HEADER HYDROLASE 29-JUL-19 6SE9 TITLE COLD-ADAPTED BETA-D-GALACTOSIDASE FROM ARTHROBACTER SP. 32CB MUTANT TITLE 2 E441Q IN COMPLEX WITH LACTOSE BOUND IN SHALLOW MODE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GALACTOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.23; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARTHROBACTER SP. 32CB; SOURCE 3 ORGANISM_TAXID: 1492190; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GALACTOSIDASE, COLD-ADAPTED, PSYCHROPHILIC, DIMERIC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.RUTKIEWICZ,A.BUJACZ,G.BUJACZ REVDAT 4 24-JAN-24 6SE9 1 HETSYN REVDAT 3 29-JUL-20 6SE9 1 COMPND REMARK HET HETNAM REVDAT 3 2 1 FORMUL LINK SITE ATOM REVDAT 2 18-SEP-19 6SE9 1 JRNL REVDAT 1 11-SEP-19 6SE9 0 JRNL AUTH M.RUTKIEWICZ,A.BUJACZ,M.WANARSKA,A.WIERZBICKA-WOS, JRNL AUTH 2 H.CIESLINSKI JRNL TITL ACTIVE SITE ARCHITECTURE AND REACTION MECHANISM JRNL TITL 2 DETERMINATION OF COLD ADAPTED BETA-D-GALACTOSIDASE JRNL TITL 3 FROMARTHROBACTERSP. 32CB. JRNL REF INT J MOL SCI V. 20 2019 JRNL REFN ESSN 1422-0067 JRNL PMID 31484304 JRNL DOI 10.3390/IJMS20174301 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.RUTKIEWICZ,A.BUJACZ,G.BUJACZ REMARK 1 TITL STRUCTURAL FEATURES OF COLD-ADAPTED DIMERIC GH2 REMARK 1 TITL 2 BETA-D-GALACTOSIDASE FROM ARTHROBACTER SP. 32CB. REMARK 1 REF BIOCHIM BIOPHYS ACTA V.1867 776 2019 REMARK 1 REF 2 PROTEINS PROTEOM REMARK 1 REFN ISSN 1878-1454 REMARK 1 DOI 10.1016/J.BBAPAP.2019.06.001 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 100462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.0390 - 4.8437 1.00 6903 147 0.1600 0.2080 REMARK 3 2 4.8437 - 3.8452 1.00 6709 143 0.1317 0.1585 REMARK 3 3 3.8452 - 3.3593 1.00 6667 142 0.1740 0.2185 REMARK 3 4 3.3593 - 3.0522 1.00 6630 141 0.2078 0.2391 REMARK 3 5 3.0522 - 2.8334 1.00 6598 139 0.2345 0.2834 REMARK 3 6 2.8334 - 2.6664 0.99 6563 140 0.2292 0.2814 REMARK 3 7 2.6664 - 2.5329 1.00 6593 141 0.2371 0.2529 REMARK 3 8 2.5329 - 2.4226 0.99 6545 139 0.2416 0.2501 REMARK 3 9 2.4226 - 2.3294 0.99 6531 139 0.2588 0.2917 REMARK 3 10 2.3294 - 2.2490 0.99 6517 139 0.2723 0.2722 REMARK 3 11 2.2490 - 2.1787 0.99 6553 138 0.2974 0.3373 REMARK 3 12 2.1787 - 2.1164 0.99 6511 139 0.3301 0.3602 REMARK 3 13 2.1164 - 2.0607 0.99 6495 137 0.3693 0.4085 REMARK 3 14 2.0607 - 2.0104 0.99 6498 138 0.4061 0.4571 REMARK 3 15 2.0104 - 1.9650 0.92 6058 129 0.4592 0.4611 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 7894 REMARK 3 ANGLE : 0.602 10765 REMARK 3 CHIRALITY : 0.046 1156 REMARK 3 PLANARITY : 0.004 1437 REMARK 3 DIHEDRAL : 15.720 4598 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 567 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.6667 32.2089 34.8947 REMARK 3 T TENSOR REMARK 3 T11: 0.7964 T22: 0.4485 REMARK 3 T33: 0.4871 T12: 0.0893 REMARK 3 T13: 0.0496 T23: 0.0551 REMARK 3 L TENSOR REMARK 3 L11: 1.1594 L22: 0.5952 REMARK 3 L33: 2.1110 L12: -0.3023 REMARK 3 L13: -0.0184 L23: -0.0966 REMARK 3 S TENSOR REMARK 3 S11: -0.0748 S12: -0.1432 S13: -0.2423 REMARK 3 S21: 0.1910 S22: 0.1642 S23: 0.1274 REMARK 3 S31: 0.3555 S32: -0.1015 S33: -0.0910 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 568 THROUGH 701 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.3478 18.4124 12.3718 REMARK 3 T TENSOR REMARK 3 T11: 1.0342 T22: 0.6654 REMARK 3 T33: 0.5335 T12: 0.2876 REMARK 3 T13: -0.0272 T23: -0.0711 REMARK 3 L TENSOR REMARK 3 L11: 3.6718 L22: 0.9524 REMARK 3 L33: 1.1869 L12: -1.0518 REMARK 3 L13: -0.5064 L23: 0.1325 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: 0.2444 S13: -0.2299 REMARK 3 S21: 0.1351 S22: 0.0217 S23: -0.0168 REMARK 3 S31: 0.5757 S32: 0.4031 S33: 0.0413 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 702 THROUGH 780 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6381 22.0294 -15.1543 REMARK 3 T TENSOR REMARK 3 T11: 1.0253 T22: 0.8089 REMARK 3 T33: 0.5957 T12: 0.2299 REMARK 3 T13: -0.0866 T23: -0.1744 REMARK 3 L TENSOR REMARK 3 L11: 1.4274 L22: 0.1489 REMARK 3 L33: 3.3278 L12: -0.2613 REMARK 3 L13: 0.7667 L23: -0.3295 REMARK 3 S TENSOR REMARK 3 S11: 0.3758 S12: 0.4350 S13: -0.3077 REMARK 3 S21: -0.2007 S22: -0.1844 S23: 0.0908 REMARK 3 S31: 0.6565 S32: 0.3209 S33: -0.2118 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 781 THROUGH 1010 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6799 23.9266 -11.4907 REMARK 3 T TENSOR REMARK 3 T11: 0.8601 T22: 0.8006 REMARK 3 T33: 0.5631 T12: 0.1779 REMARK 3 T13: -0.0686 T23: -0.1745 REMARK 3 L TENSOR REMARK 3 L11: 1.2022 L22: 0.8452 REMARK 3 L33: 1.9950 L12: -0.3671 REMARK 3 L13: 0.4042 L23: -0.2974 REMARK 3 S TENSOR REMARK 3 S11: 0.2483 S12: 0.4755 S13: -0.3089 REMARK 3 S21: -0.2247 S22: -0.1194 S23: -0.0005 REMARK 3 S31: 0.6330 S32: 0.4083 S33: -0.1021 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103558. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100927 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 47.039 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.11 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 10.29 REMARK 200 R MERGE FOR SHELL (I) : 2.17200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ETZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: /PSFHOME/MARIA/DATA/441_LAC_FRU 35% REMARK 280 TACSIMATE PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.62500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.25000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 85.25000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.62500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 VAL A 3 REMARK 465 GLU A 4 REMARK 465 THR A 5 REMARK 465 PRO A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 PRO A 14 REMARK 465 HIS A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 PRO A 18 REMARK 465 GLY A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A1001 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 23 -151.65 -122.02 REMARK 500 ASP A 77 56.06 -110.74 REMARK 500 ALA A 85 70.06 56.55 REMARK 500 ASN A 110 -79.88 -87.18 REMARK 500 GLU A 118 70.67 -150.89 REMARK 500 ASP A 205 38.19 -98.33 REMARK 500 MET A 208 -175.27 -174.54 REMARK 500 MET A 208 -175.43 -174.42 REMARK 500 VAL A 519 61.28 36.79 REMARK 500 ALA A 521 41.24 -98.28 REMARK 500 HIS A 553 41.54 -85.88 REMARK 500 ASP A 584 42.20 -143.69 REMARK 500 PHE A 626 -48.33 -133.33 REMARK 500 SER A 819 -158.97 -155.79 REMARK 500 GLU A 838 -62.66 -105.66 REMARK 500 THR A 891 -158.75 -133.42 REMARK 500 GLU A 910 59.76 -92.97 REMARK 500 LEU A 930 73.31 -100.78 REMARK 500 THR A 982 39.97 -143.17 REMARK 500 CYS A 985 104.07 -165.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 207 OD2 REMARK 620 2 PHE A 581 O 133.6 REMARK 620 3 ASP A 584 OD2 142.0 80.9 REMARK 620 4 HOH A1407 O 89.6 111.2 90.7 REMARK 620 5 GAL B 2 O6 76.9 106.1 78.0 138.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1102 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 583 O REMARK 620 2 ASP A 766 OD2 120.2 REMARK 620 3 HOH A1304 O 100.3 139.3 REMARK 620 4 HOH A1428 O 100.0 93.7 81.9 REMARK 620 N 1 2 3 DBREF1 6SE9 A 1 1010 UNP A0A023UGN9_9MICC DBREF2 6SE9 A A0A023UGN9 1 1010 SEQADV 6SE9 GLN A 441 UNP A0A023UGN GLU 441 ENGINEERED MUTATION SEQRES 1 A 1010 MET SER VAL GLU THR PRO SER ALA LEU ALA ASP SER SER SEQRES 2 A 1010 PRO HIS THR ALA PRO GLY SER ALA GLY ARG SER LEU GLU SEQRES 3 A 1010 LEU GLY ALA ALA ASP ILE GLN ASP LEU GLU SER PHE GLU SEQRES 4 A 1010 ALA GLY ARG GLY ALA LEU PRO ALA ARG ALA TYR LEU GLN SEQRES 5 A 1010 SER ASP ALA PRO ARG LEU SER LEU ASN GLY GLU TRP GLN SEQRES 6 A 1010 PHE ARG LEU SER PRO GLY SER ARG VAL ALA PRO ASP ASP SEQRES 7 A 1010 GLY TRP GLN LEU GLY GLU ALA LEU ASN GLY PHE GLU SER SEQRES 8 A 1010 LEU PRO VAL PRO SER SER TRP PRO MET HIS GLY HIS GLY SEQRES 9 A 1010 ALA PRO ALA TYR THR ASN VAL GLN PHE PRO PHE ALA VAL SEQRES 10 A 1010 GLU PRO PRO HIS VAL PRO GLU ALA ASN PRO ILE GLY ASP SEQRES 11 A 1010 HIS LEU VAL VAL PHE GLU ALA GLY PRO GLU PHE PHE PRO SEQRES 12 A 1010 HIS ALA LEU LEU ARG PHE ASP GLY ILE GLU SER ALA GLY SEQRES 13 A 1010 THR VAL TRP LEU ASN GLY VAL GLU LEU GLY THR THR ARG SEQRES 14 A 1010 GLY SER ARG LEU ALA HIS GLU PHE ASP VAL SER GLY ILE SEQRES 15 A 1010 LEU GLU GLN GLY GLU ASN THR LEU ALA VAL ARG VAL ALA SEQRES 16 A 1010 GLN PHE SER ALA ALA SER TYR VAL GLU ASP GLN ASP MET SEQRES 17 A 1010 TRP TRP LEU PRO GLY ILE PHE ARG ASP VAL THR LEU GLN SEQRES 18 A 1010 ALA ARG PRO ALA ALA GLY ILE ASP ASP VAL PHE VAL HIS SEQRES 19 A 1010 ALA GLY TYR ASP HIS ILE THR GLY GLU GLY ILE LEU LYS SEQRES 20 A 1010 VAL GLU ALA SER ARG GLY GLY GLN ALA ILE ASP ALA VAL SEQRES 21 A 1010 VAL ARG VAL PRO GLU LEU ALA LEU GLU LEU ALA ALA GLY SEQRES 22 A 1010 THR GLU VAL ARG VAL PRO ALA VAL GLU PRO TRP SER ALA SEQRES 23 A 1010 GLU VAL PRO LYS LEU TYR GLU ALA ALA VAL SER ALA ALA SEQRES 24 A 1010 GLY GLU SER VAL ALA LEU GLN ILE GLY PHE ARG SER ILE SEQRES 25 A 1010 ALA ILE GLU ASP ALA GLN PHE LYS VAL ASN GLY ARG ARG SEQRES 26 A 1010 ILE LEU LEU ARG GLY VAL ASN ARG HIS GLU HIS HIS PRO SEQRES 27 A 1010 ARG LEU GLY ARG VAL VAL PRO ARG ASP VAL VAL GLU ALA SEQRES 28 A 1010 GLU LEU ARG LEU MET LYS GLN HIS ASN ILE ASN ALA ILE SEQRES 29 A 1010 ARG THR SER HIS TYR PRO PRO HIS PRO GLN PHE LEU ALA SEQRES 30 A 1010 LEU ALA ASP GLN LEU GLY PHE TYR VAL VAL LEU GLU CYS SEQRES 31 A 1010 ASP LEU GLU THR HIS GLY PHE GLU SER ALA GLY TRP ALA SEQRES 32 A 1010 GLN ASN PRO SER ASP ASP PRO GLN TRP GLU ASP ALA LEU SEQRES 33 A 1010 VAL ASP ARG MET ARG ARG THR VAL GLU ARG ASP LYS ASN SEQRES 34 A 1010 HIS ALA SER VAL VAL MET TRP SER LEU GLY ASN GLN ALA SEQRES 35 A 1010 GLY THR GLY ARG ASN LEU ALA ALA MET SER ARG TRP THR SEQRES 36 A 1010 LYS ASP ARG ASP PRO SER ARG PRO ILE HIS TYR GLU GLY SEQRES 37 A 1010 ASP TRP SER SER GLU HIS VAL ASP VAL TYR SER ARG MET SEQRES 38 A 1010 TYR ALA SER GLN ALA GLU THR ALA LEU ILE GLY GLN GLY SEQRES 39 A 1010 ILE GLU PRO ALA LEU ASN ASP ALA ALA LEU ASP ALA ARG SEQRES 40 A 1010 ARG ARG ALA MET PRO PHE VAL LEU CYS GLU TYR VAL HIS SEQRES 41 A 1010 ALA MET GLY ASN GLY PRO GLY GLY MET SER GLU TYR GLN SEQRES 42 A 1010 ALA LEU PHE GLU LYS TYR PRO ARG LEU MET GLY GLY PHE SEQRES 43 A 1010 VAL TRP GLU TRP LEU GLU HIS GLY ILE THR VAL SER THR SEQRES 44 A 1010 ALA ASP GLY VAL ASP HIS TYR GLY TYR GLY GLY ASP PHE SEQRES 45 A 1010 GLY GLU GLU VAL HIS ASP GLY ASN PHE VAL THR ASP GLY SEQRES 46 A 1010 LEU VAL ASP ALA ASP ARG ARG PRO ARG PRO GLY LEU LEU SEQRES 47 A 1010 ASP PHE LYS LYS VAL ILE GLU PRO LEU ARG ILE ASP VAL SEQRES 48 A 1010 ALA ARG ASP TRP THR GLY PHE THR LEU ARG ASN GLY GLN SEQRES 49 A 1010 ASP PHE ALA ASP THR SER ALA PHE SER PHE ARG TYR GLU SEQRES 50 A 1010 VAL GLU ALA ASP GLY GLY ALA LEU ASP GLY GLY THR VAL SEQRES 51 A 1010 ASP VAL ALA PRO VAL ALA PRO GLN SER GLU THR VAL VAL SEQRES 52 A 1010 GLU LEU PRO GLY SER VAL ALA ALA LEU ALA ALA GLY LEU SEQRES 53 A 1010 SER ASP GLY ARG PRO ALA VAL LEU THR VAL ARG ALA VAL SEQRES 54 A 1010 LEU GLY ALA ASP SER ALA TRP ALA ASP ALA GLY HIS GLU SEQRES 55 A 1010 VAL ALA TRP GLY GLN SER VAL ARG GLU PRO GLY ALA PRO SEQRES 56 A 1010 VAL PRO PRO ALA PRO VAL GLU PRO VAL GLN VAL GLN ASP SEQRES 57 A 1010 SER GLU LEU THR LEU GLY PRO VAL VAL PHE SER ARG ALA SEQRES 58 A 1010 THR GLY MET PRO THR SER ILE GLY GLY VAL PRO VAL GLU SEQRES 59 A 1010 LYS LEU GLY LEU THR LEU TRP TRP ALA PRO THR ASP ASN SEQRES 60 A 1010 ASP LEU GLY ARG GLU TRP GLY GLY ALA ASP GLU ARG PRO SEQRES 61 A 1010 LEU ALA THR GLN TRP LYS ASP ALA GLY LEU ASN ARG LEU SEQRES 62 A 1010 HIS THR ARG LEU LEU GLY ILE SER ALA ASN PRO GLY GLN SEQRES 63 A 1010 ASP GLY GLY GLU THR LEU THR VAL ARG THR ARG VAL SER SEQRES 64 A 1010 ALA ALA ASP LYS GLN TYR GLY VAL LEU VAL ASP TYR THR SEQRES 65 A 1010 TRP SER THR ASP GLY GLU THR VAL GLY LEU ARG THR GLN SEQRES 66 A 1010 VAL ARG ARG ASP GLY THR TRP VAL ASN ARG GLY PHE GLU SEQRES 67 A 1010 VAL GLU TRP ALA ARG ILE GLY LEU GLU PHE VAL LEU GLY SEQRES 68 A 1010 GLU GLU THR GLU LEU VAL SER TRP PHE GLY GLN GLY PRO SEQRES 69 A 1010 HIS GLN SER TYR PRO ASP THR GLY GLN GLY ALA ARG ALA SEQRES 70 A 1010 GLY TRP PHE SER LEU PRO LEU ALA LYS MET ASP VAL GLU SEQRES 71 A 1010 TYR VAL ARG PRO GLN GLU CYS GLY ALA ARG SER GLY SER SEQRES 72 A 1010 ARG SER ALA ALA LEU GLN LEU GLY GLY ARG THR LEU GLU SEQRES 73 A 1010 ILE CYS GLY ASP PRO PHE ALA LEU THR VAL ARG PRO TYR SEQRES 74 A 1010 SER GLN ASP VAL LEU ASP ALA ALA ALA HIS ARG PRO ASP SEQRES 75 A 1010 LEU LYS ALA ASP GLY ARG THR TYR LEU TYR VAL ASP HIS SEQRES 76 A 1010 ALA LEU ARG GLY VAL GLY THR ALA ALA CYS GLY PRO GLY SEQRES 77 A 1010 VAL LEU GLU GLN TYR ARG LEU LYS PRO ARG ASP ALA ASP SEQRES 78 A 1010 PHE ILE LEU THR LEU LYS VAL ARG SER HET BGC B 1 12 HET GAL B 2 11 HET NA A1101 1 HET NA A1102 1 HET ACT A1104 4 HET ACT A1105 4 HET MLI A1106 7 HET FMT A1107 3 HET FRU A1108 12 HET FRU A1109 12 HET GAL A1110 12 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETNAM MLI MALONATE ION HETNAM FMT FORMIC ACID HETNAM FRU BETA-D-FRUCTOFURANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 2 BGC C6 H12 O6 FORMUL 2 GAL 2(C6 H12 O6) FORMUL 3 NA 2(NA 1+) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 MLI C3 H2 O4 2- FORMUL 8 FMT C H2 O2 FORMUL 9 FRU 2(C6 H12 O6) FORMUL 12 HOH *400(H2 O) HELIX 1 AA1 GLY A 28 GLU A 36 1 9 HELIX 2 AA2 GLY A 79 GLY A 83 5 5 HELIX 3 AA3 SER A 97 GLY A 102 5 6 HELIX 4 AA4 GLY A 138 PHE A 142 5 5 HELIX 5 AA5 SER A 198 GLU A 204 5 7 HELIX 6 AA6 PRO A 264 ALA A 267 5 4 HELIX 7 AA7 PRO A 345 GLN A 358 1 14 HELIX 8 AA8 GLN A 374 GLY A 383 1 10 HELIX 9 AA9 THR A 394 GLY A 401 5 8 HELIX 10 AB1 ASN A 405 GLN A 411 5 7 HELIX 11 AB2 TRP A 412 LYS A 428 1 17 HELIX 12 AB3 GLY A 445 ASP A 459 1 15 HELIX 13 AB4 SER A 484 GLN A 493 1 10 HELIX 14 AB5 ASP A 501 ALA A 510 1 10 HELIX 15 AB6 GLY A 528 TYR A 539 1 12 HELIX 16 AB7 ASP A 578 THR A 583 5 6 HELIX 17 AB8 ARG A 594 ILE A 604 1 11 HELIX 18 AB9 PRO A 666 GLY A 675 1 10 HELIX 19 AC1 ASP A 766 GLY A 770 5 5 HELIX 20 AC2 PRO A 780 GLY A 789 1 10 HELIX 21 AC3 LEU A 904 ASP A 908 1 5 HELIX 22 AC4 SER A 950 ALA A 957 1 8 HELIX 23 AC5 HIS A 959 LEU A 963 5 5 HELIX 24 AC6 LEU A 990 ARG A 994 5 5 SHEET 1 AA1 5 GLN A 52 SER A 53 0 SHEET 2 AA1 5 GLU A 301 ILE A 307 -1 O ALA A 304 N GLN A 52 SHEET 3 AA1 5 TYR A 292 ALA A 298 -1 N VAL A 296 O VAL A 303 SHEET 4 AA1 5 VAL A 260 VAL A 263 -1 N ARG A 262 O ALA A 295 SHEET 5 AA1 5 LEU A 268 ALA A 271 -1 O LEU A 270 N VAL A 261 SHEET 1 AA2 4 ARG A 57 SER A 59 0 SHEET 2 AA2 4 VAL A 218 ALA A 222 -1 O LEU A 220 N LEU A 58 SHEET 3 AA2 4 ALA A 145 PHE A 149 -1 N ARG A 148 O THR A 219 SHEET 4 AA2 4 HIS A 175 ASP A 178 -1 O HIS A 175 N PHE A 149 SHEET 1 AA3 6 GLU A 90 VAL A 94 0 SHEET 2 AA3 6 GLY A 62 SER A 69 -1 N GLY A 62 O VAL A 94 SHEET 3 AA3 6 ILE A 128 ALA A 137 -1 O ILE A 128 N SER A 69 SHEET 4 AA3 6 GLY A 186 ALA A 195 -1 O VAL A 192 N HIS A 131 SHEET 5 AA3 6 ALA A 155 LEU A 160 -1 N TRP A 159 O ALA A 191 SHEET 6 AA3 6 VAL A 163 THR A 168 -1 O LEU A 165 N VAL A 158 SHEET 1 AA4 2 ALA A 107 THR A 109 0 SHEET 2 AA4 2 MET A 208 TRP A 210 -1 O TRP A 210 N ALA A 107 SHEET 1 AA5 3 ASP A 230 TYR A 237 0 SHEET 2 AA5 3 GLY A 244 ARG A 252 -1 O ILE A 245 N GLY A 236 SHEET 3 AA5 3 GLN A 255 ALA A 256 -1 O GLN A 255 N ARG A 252 SHEET 1 AA6 3 ASP A 230 TYR A 237 0 SHEET 2 AA6 3 GLY A 244 ARG A 252 -1 O ILE A 245 N GLY A 236 SHEET 3 AA6 3 VAL A 276 VAL A 278 -1 O VAL A 278 N GLY A 244 SHEET 1 AA7 3 ILE A 312 GLU A 315 0 SHEET 2 AA7 3 GLN A 318 VAL A 321 -1 O LYS A 320 N ALA A 313 SHEET 3 AA7 3 ARG A 324 ARG A 325 -1 O ARG A 324 N VAL A 321 SHEET 1 AA8 8 ILE A 464 HIS A 465 0 SHEET 2 AA8 8 VAL A 433 SER A 437 1 N TRP A 436 O HIS A 465 SHEET 3 AA8 8 TYR A 385 GLU A 389 1 N LEU A 388 O SER A 437 SHEET 4 AA8 8 ALA A 363 ARG A 365 1 N ILE A 364 O VAL A 387 SHEET 5 AA8 8 LEU A 328 ASN A 332 1 N VAL A 331 O ARG A 365 SHEET 6 AA8 8 LEU A 542 VAL A 547 1 O MET A 543 N LEU A 328 SHEET 7 AA8 8 PHE A 513 TYR A 518 1 N PHE A 513 O MET A 543 SHEET 8 AA8 8 TYR A 478 MET A 481 1 N TYR A 478 O VAL A 514 SHEET 1 AA9 2 ILE A 555 SER A 558 0 SHEET 2 AA9 2 ASP A 564 GLY A 567 -1 O GLY A 567 N ILE A 555 SHEET 1 AB1 3 LEU A 607 VAL A 611 0 SHEET 2 AB1 3 GLY A 617 ASN A 622 -1 O THR A 619 N ASP A 610 SHEET 3 AB1 3 GLU A 660 GLU A 664 -1 O THR A 661 N LEU A 620 SHEET 1 AB2 4 ALA A 644 VAL A 650 0 SHEET 2 AB2 4 PHE A 632 ALA A 640 -1 N VAL A 638 O LEU A 645 SHEET 3 AB2 4 ALA A 682 LEU A 690 -1 O ARG A 687 N ARG A 635 SHEET 4 AB2 4 GLU A 702 ARG A 710 -1 O ALA A 704 N ALA A 688 SHEET 1 AB313 GLN A 725 VAL A 726 0 SHEET 2 AB313 GLU A 730 LEU A 733 -1 O THR A 732 N GLN A 725 SHEET 3 AB313 VAL A 736 SER A 739 -1 O PHE A 738 N LEU A 731 SHEET 4 AB313 PRO A 745 ILE A 748 -1 O THR A 746 N VAL A 737 SHEET 5 AB313 VAL A 751 THR A 759 -1 O VAL A 753 N THR A 746 SHEET 6 AB313 ARG A 863 LEU A 870 -1 O VAL A 869 N GLU A 754 SHEET 7 AB313 THR A 969 LEU A 977 -1 O LEU A 971 N PHE A 868 SHEET 8 AB313 ARG A 933 ARG A 947 -1 N ARG A 947 O TYR A 970 SHEET 9 AB313 ALA A1000 ARG A1009 -1 O LYS A1007 N GLU A 936 SHEET 10 AB313 VAL A 840 ASP A 849 -1 N VAL A 846 O ALA A1000 SHEET 11 AB313 GLY A 826 THR A 835 -1 N SER A 834 O GLY A 841 SHEET 12 AB313 GLU A 810 ALA A 820 -1 N LEU A 812 O TRP A 833 SHEET 13 AB313 LEU A 793 PRO A 804 -1 N SER A 801 O THR A 813 SHEET 1 AB411 GLN A 725 VAL A 726 0 SHEET 2 AB411 GLU A 730 LEU A 733 -1 O THR A 732 N GLN A 725 SHEET 3 AB411 VAL A 736 SER A 739 -1 O PHE A 738 N LEU A 731 SHEET 4 AB411 PRO A 745 ILE A 748 -1 O THR A 746 N VAL A 737 SHEET 5 AB411 VAL A 751 THR A 759 -1 O VAL A 753 N THR A 746 SHEET 6 AB411 ARG A 863 LEU A 870 -1 O VAL A 869 N GLU A 754 SHEET 7 AB411 THR A 969 LEU A 977 -1 O LEU A 971 N PHE A 868 SHEET 8 AB411 ARG A 933 ARG A 947 -1 N ARG A 947 O TYR A 970 SHEET 9 AB411 ARG A 920 LEU A 930 -1 N LEU A 928 O LEU A 935 SHEET 10 AB411 LEU A 876 GLY A 883 -1 N PHE A 880 O ARG A 924 SHEET 11 AB411 ARG A 896 PRO A 903 -1 O LEU A 902 N VAL A 877 SHEET 1 AB5 2 VAL A 853 ASN A 854 0 SHEET 2 AB5 2 PHE A 857 GLU A 858 -1 O PHE A 857 N ASN A 854 LINK O4 BGC B 1 C1 GAL B 2 1555 1555 1.37 LINK OD2 ASP A 207 NA NA A1101 1555 1555 2.44 LINK O PHE A 581 NA NA A1101 1555 1555 2.37 LINK O THR A 583 NA NA A1102 1555 1555 2.84 LINK OD2 ASP A 584 NA NA A1101 1555 1555 2.51 LINK OD2 ASP A 766 NA NA A1102 1555 1555 2.85 LINK NA NA A1101 O HOH A1407 1555 1555 2.47 LINK NA NA A1101 O6 GAL B 2 1555 1555 2.58 LINK NA NA A1102 O HOH A1304 1555 1555 2.81 LINK NA NA A1102 O HOH A1428 1555 1555 2.48 CISPEP 1 VAL A 94 PRO A 95 0 4.51 CISPEP 2 PRO A 119 PRO A 120 0 0.79 CISPEP 3 PHE A 142 PRO A 143 0 5.87 CISPEP 4 GLU A 153 SER A 154 0 -0.91 CISPEP 5 SER A 367 HIS A 368 0 -16.50 CISPEP 6 GLY A 525 PRO A 526 0 1.01 CISPEP 7 TRP A 548 GLU A 549 0 -7.40 CISPEP 8 GLY A 883 PRO A 884 0 2.70 CRYST1 138.902 138.902 127.875 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007199 0.004157 0.000000 0.00000 SCALE2 0.000000 0.008313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007820 0.00000