HEADER IMMUNE SYSTEM 06-AUG-19 6SHG TITLE DIFFRACTION DATA FOR ROAB13 CRYSTAL CO-CRYSTALLISED WITH PIYDIN AND TITLE 2 ITS ROAB13 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY ROAB13 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: ANTIBODY ROAB13 LIGHT CHAIN; COMPND 6 CHAIN: L SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN, ANTI-CCR5 ANTIBODY, EPITOPE BINDING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR E.SARIDAKIS,J.R.HELLIWELL,L.GOVADA,B.CHAIN,M.MORGAN,S.C.KASSEN, AUTHOR 2 N.E.CHAYEN REVDAT 3 24-JAN-24 6SHG 1 REMARK REVDAT 2 03-MAR-21 6SHG 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQRES HELIX SHEET SSBOND REVDAT 2 3 1 ATOM REVDAT 1 15-JUL-20 6SHG 0 JRNL AUTH L.GOVADA,E.SARIDAKIS,S.C.KASSEN,A.BIN-RAMZI,M.MORGAN, JRNL AUTH 2 B.CHAIN,J.R.HELLIWELL,N.E.CHAYEN JRNL TITL X-RAY CRYSTALLOGRAPHY BASED MODEL OF THE ANTIBODY ROAB13 JRNL TITL 2 BOUND TO PEPTIDOMIMETICS OF THE HIV RECEPTOR CHEMOKINE JRNL TITL 3 RECEPTOR CCR5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.356 REMARK 3 COMPLETENESS FOR RANGE (%) : 86.5 REMARK 3 NUMBER OF REFLECTIONS : 10666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.261 REMARK 3 FREE R VALUE : 0.312 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.969 REMARK 3 FREE R VALUE TEST SET COUNT : 530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 67.5150 - 5.3179 1.00 3104 168 0.2554 0.3054 REMARK 3 2 5.3179 - 4.2212 1.00 2913 150 0.2399 0.2942 REMARK 3 3 4.2212 - 3.6877 0.96 2766 141 0.2854 0.3513 REMARK 3 4 3.6877 - 3.3510 0.48 1353 71 0.3150 0.3077 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.412 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.417 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 90.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3355 REMARK 3 ANGLE : 1.618 4568 REMARK 3 CHIRALITY : 0.068 516 REMARK 3 PLANARITY : 0.010 580 REMARK 3 DIHEDRAL : 4.053 2349 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 25.9101 4.3335 55.4332 REMARK 3 T TENSOR REMARK 3 T11: 1.1849 T22: 0.6348 REMARK 3 T33: 0.6532 T12: -0.2317 REMARK 3 T13: 0.3245 T23: 0.1692 REMARK 3 L TENSOR REMARK 3 L11: 1.2727 L22: 0.2718 REMARK 3 L33: 1.2604 L12: -0.0021 REMARK 3 L13: -0.4812 L23: -0.5410 REMARK 3 S TENSOR REMARK 3 S11: 0.1812 S12: -0.6707 S13: -0.2708 REMARK 3 S21: 0.0746 S22: -0.1538 S23: -0.2356 REMARK 3 S31: -0.4374 S32: 0.3993 S33: -0.0293 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SHG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11130 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.093 REMARK 200 RESOLUTION RANGE LOW (A) : 73.699 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 24.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4S2S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MG/ML PROTEIN, 20 MM HEPES PH 7.0, REMARK 280 0.1 M SODIUM CHLORIDE, 660 UM PIYDIN PEPTIDE, 1.8 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.03000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.30350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.30350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.51500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.30350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.30350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 202.54500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.30350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.30350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.51500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.30350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.30350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 202.54500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 135.03000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL H 133 REMARK 465 CYS H 134 REMARK 465 GLY H 135 REMARK 465 ASP H 136 REMARK 465 THR H 137 REMARK 465 THR H 138 REMARK 465 TRP L 154 REMARK 465 LYS L 155 REMARK 465 ILE L 156 REMARK 465 ASP L 157 REMARK 465 GLY L 158 REMARK 465 SER L 159 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR H 28 CG2 REMARK 470 THR H 31 CG2 REMARK 470 LEU H 144 CG CD1 CD2 REMARK 470 ASP L 1 CG OD1 OD2 REMARK 470 LYS L 109 CG CD CE NZ REMARK 470 LYS L 113 CG CD CE NZ REMARK 470 ARG L 114 CG CD NE CZ NH1 NH2 REMARK 470 GLU L 160 CG CD OE1 OE2 REMARK 470 LYS L 189 CG CD CE NZ REMARK 470 GLU L 193 CG CD OE1 OE2 REMARK 470 ARG L 194 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 205 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG H 99 OH TYR L 55 1.82 REMARK 500 NH1 ARG H 99 CE2 TYR L 55 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS H 95 CB CYS H 95 SG -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG H 219 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 CYS L 200 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO H 14 160.74 -49.54 REMARK 500 VAL H 48 -67.63 -121.62 REMARK 500 ASP H 55 -1.61 69.95 REMARK 500 ASN H 56 107.85 -53.25 REMARK 500 ALA H 91 -178.24 -174.37 REMARK 500 ARG H 102 -158.13 -153.98 REMARK 500 SER H 166 -65.71 -92.12 REMARK 500 ALA H 207 -11.74 70.09 REMARK 500 SER H 209 26.74 46.26 REMARK 500 ILE H 223 -55.10 -121.83 REMARK 500 SER L 10 -169.97 -104.38 REMARK 500 GLU L 17 -176.22 -69.05 REMARK 500 TRP L 56 23.62 48.03 REMARK 500 ALA L 57 -8.85 73.71 REMARK 500 SER L 58 -40.14 -135.38 REMARK 500 GLU L 87 1.91 -65.96 REMARK 500 THR L 90 -162.61 -173.97 REMARK 500 ARG L 114 -62.04 -109.85 REMARK 500 SER L 128 -3.17 -56.22 REMARK 500 LYS L 148 -7.84 -53.91 REMARK 500 TYR L 179 -169.63 -128.76 REMARK 500 SER L 180 149.15 -175.17 REMARK 500 SER L 183 98.66 -162.13 REMARK 500 THR L 184 76.66 -101.07 REMARK 500 PRO L 210 171.48 -58.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA H 207 SER H 208 137.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4S2S RELATED DB: PDB REMARK 900 4S2S CONTAINS THE SAME ANTIBODY, BUT NOT SOAKED WITH PEPTIDOMIMETIC REMARK 900 LIGAND DBREF 6SHG H 1 224 PDB 6SHG 6SHG 1 224 DBREF 6SHG L 1 220 PDB 6SHG 6SHG 1 220 SEQRES 1 H 224 GLU VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 224 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 224 PHE THR PHE SER THR TYR ALA MET SER TRP VAL ARG GLN SEQRES 4 H 224 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 H 224 THR GLY ASP ASN THR TYR TYR THR ASP SER VAL ARG GLY SEQRES 6 H 224 ARG PHE THR ILE SER ARG ASP ASN ALA ARG ASN ILE LEU SEQRES 7 H 224 TYR LEU GLN MET SER SER LEU ARG SER GLU ASP THR ALA SEQRES 8 H 224 MET TYR PHE CYS THR ARG GLY ARG GLY ASP ARG GLY ASP SEQRES 9 H 224 LEU PHE GLY TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 224 SER SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU SEQRES 11 H 224 ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR SEQRES 12 H 224 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 224 THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 224 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 224 LEU SER SER SER VAL THR VAL THR SER SER THR TRP PRO SEQRES 16 H 224 SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 224 SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG GLY PRO SEQRES 18 H 224 THR ILE LYS SEQRES 1 L 220 ASP ILE VAL MET SER GLN SER PRO SER SER LEU ALA VAL SEQRES 2 L 220 SER VAL GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 L 220 GLN SER LEU LEU TYR ARG GLY ASN GLN MET ASN TYR LEU SEQRES 4 L 220 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 L 220 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE THR GLY SER GLY SER GLY THR GLU PHE THR SEQRES 7 L 220 LEU THR ILE SER SER VAL LYS ALA GLU ASP LEU THR VAL SEQRES 8 L 220 TYR TYR CYS GLN GLN TYR TYR THR TYR PRO ARG THR PHE SEQRES 9 L 220 GLY GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA SEQRES 10 L 220 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 L 220 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 L 220 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 L 220 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 L 220 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 L 220 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 L 220 SER PRO ILE VAL LYS SER PHE ASN ARG GLY GLU CYS FORMUL 3 HOH *4(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 ASP H 61 ARG H 64 5 4 HELIX 3 AA3 GLU L 129 GLY L 134 1 6 HELIX 4 AA4 LYS L 189 GLU L 193 5 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 SER H 17 SER H 25 -1 O ALA H 23 N GLN H 5 SHEET 3 AA1 4 ILE H 77 SER H 83 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA2 6 GLY H 10 LEU H 11 0 SHEET 2 AA2 6 THR H 113 THR H 116 1 O LEU H 114 N GLY H 10 SHEET 3 AA2 6 ALA H 91 GLY H 98 -1 N TYR H 93 O THR H 113 SHEET 4 AA2 6 MET H 34 GLN H 39 -1 N VAL H 37 O PHE H 94 SHEET 5 AA2 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O TYR H 58 N SER H 50 SHEET 1 AA3 4 GLY H 10 LEU H 11 0 SHEET 2 AA3 4 THR H 113 THR H 116 1 O LEU H 114 N GLY H 10 SHEET 3 AA3 4 ALA H 91 GLY H 98 -1 N TYR H 93 O THR H 113 SHEET 4 AA3 4 PHE H 106 TRP H 109 -1 O GLY H 107 N ARG H 97 SHEET 1 AA4 4 TYR H 128 LEU H 130 0 SHEET 2 AA4 4 SER H 141 LYS H 149 -1 O GLY H 145 N LEU H 130 SHEET 3 AA4 4 SER H 185 THR H 190 -1 O VAL H 187 N LEU H 144 SHEET 4 AA4 4 HIS H 170 THR H 171 -1 N HIS H 170 O SER H 186 SHEET 1 AA5 4 TYR H 128 LEU H 130 0 SHEET 2 AA5 4 SER H 141 LYS H 149 -1 O GLY H 145 N LEU H 130 SHEET 3 AA5 4 LEU H 180 LEU H 183 -1 O LEU H 183 N VAL H 148 SHEET 4 AA5 4 VAL H 175 GLN H 177 -1 N GLN H 177 O LEU H 180 SHEET 1 AA6 3 THR H 157 TRP H 160 0 SHEET 2 AA6 3 ILE H 199 HIS H 205 -1 O ASN H 202 N THR H 159 SHEET 3 AA6 3 THR H 210 ILE H 216 -1 O VAL H 212 N VAL H 203 SHEET 1 AA7 4 SER L 5 SER L 7 0 SHEET 2 AA7 4 VAL L 19 LYS L 24 -1 O LYS L 24 N SER L 5 SHEET 3 AA7 4 GLU L 76 ILE L 81 -1 O ILE L 81 N VAL L 19 SHEET 4 AA7 4 PHE L 68 SER L 73 -1 N THR L 69 O THR L 80 SHEET 1 AA8 2 ALA L 12 VAL L 13 0 SHEET 2 AA8 2 GLU L 111 ILE L 112 1 O GLU L 111 N VAL L 13 SHEET 1 AA9 5 THR L 59 ARG L 60 0 SHEET 2 AA9 5 LYS L 51 TYR L 55 -1 N TYR L 55 O THR L 59 SHEET 3 AA9 5 LEU L 39 GLN L 44 -1 N TRP L 41 O ILE L 54 SHEET 4 AA9 5 VAL L 91 GLN L 96 -1 O TYR L 93 N TYR L 42 SHEET 5 AA9 5 THR L 103 PHE L 104 -1 O THR L 103 N GLN L 96 SHEET 1 AB1 5 THR L 59 ARG L 60 0 SHEET 2 AB1 5 LYS L 51 TYR L 55 -1 N TYR L 55 O THR L 59 SHEET 3 AB1 5 LEU L 39 GLN L 44 -1 N TRP L 41 O ILE L 54 SHEET 4 AB1 5 VAL L 91 GLN L 96 -1 O TYR L 93 N TYR L 42 SHEET 5 AB1 5 THR L 108 LYS L 109 -1 O THR L 108 N TYR L 92 SHEET 1 AB2 3 ILE L 123 PHE L 124 0 SHEET 2 AB2 3 ALA L 136 CYS L 140 -1 O VAL L 139 N PHE L 124 SHEET 3 AB2 3 LEU L 185 LEU L 187 -1 O LEU L 185 N VAL L 138 SHEET 1 AB3 2 LEU L 142 PHE L 145 0 SHEET 2 AB3 2 TYR L 179 MET L 181 -1 O MET L 181 N LEU L 142 SHEET 1 AB4 2 SER L 197 ALA L 202 0 SHEET 2 AB4 2 ILE L 211 ASN L 216 -1 O ILE L 211 N ALA L 202 SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.07 SSBOND 2 CYS H 146 CYS H 201 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 94 1555 1555 2.12 SSBOND 4 CYS L 140 CYS L 200 1555 1555 2.09 CISPEP 1 PHE H 152 PRO H 153 0 12.62 CISPEP 2 GLU H 154 PRO H 155 0 15.04 CISPEP 3 TRP H 194 PRO H 195 0 -3.96 CISPEP 4 SER L 7 PRO L 8 0 0.30 CISPEP 5 TYR L 100 PRO L 101 0 -7.13 CISPEP 6 TYR L 146 PRO L 147 0 6.54 CRYST1 76.607 76.607 270.060 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013054 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003703 0.00000