REMARK 3 T11: 0.2919 T22: 0.3494 REMARK 3 T33: 0.2963 T12: 0.0007 REMARK 3 T13: -0.0095 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 1.1105 L22: 0.0242 REMARK 3 L33: 0.8464 L12: 0.4693 REMARK 3 L13: -0.6792 L23: 0.1166 REMARK 3 S TENSOR REMARK 3 S11: 0.0210 S12: -0.1626 S13: 0.4083 REMARK 3 S21: -0.0068 S22: 0.0474 S23: 0.0682 REMARK 3 S31: -0.2347 S32: 0.0155 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71946 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 397.468 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 32.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47500 REMARK 200 FOR SHELL : 6.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YHL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4MM ZNSO4+ 8 MM MES PH:6.50, 12.36% REMARK 280 PEG MME 550, 11.57% GLYCEROL. CRYSTAL OBTAINED BY MICROSEEDING: REMARK 280 160MM (NH4)2SO4, 80MM NAOAC PH:5.00, 20% PEG 4000, 20% GLYCEROL., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 132.48933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 264.97867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 198.73400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 331.22333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 66.24467 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 132.48933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 264.97867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 331.22333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 198.73400 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 66.24467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -195.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 -28.96750 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 -50.17318 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -66.24467 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 768 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 361 REMARK 465 LYS A 362 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 CE NZ REMARK 470 LYS A 48 CD CE NZ REMARK 470 GLN A 67 CG CD OE1 NE2 REMARK 470 MET A 106 CE REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 ASP A 145 CG OD1 OD2 REMARK 470 LYS A 158 NZ REMARK 470 MET A 168 CE REMARK 470 LYS A 179 CD CE NZ REMARK 470 LYS A 201 CE NZ REMARK 470 GLU A 260 CG CD OE1 OE2 REMARK 470 GLN A 261 CG CD OE1 NE2 REMARK 470 LYS A 264 CD CE NZ REMARK 470 VAL A 265 CG1 CG2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 SER A 313 OG REMARK 470 LYS A 314 CG CD CE NZ REMARK 470 GLN A 318 CG CD OE1 NE2 REMARK 470 LYS A 342 CE NZ REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 LYS A 356 CE NZ REMARK 470 LYS A 359 CG CD CE NZ REMARK 470 ARG A 360 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 3 OE2 GLU A 60 1.56 REMARK 500 OG SER A 3 OE2 GLU A 60 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 119 -77.10 -103.94 REMARK 500 THR A 120 158.09 77.51 REMARK 500 ASP A 181 113.98 -170.95 REMARK 500 THR A 208 -32.60 -134.39 REMARK 500 THR A 208 -40.64 -130.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD1 REMARK 620 2 ASP A 98 OD2 54.2 REMARK 620 3 ASP A 102 OD2 93.9 77.2 REMARK 620 4 HOH A 515 O 99.9 150.8 93.4 REMARK 620 5 HOH A 542 O 90.4 103.5 175.1 88.2 REMARK 620 6 HOH A 571 O 144.3 91.6 86.8 115.7 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 250 OD2 REMARK 620 2 HOH A 505 O 62.5 REMARK 620 3 HOH A 513 O 100.9 48.1 REMARK 620 4 HOH A 522 O 85.7 77.1 108.2 REMARK 620 5 HOH A 597 O 85.2 145.3 162.3 88.8 REMARK 620 6 HOH A 660 O 171.9 122.9 86.9 89.7 88.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6SDN RELATED DB: PDB REMARK 900 6SDN REMARK 900 RELATED ID: 6SDO RELATED DB: PDB REMARK 900 6SDO REMARK 900 RELATED ID: 6SDP RELATED DB: PDB REMARK 900 6SDP REMARK 900 RELATED ID: 6SDQ RELATED DB: PDB REMARK 900 6SDQ DBREF 6SE2 A 1 362 UNP Q8WS26 Q8WS26_TRYCR 64 425 SEQRES 1 A 362 MET ALA SER MET GLU ARG PHE LEU SER VAL TYR ASP GLU SEQRES 2 A 362 VAL GLN ALA PHE LEU LEU ASP GLN LEU GLN SER LYS TYR SEQRES 3 A 362 GLU ILE ASP PRO ASN ARG ALA ARG TYR LEU ARG ILE MET SEQRES 4 A 362 MET ASP THR THR CYS LEU GLY GLY LYS TYR PHE ARG GLY SEQRES 5 A 362 MET THR VAL VAL ASN VAL ALA GLU GLY PHE LEU ALA VAL SEQRES 6 A 362 THR GLN HIS ASP GLU ALA THR LYS GLU ARG ILE LEU HIS SEQRES 7 A 362 ASP ALA CYS VAL GLY GLY TRP MET ILE GLU PHE LEU GLN SEQRES 8 A 362 ALA HIS TYR LEU VAL GLU ASP ASP ILE MET ASP GLY SER SEQRES 9 A 362 VAL MET ARG ARG GLY LYS PRO CYS TRP TYR ARG PHE PRO SEQRES 10 A 362 GLY VAL THR THR GLN CYS ALA ILE ASN ASP GLY ILE ILE SEQRES 11 A 362 LEU LYS SER TRP THR GLN ILE MET ALA TRP HIS TYR PHE SEQRES 12 A 362 ALA ASP ARG PRO PHE LEU LYS ASP LEU LEU CYS LEU PHE SEQRES 13 A 362 GLN LYS VAL ASP TYR ALA THR ALA VAL GLY GLN MET TYR SEQRES 14 A 362 ASP VAL THR SER MET CYS ASP SER ASN LYS LEU ASP PRO SEQRES 15 A 362 GLU VAL ALA GLN PRO MET THR THR ASP PHE ALA GLU PHE SEQRES 16 A 362 THR PRO ALA ILE TYR LYS ARG ILE VAL LYS TYR LYS THR SEQRES 17 A 362 THR PHE TYR THR TYR LEU LEU PRO LEU VAL MET GLY LEU SEQRES 18 A 362 LEU VAL SER GLU ALA ALA ALA SER VAL GLU MET ASN LEU SEQRES 19 A 362 VAL GLU ARG VAL ALA HIS LEU ILE GLY GLU TYR PHE GLN SEQRES 20 A 362 VAL GLN ASP ASP VAL MET ASP CYS PHE THR PRO PRO GLU SEQRES 21 A 362 GLN LEU GLY LYS VAL GLY THR ASP ILE GLU ASP ALA LYS SEQRES 22 A 362 CYS SER TRP LEU ALA VAL THR PHE LEU GLY LYS ALA ASN SEQRES 23 A 362 ALA ALA GLN VAL ALA GLU PHE LYS ALA ASN TYR GLY GLU SEQRES 24 A 362 LYS ASP PRO ALA LYS VAL ALA VAL VAL LYS ARG LEU TYR SEQRES 25 A 362 SER LYS ALA ASN LEU GLN ALA ASP PHE ALA ALA TYR GLU SEQRES 26 A 362 ALA GLU VAL VAL ARG GLU VAL GLU SER LEU ILE GLU GLN SEQRES 27 A 362 LEU LYS VAL LYS SER PRO THR PHE ALA GLU SER VAL ALA SEQRES 28 A 362 VAL VAL TRP GLU LYS THR HIS LYS ARG LYS LYS HET SO4 A 401 5 HET ZN A 402 1 HET ZN A 403 1 HETNAM SO4 SULFATE ION HETNAM ZN ZINC ION FORMUL 2 SO4 O4 S 2- FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *279(H2 O) HELIX 1 AA1 ALA A 2 TYR A 26 1 25 HELIX 2 AA2 ASP A 29 LEU A 45 1 17 HELIX 3 AA3 TYR A 49 ALA A 64 1 16 HELIX 4 AA4 ASP A 69 GLY A 103 1 35 HELIX 5 AA5 TRP A 113 PHE A 116 5 4 HELIX 6 AA6 VAL A 119 PHE A 143 1 25 HELIX 7 AA7 PHE A 148 THR A 172 1 25 HELIX 8 AA8 ASP A 176 LEU A 180 5 5 HELIX 9 AA9 THR A 196 THR A 208 1 13 HELIX 10 AB1 THR A 208 TYR A 213 1 6 HELIX 11 AB2 TYR A 213 SER A 224 1 12 HELIX 12 AB3 ALA A 226 VAL A 230 5 5 HELIX 13 AB4 GLU A 231 THR A 257 1 27 HELIX 14 AB5 PRO A 258 GLY A 263 1 6 HELIX 15 AB6 SER A 275 GLY A 283 1 9 HELIX 16 AB7 ASN A 286 TYR A 297 1 12 HELIX 17 AB8 ASP A 301 ALA A 315 1 15 HELIX 18 AB9 ASN A 316 LYS A 340 1 25 HELIX 19 AC1 SER A 343 LYS A 359 1 17 SHEET 1 AA1 2 MET A 106 ARG A 107 0 SHEET 2 AA1 2 LYS A 110 PRO A 111 -1 O LYS A 110 N ARG A 107 LINK OD1AASP A 98 ZN ZN A 402 1555 1555 2.03 LINK OD2AASP A 98 ZN ZN A 402 1555 1555 2.63 LINK OD2 ASP A 102 ZN ZN A 402 1555 1555 2.06 LINK OD2 ASP A 250 ZN ZN A 403 1555 1555 2.10 LINK ZN ZN A 402 O HOH A 515 1555 1555 1.98 LINK ZN ZN A 402 O HOH A 542 1555 1555 2.15 LINK ZN ZN A 402 O HOH A 571 1555 1555 1.89 LINK ZN ZN A 403 O BHOH A 505 1555 1555 2.48 LINK ZN ZN A 403 O HOH A 513 1555 1555 2.17 LINK ZN ZN A 403 O HOH A 522 1555 1555 2.02 LINK ZN ZN A 403 O HOH A 597 1555 1555 1.95 LINK ZN ZN A 403 O HOH A 660 1555 1555 2.21 SITE 1 AC1 10 GLY A 47 LYS A 48 TYR A 49 PHE A 50 SITE 2 AC1 10 ARG A 51 GLN A 91 HOH A 545 HOH A 555 SITE 3 AC1 10 HOH A 588 HOH A 619 SITE 1 AC2 5 ASP A 98 ASP A 102 HOH A 515 HOH A 542 SITE 2 AC2 5 HOH A 571 SITE 1 AC3 6 ASP A 250 HOH A 505 HOH A 513 HOH A 522 SITE 2 AC3 6 HOH A 597 HOH A 660 CRYST1 57.935 57.935 397.468 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017261 0.009965 0.000000 0.00000 SCALE2 0.000000 0.019931 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002516 0.00000