HEADER VIRUS 07-AUG-19 6SHL TITLE STRUCTURE OF A MARINE ALGAE VIRUS OF THE ORDER PICORNAVIRALES COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP1; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: VP2; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: VP3; COMPND 9 CHAIN: C; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: VP4; COMPND 12 CHAIN: D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOCEROS TENUISSIMUS RNA VIRUS TYPE-II; SOURCE 3 ORGANISM_TAXID: 1516128; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: CHAETOCEROS TENUISSIMUS RNA VIRUS TYPE-II; SOURCE 6 ORGANISM_TAXID: 1516128; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: CHAETOCEROS TENUISSIMUS RNA VIRUS TYPE-II; SOURCE 9 ORGANISM_TAXID: 1516128; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: CHAETOCEROS TENUISSIMUS RNA VIRUS TYPE-II; SOURCE 12 ORGANISM_TAXID: 1516128 KEYWDS PICORNAVIRALES, MARNAVIRIDAE, ICOSAHEDRAL VIRUS, ALGAE VIRUS, JELLY KEYWDS 2 ROLL, VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR A.MUNKE,Y.TOMARU,K.KIMURA,K.OKAMOTO REVDAT 5 30-SEP-20 6SHL 1 JRNL REVDAT 4 29-APR-20 6SHL 1 JRNL REVDAT 3 04-MAR-20 6SHL 1 REMARK REVDAT 2 19-FEB-20 6SHL 1 JRNL REVDAT 1 12-FEB-20 6SHL 0 JRNL AUTH A.MUNKE,K.KIMURA,Y.TOMARU,K.OKAMOTO JRNL TITL CAPSID STRUCTURE OF A MARINE ALGAL VIRUS OF THE ORDER JRNL TITL 2 PICORNAVIRALES . JRNL REF J.VIROL. V. 94 2020 JRNL REFN ESSN 1098-5514 JRNL PMID 32024776 JRNL DOI 10.1128/JVI.01855-19 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CTFFIND, COOT, RELION, RELION, RELION, REMARK 3 RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : BACKBONE TRACE REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 8315 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6SHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103438. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CHAETOCEROS TENUISSIMUS RNA REMARK 245 VIRUS TYPE-II REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2592 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 29.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 140000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.670735 -0.162290 -0.723724 289.85000 REMARK 350 BIOMT2 2 0.688232 0.499942 0.525733 -170.27300 REMARK 350 BIOMT3 2 0.276499 -0.850717 0.447022 268.86300 REMARK 350 BIOMT1 3 0.138070 0.425628 -0.894303 317.37300 REMARK 350 BIOMT2 3 0.951060 -0.309006 -0.000233 85.41720 REMARK 350 BIOMT3 3 -0.276444 -0.850504 -0.447462 614.05000 REMARK 350 BIOMT1 4 0.137921 0.951099 -0.276386 44.68970 REMARK 350 BIOMT2 4 0.425383 -0.308887 -0.850669 413.61900 REMARK 350 BIOMT3 4 -0.894442 -0.000245 -0.447183 558.58900 REMARK 350 BIOMT1 5 0.670902 0.688166 0.276258 -151.56400 REMARK 350 BIOMT2 5 -0.162575 0.499979 -0.850641 360.94800 REMARK 350 BIOMT3 5 -0.723505 0.525784 0.447315 178.98300 REMARK 350 BIOMT1 6 0.447158 0.850657 -0.276462 -5.08666 REMARK 350 BIOMT2 6 0.525782 0.000066 0.850619 -89.80050 REMARK 350 BIOMT3 6 0.723604 -0.525720 -0.447231 297.99800 REMARK 350 BIOMT1 7 -0.309087 0.951034 0.000114 85.39250 REMARK 350 BIOMT2 7 0.951034 0.309087 -0.000136 -62.01700 REMARK 350 BIOMT3 7 -0.000165 0.000067 -1.000000 477.08400 REMARK 350 BIOMT1 8 -0.361984 0.587848 0.723466 12.08270 REMARK 350 BIOMT2 8 0.262973 0.808972 -0.525747 108.25300 REMARK 350 BIOMT3 8 -0.894323 -0.000060 -0.447423 558.57900 REMARK 350 BIOMT1 9 0.361874 0.263107 0.894328 -123.90100 REMARK 350 BIOMT2 9 -0.587758 0.809037 -0.000189 185.81100 REMARK 350 BIOMT3 9 -0.723594 -0.525580 0.447412 429.73000 REMARK 350 BIOMT1 10 0.861859 0.425251 0.276333 -134.38500 REMARK 350 BIOMT2 10 -0.425293 0.309220 0.850593 63.31160 REMARK 350 BIOMT3 10 0.276268 -0.850614 0.447361 268.78300 REMARK 350 BIOMT1 11 0.670768 -0.688222 0.276443 176.75400 REMARK 350 BIOMT2 11 0.162530 0.500072 0.850595 -122.41400 REMARK 350 BIOMT3 11 -0.723640 -0.525622 0.447289 429.80700 REMARK 350 BIOMT1 12 0.947226 -0.162435 -0.276364 117.27000 REMARK 350 BIOMT2 12 0.162449 -0.499987 0.850660 116.12400 REMARK 350 BIOMT3 12 -0.276355 -0.850663 -0.447214 614.02600 REMARK 350 BIOMT1 13 0.809099 0.587672 -0.000319 -94.56210 REMARK 350 BIOMT2 13 0.587672 -0.809099 0.000242 291.29100 REMARK 350 BIOMT3 13 -0.000115 -0.000383 -1.000000 477.17200 REMARK 350 BIOMT1 14 0.447431 0.525642 0.723537 -166.19100 REMARK 350 BIOMT2 14 0.850619 -0.000325 -0.525782 161.14700 REMARK 350 BIOMT3 14 -0.276138 0.850706 -0.447266 208.13100 REMARK 350 BIOMT1 15 0.361681 -0.262782 0.894501 1.58076 REMARK 350 BIOMT2 15 0.588010 0.808854 -0.000134 -94.63640 REMARK 350 BIOMT3 15 -0.723485 0.526024 0.447066 178.95500 REMARK 350 BIOMT1 16 0.309054 -0.951044 0.000066 391.64100 REMARK 350 BIOMT2 16 0.951044 0.309054 -0.000078 -62.00410 REMARK 350 BIOMT3 16 0.000054 0.000087 1.000000 -0.03841 REMARK 350 BIOMT1 17 0.052859 -0.688161 -0.723630 562.67300 REMARK 350 BIOMT2 17 0.688195 -0.499981 0.525745 68.22890 REMARK 350 BIOMT3 17 -0.723598 -0.525789 0.447160 429.86600 REMARK 350 BIOMT1 18 0.446955 -0.000110 -0.894556 345.32200 REMARK 350 BIOMT2 18 0.000174 -1.000000 0.000210 476.95600 REMARK 350 BIOMT3 18 -0.894556 -0.000249 -0.446955 558.55300 REMARK 350 BIOMT1 19 0.947212 0.162285 -0.276502 39.82170 REMARK 350 BIOMT2 19 -0.162566 -0.500229 -0.850496 599.49700 REMARK 350 BIOMT3 19 -0.276337 0.850550 -0.447441 208.25900 REMARK 350 BIOMT1 20 0.861848 -0.425174 0.276488 68.43800 REMARK 350 BIOMT2 20 0.425264 0.308782 -0.850767 266.36700 REMARK 350 BIOMT3 20 0.276349 0.850812 0.446934 -136.95300 REMARK 350 BIOMT1 21 0.361814 -0.587797 -0.723592 465.02300 REMARK 350 BIOMT2 21 0.262867 0.809008 -0.525744 108.27800 REMARK 350 BIOMT3 21 0.894423 0.000013 0.447223 -81.50170 REMARK 350 BIOMT1 22 -0.447267 -0.525625 -0.723651 643.20400 REMARK 350 BIOMT2 22 0.850661 -0.000072 -0.525715 161.03500 REMARK 350 BIOMT3 22 0.276277 -0.850716 0.447161 268.87200 REMARK 350 BIOMT1 23 -0.638346 0.262684 -0.723541 500.72200 REMARK 350 BIOMT2 23 0.263036 -0.808946 -0.525755 494.14100 REMARK 350 BIOMT3 23 -0.723413 -0.525931 0.447292 429.81900 REMARK 350 BIOMT1 24 0.052805 0.688038 -0.723751 234.43700 REMARK 350 BIOMT2 24 -0.688080 -0.500182 -0.525703 647.36500 REMARK 350 BIOMT3 24 -0.723711 0.525758 0.447013 179.09100 REMARK 350 BIOMT1 25 0.670900 0.162533 -0.723517 212.32700 REMARK 350 BIOMT2 25 -0.688203 0.499839 -0.525869 408.89200 REMARK 350 BIOMT3 25 0.276171 0.850732 0.447197 -136.95400 REMARK 350 BIOMT1 26 0.361863 0.587821 -0.723548 184.58400 REMARK 350 BIOMT2 26 -0.262943 0.808991 0.525732 -17.10300 REMARK 350 BIOMT3 26 0.894380 0.000009 0.447307 -81.50550 REMARK 350 BIOMT1 27 -0.361838 0.262940 -0.894391 475.45500 REMARK 350 BIOMT2 27 0.587797 0.809009 0.000038 -94.65610 REMARK 350 BIOMT3 27 0.723580 -0.525707 -0.447285 298.00500 REMARK 350 BIOMT1 28 -0.861830 0.425126 -0.276618 408.67500 REMARK 350 BIOMT2 28 0.425500 0.309189 -0.850501 266.14400 REMARK 350 BIOMT3 28 -0.276043 -0.850688 -0.447359 613.96800 REMARK 350 BIOMT1 29 -0.447231 0.850704 0.276202 76.39210 REMARK 350 BIOMT2 29 -0.525473 -0.000014 -0.850810 566.81800 REMARK 350 BIOMT3 29 -0.723784 -0.525645 0.447028 429.89100 REMARK 350 BIOMT1 30 0.309041 0.951049 0.000197 -62.06560 REMARK 350 BIOMT2 30 -0.951049 0.309041 -0.000273 391.72500 REMARK 350 BIOMT3 30 -0.000321 -0.000103 1.000000 0.08786 REMARK 350 BIOMT1 31 -0.309071 -0.951039 -0.000075 539.11100 REMARK 350 BIOMT2 31 -0.951039 0.309071 0.000117 391.63700 REMARK 350 BIOMT3 31 -0.000088 0.000108 -1.000000 477.03200 REMARK 350 BIOMT1 32 -0.052846 -0.688177 0.723616 242.69300 REMARK 350 BIOMT2 32 -0.688222 -0.499956 -0.525732 647.33000 REMARK 350 BIOMT3 32 0.723573 -0.525791 -0.447198 298.00600 REMARK 350 BIOMT1 33 -0.446927 -0.000121 0.894571 131.79300 REMARK 350 BIOMT2 33 -0.000194 -1.000000 -0.000232 477.15000 REMARK 350 BIOMT3 33 0.894571 -0.000277 0.446927 -81.39910 REMARK 350 BIOMT1 34 -0.947199 0.162296 0.276538 359.76900 REMARK 350 BIOMT2 34 0.162586 -0.500251 0.850479 116.22900 REMARK 350 BIOMT3 34 0.276368 0.850534 0.447450 -137.02200 REMARK 350 BIOMT1 35 -0.861864 -0.425153 -0.276468 611.47100 REMARK 350 BIOMT2 35 -0.425229 0.308769 0.850789 63.37600 REMARK 350 BIOMT3 35 -0.276351 0.850827 -0.446905 208.07400 REMARK 350 BIOMT1 36 -0.670911 -0.162559 0.723501 264.77100 REMARK 350 BIOMT2 36 -0.688102 0.500145 -0.525710 408.76400 REMARK 350 BIOMT3 36 -0.276396 -0.850547 -0.447410 614.06400 REMARK 350 BIOMT1 37 -0.138283 0.425289 0.894431 -43.27200 REMARK 350 BIOMT2 37 -0.951062 -0.309000 -0.000113 539.12800 REMARK 350 BIOMT3 37 0.276331 -0.850675 0.447206 268.86000 REMARK 350 BIOMT1 38 -0.137979 0.950995 0.276714 -21.41540 REMARK 350 BIOMT2 38 -0.425590 -0.309206 0.850449 210.95400 REMARK 350 BIOMT3 38 0.894335 -0.000423 0.447398 -81.43510 REMARK 350 BIOMT1 39 -0.670832 0.688275 -0.276157 300.21200 REMARK 350 BIOMT2 39 0.162375 0.499655 0.850870 -122.33400 REMARK 350 BIOMT3 39 0.723615 0.525950 -0.446943 47.02780 REMARK 350 BIOMT1 40 -1.000000 0.000007 -0.000242 477.13700 REMARK 350 BIOMT2 40 0.000007 1.000000 0.000382 -0.11534 REMARK 350 BIOMT3 40 0.000242 0.000382 -1.000000 476.87900 REMARK 350 BIOMT1 41 -0.361730 -0.262837 -0.894465 600.87100 REMARK 350 BIOMT2 41 -0.587973 0.808880 0.000094 185.79700 REMARK 350 BIOMT3 41 0.723491 0.525956 -0.447137 47.13500 REMARK 350 BIOMT1 42 -0.670756 -0.688251 -0.276401 628.64700 REMARK 350 BIOMT2 42 -0.162537 0.500017 -0.850626 360.91300 REMARK 350 BIOMT3 42 0.723649 -0.525637 -0.447256 297.99100 REMARK 350 BIOMT1 43 -0.947123 -0.162942 0.276421 437.37900 REMARK 350 BIOMT2 43 -0.162331 -0.499772 -0.850809 599.41700 REMARK 350 BIOMT3 43 0.276780 -0.850693 0.446895 268.83400 REMARK 350 BIOMT1 44 -0.809231 0.587491 -0.000081 291.39800 REMARK 350 BIOMT2 44 -0.587491 -0.809231 -0.000263 571.78500 REMARK 350 BIOMT3 44 -0.000220 -0.000165 1.000000 0.05410 REMARK 350 BIOMT1 45 -0.447245 0.525827 -0.723517 392.36400 REMARK 350 BIOMT2 45 -0.850733 -0.000395 0.525597 316.16700 REMARK 350 BIOMT3 45 0.276087 0.850591 0.447516 -137.01300 REMARK 350 BIOMT1 46 0.138134 -0.425283 -0.894457 520.37000 REMARK 350 BIOMT2 46 -0.951029 -0.309102 0.000097 539.09200 REMARK 350 BIOMT3 46 -0.276519 0.850641 -0.447154 208.22900 REMARK 350 BIOMT1 47 0.447168 -0.850678 -0.276384 400.71100 REMARK 350 BIOMT2 47 -0.525771 -0.000010 -0.850626 566.83100 REMARK 350 BIOMT3 47 0.723606 0.525688 -0.447266 47.20870 REMARK 350 BIOMT1 48 -0.137847 -0.951095 0.276437 432.34000 REMARK 350 BIOMT2 48 0.425108 -0.308900 -0.850802 413.74300 REMARK 350 BIOMT3 48 0.894584 0.000235 0.446899 -81.52140 REMARK 350 BIOMT1 49 -0.808889 -0.587961 -0.000074 571.71500 REMARK 350 BIOMT2 49 0.587961 -0.808889 -0.000246 291.30100 REMARK 350 BIOMT3 49 0.000084 -0.000242 1.000000 0.01087 REMARK 350 BIOMT1 50 -0.638335 -0.262785 -0.723514 626.06000 REMARK 350 BIOMT2 50 -0.262635 -0.809170 0.525611 368.81200 REMARK 350 BIOMT3 50 -0.723568 0.525536 0.447505 178.99900 REMARK 350 BIOMT1 51 0.138098 -0.951062 -0.276425 498.38800 REMARK 350 BIOMT2 51 -0.425241 -0.309001 0.850699 210.76100 REMARK 350 BIOMT3 51 -0.894483 0.000067 -0.447103 558.52400 REMARK 350 BIOMT1 52 0.808993 -0.587818 0.000035 185.76800 REMARK 350 BIOMT2 52 -0.587818 -0.808993 -0.000001 571.71900 REMARK 350 BIOMT3 52 0.000029 -0.000020 -1.000000 477.05400 REMARK 350 BIOMT1 53 0.638451 -0.262836 0.723393 -23.62490 REMARK 350 BIOMT2 53 0.262588 -0.809106 -0.525733 494.29800 REMARK 350 BIOMT3 53 0.723483 0.525609 -0.447557 47.31390 REMARK 350 BIOMT1 54 -0.138032 -0.425489 0.894375 159.58800 REMARK 350 BIOMT2 54 0.951012 -0.309154 -0.000304 85.50530 REMARK 350 BIOMT3 54 0.276629 0.850519 0.447318 -137.07500 REMARK 350 BIOMT1 55 -0.447359 -0.850557 0.276447 482.20300 REMARK 350 BIOMT2 55 0.525944 -0.000191 0.850519 -89.76920 REMARK 350 BIOMT3 55 -0.723362 0.525883 0.447431 178.88300 REMARK 350 BIOMT1 56 -0.361765 -0.587828 0.723592 292.44500 REMARK 350 BIOMT2 56 -0.262926 0.808986 0.525748 -17.11540 REMARK 350 BIOMT3 56 -0.894425 -0.000054 -0.447218 558.55300 REMARK 350 BIOMT1 57 0.447310 -0.525593 0.723648 84.60470 REMARK 350 BIOMT2 57 -0.850658 -0.000138 0.525719 316.07400 REMARK 350 BIOMT3 57 -0.276214 -0.850736 -0.447162 613.98900 REMARK 350 BIOMT1 58 0.638329 0.262728 0.723540 -148.97900 REMARK 350 BIOMT2 58 -0.262975 -0.808967 0.525753 368.81600 REMARK 350 BIOMT3 58 0.723450 -0.525876 -0.447296 298.07300 REMARK 350 BIOMT1 59 -0.052854 0.688030 0.723755 -85.63140 REMARK 350 BIOMT2 59 0.688119 -0.500134 0.525698 68.31180 REMARK 350 BIOMT3 59 0.723671 0.525814 -0.447012 47.07390 REMARK 350 BIOMT1 60 -0.670910 0.162479 0.723519 187.24700 REMARK 350 BIOMT2 60 0.688166 0.499889 0.525869 -170.29500 REMARK 350 BIOMT3 60 -0.276237 0.850712 -0.447193 208.13800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR C 365A REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 130 CA - CB - CG ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 606 40.64 -141.35 REMARK 500 ASN A 612 86.94 -159.69 REMARK 500 ALA A 622 70.75 48.60 REMARK 500 ASN A 629 50.66 -93.51 REMARK 500 LEU A 652 -62.93 -95.72 REMARK 500 PHE A 700 55.20 -96.57 REMARK 500 ASN A 789 -37.35 -130.95 REMARK 500 ASN A 790 29.42 44.88 REMARK 500 ASN A 833 -5.46 73.89 REMARK 500 ALA B 4 66.73 61.77 REMARK 500 ASN B 23 6.03 86.19 REMARK 500 GLU B 57 52.82 -94.44 REMARK 500 ARG B 103 72.23 44.67 REMARK 500 THR B 136 70.06 59.30 REMARK 500 GLN B 166 117.83 -164.16 REMARK 500 LEU B 169 77.97 55.02 REMARK 500 ILE B 172 122.53 -35.67 REMARK 500 TYR B 177 70.85 59.47 REMARK 500 GLN B 188 63.24 -100.30 REMARK 500 ASP B 198 -72.44 -121.36 REMARK 500 VAL B 199 142.70 -172.53 REMARK 500 GLU B 219 -62.22 -98.02 REMARK 500 LYS C 362 49.42 -93.29 REMARK 500 THR C 368 -158.00 -146.23 REMARK 500 LEU C 373 -166.49 -102.65 REMARK 500 LEU C 469 -72.07 -98.02 REMARK 500 THR C 485 72.09 60.41 REMARK 500 THR C 523 9.21 54.11 REMARK 500 VAL C 572 82.72 54.57 REMARK 500 ALA D 285 -20.76 72.18 REMARK 500 SER D 286 -19.67 -147.59 REMARK 500 ALA D 287 -158.32 -146.56 REMARK 500 LYS D 290 -41.79 -29.55 REMARK 500 ASP D 293 33.19 -93.09 REMARK 500 ALA D 294 37.84 -97.00 REMARK 500 SER D 309 52.64 -95.33 REMARK 500 MET D 310 -146.97 -150.92 REMARK 500 VAL D 311 -23.71 -39.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE B 171 ILE B 172 -146.07 REMARK 500 ALA C 421 SER C 422 -136.63 REMARK 500 SER D 286 ALA D 287 -138.89 REMARK 500 ALA D 289 LYS D 290 -143.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10200 RELATED DB: EMDB REMARK 900 STRUCTURE OF A MARINE ALGAE VIRUS OF THE ORDER PICORNAVIRALES DBREF1 6SHL A 603 869 UNP A0A0B6VJB4_9VIRU DBREF2 6SHL A A0A0B6VJB4 603 869 DBREF1 6SHL B 2 232 UNP A0A0B6VJB4_9VIRU DBREF2 6SHL B A0A0B6VJB4 2 232 DBREF1 6SHL C 326 586 UNP A0A0B6VJB4_9VIRU DBREF2 6SHL C A0A0B6VJB4 325 586 DBREF1 6SHL D 274 324 UNP A0A0B6VMZ2_9VIRU DBREF2 6SHL D A0A0B6VMZ2 274 324 SEQRES 1 A 267 ASP ASN SER ASN ASN PRO VAL GLY GLY ASN PRO ILE ASP SEQRES 2 A 267 ASN TYR GLY THR GLU HIS ALA PRO LEU LEU LYS GLU ASP SEQRES 3 A 267 ASN GLN TYR LEU VAL TYR GLN GLY GLU ARG ILE VAL SER SEQRES 4 A 267 PHE LYS ASP LEU LEU ARG ARG TYR GLN TYR LEU ASN SER SEQRES 5 A 267 TYR TRP PRO GLN GLU THR GLY SER GLY PHE ARG TYR TYR SEQRES 6 A 267 THR LEU ASP SER PRO GLY MET PRO ILE TYR ARG GLY TRP SEQRES 7 A 267 ASP PRO ASN GLY ILE ASP GLN GLY GLN ASP SER THR ALA SEQRES 8 A 267 GLY ASN SER PRO TYR ASN PHE CYS SER MET THR LEU LEU SEQRES 9 A 267 ASN TYR LEU ALA PRO ALA PHE VAL CYS GLN ARG GLY SER SEQRES 10 A 267 LEU ARG HIS LYS TRP VAL THR ALA GLY ALA ARG VAL ASN SEQRES 11 A 267 SER THR ALA SER VAL LEU SER ALA THR ARG HIS GLY VAL SEQRES 12 A 267 LEU PHE PRO LEU PRO LEU ALA GLU THR ALA HIS PRO LEU SEQRES 13 A 267 ASP ASN ALA LEU VAL GLY ASP ARG ARG SER GLU LEU GLN SEQRES 14 A 267 GLU MET GLN ARG SER ARG LEU ASN GLY THR ALA ILE THR SEQRES 15 A 267 PRO VAL ARG LEU ASN ASN THR LEU GLU ILE GLU LEU PRO SEQRES 16 A 267 TYR TYR SER ILE GLY GLN ARG PHE HIS ALA SER ARG PHE SEQRES 17 A 267 LEU ASP LEU ALA GLY THR GLY ASP THR GLN GLY VAL GLU SEQRES 18 A 267 ILE ALA CYS GLU ILE SER ASP GLY GLY ASN ASP ALA ASN SEQRES 19 A 267 TYR ARG LEU ASP GLN PHE VAL SER VAL GLY GLU ASP PHE SEQRES 20 A 267 THR LEU GLY MET PHE VAL GLY ALA PRO ILE MET TYR PHE SEQRES 21 A 267 TYR ASN ASP PRO THR ALA THR SEQRES 1 B 231 PRO SER ALA ASN ASP GLY PRO SER PHE THR THR SER LYS SEQRES 2 B 231 THR SER GLN ASN THR THR SER GLU ASN VAL HIS PHE VAL SEQRES 3 B 231 ASP GLY ASP THR PRO TRP THR TYR ASP VAL ALA ALA THR SEQRES 4 B 231 PRO ASP GLU THR SER LYS LEU SER GLY PHE ASP ASP ALA SEQRES 5 B 231 GLY LEU GLY GLU PHE LEU SER ARG PRO ILE LYS ILE GLN SEQRES 6 B 231 GLN TYR GLN TRP THR PRO GLY VAL GLN LEU PHE GLN THR SEQRES 7 B 231 PHE ASN PRO TRP SER ASP TYR PHE GLY ASN ALA ASP VAL SEQRES 8 B 231 LEU GLU LYS ILE ASN ARG PHE ARG ASN LEU ARG CYS LYS SEQRES 9 B 231 LEU CYS LEU LYS VAL LEU ILE ASN GLY ASN SER PHE TYR SEQRES 10 B 231 TYR GLY ARG ALA LEU LEU SER TYR ASN PRO TYR LEU ARG SEQRES 11 B 231 ASN ASP GLN VAL THR VAL ASN ARG SER PHE PHE ILE GLN SEQRES 12 B 231 ASP LEU ILE ALA ALA SER ASN LYS PRO HIS ILE LEU LEU SEQRES 13 B 231 ASP PRO CYS SER SER GLU GLY GLY GLN MET CYS LEU PRO SEQRES 14 B 231 PHE ILE TRP PRO GLU ASN TYR LEU ASP ILE THR SER THR SEQRES 15 B 231 GLY TRP GLU ASP GLN MET GLY GLU CYS ILE ILE HIS ASP SEQRES 16 B 231 PHE ASP VAL LEU ARG HIS ALA ASN GLY GLY THR ASP PRO SEQRES 17 B 231 ILE THR VAL SER ILE PHE ALA TRP ALA GLU ASP VAL SER SEQRES 18 B 231 LEU LEU ILE PRO THR THR VAL ALA ALA GLN SEQRES 1 C 262 SER ARG PRO ALA VAL LEU SER ASP ILE GLN PRO TYR VAL SEQRES 2 C 262 PRO ARG TYR CYS GLY ASN LEU ALA ASN SER ASP ALA PRO SEQRES 3 C 262 GLU THR VAL ASN LYS LEU SER VAL ASP SER LYS ASN GLU SEQRES 4 C 262 LEU THR ILE ASP THR ARG THR MET GLY LEU GLY GLY ALA SEQRES 5 C 262 ASP GLU LEU THR ILE HIS SER ILE ALA SER ARG MET THR SEQRES 6 C 262 PHE TRP ARG GLN PHE ASP TRP PRO GLU SER ALA VAL THR SEQRES 7 C 262 ASP THR LEU LEU ALA SER MET SER VAL GLN PRO PHE CYS SEQRES 8 C 262 ILE ASP THR VAL THR ALA SER PRO VAL THR GLU ILE HIS SEQRES 9 C 262 SER THR ALA LEU ALA PHE ALA SER ALA PRO PHE GLU THR SEQRES 10 C 262 TRP GLN GLY SER ILE LYS PHE HIS PHE LYS VAL VAL CYS SEQRES 11 C 262 SER GLU TYR HIS ARG GLY ARG LEU ARG LEU VAL TYR ASN SEQRES 12 C 262 PRO LEU THR ASN ASN ALA GLY PRO VAL ALA PHE ASN GLN SEQRES 13 C 262 VAL TYR SER THR THR ILE ASP ILE SER ASN ASP ARG GLU SEQRES 14 C 262 PHE ASP TYR GLU CYS LYS TRP THR ASP ILE ARG ALA TRP SEQRES 15 C 262 ASN ALA CYS ILE GLY ILE ASP GLY ALA THR SER ALA THR SEQRES 16 C 262 PHE PHE ASN THR ALA ALA ALA VAL THR GLY GLY THR PRO SEQRES 17 C 262 PHE ASP ASN GLY THR LEU SER VAL TYR VAL VAL ASN GLU SEQRES 18 C 262 LEU ALA THR PRO SER THR ALA ALA ALA ASP VAL LYS VAL SEQRES 19 C 262 GLN VAL TRP VAL SER ALA GLY ASP ASP PHE ALA VAL ALA SEQRES 20 C 262 VAL PRO GLY VAL GLY LEU SER GLN LEU SER TYR PHE GLN SEQRES 21 C 262 GLN GLN SEQRES 1 D 51 GLU PHE LYS HIS ASP GLY LEU ILE SER LYS PRO ALA SER SEQRES 2 D 51 ALA VAL ALA LYS ALA ALA ASP ALA LEU SER MET ILE PRO SEQRES 3 D 51 TYR ILE ALA PRO TYR ALA LYS ALA THR SER MET VAL ALA SEQRES 4 D 51 ASP LYS ILE GLY LYS ILE ALA ARG ILE PHE GLY TYR HELIX 1 AA1 ALA A 622 LYS A 626 5 5 HELIX 2 AA2 GLU A 627 TYR A 631 5 5 HELIX 3 AA3 SER A 641 LEU A 646 1 6 HELIX 4 AA4 THR A 704 ALA A 710 1 7 HELIX 5 AA5 PRO A 711 PHE A 713 5 3 HELIX 6 AA6 VAL A 763 GLN A 771 1 9 HELIX 7 AA7 MET A 773 ARG A 777 5 5 HELIX 8 AA8 ASN B 81 PHE B 87 1 7 HELIX 9 AA9 PHE B 142 LEU B 146 5 5 HELIX 10 AB1 THR C 380 SER C 386 1 7 HELIX 11 AB2 THR C 430 ALA C 435 1 6 HELIX 12 AB3 GLY C 511 THR C 516 1 6 HELIX 13 AB4 ALA D 289 ASP D 293 5 5 SHEET 1 AA1 5 GLN A 650 TYR A 655 0 SHEET 2 AA1 5 LEU A 839 VAL A 845 -1 O GLN A 841 N LEU A 652 SHEET 3 AA1 5 LEU A 720 TRP A 724 -1 N LYS A 723 O PHE A 842 SHEET 4 AA1 5 ILE A 794 LEU A 796 -1 O LEU A 796 N LEU A 720 SHEET 5 AA1 5 ASN C 355 LYS C 356 1 O ASN C 355 N GLU A 795 SHEET 1 AA2 5 ALA A 752 PRO A 757 0 SHEET 2 AA2 5 ARG A 665 SER A 671 -1 N THR A 668 O THR A 754 SHEET 3 AA2 5 VAL A 822 ILE A 828 -1 O ILE A 828 N ARG A 665 SHEET 4 AA2 5 VAL A 737 ARG A 742 -1 N THR A 741 O GLU A 823 SHEET 5 AA2 5 THR A 781 PRO A 785 -1 O ALA A 782 N ALA A 740 SHEET 1 AA3 2 ASP A 686 GLY A 688 0 SHEET 2 AA3 2 SER A 696 TYR A 698 -1 O SER A 696 N GLY A 688 SHEET 1 AA4 3 HIS A 806 ALA A 807 0 SHEET 2 AA4 3 CYS A 715 ARG A 717 -1 N GLN A 716 O HIS A 806 SHEET 3 AA4 3 THR A 850 LEU A 851 -1 O THR A 850 N ARG A 717 SHEET 1 AA5 4 ILE C 416 ALA C 421 0 SHEET 2 AA5 4 VAL C 424 SER C 429 -1 O HIS C 428 N ASP C 417 SHEET 3 AA5 4 ILE A 859 PHE A 862 -1 N MET A 860 O ILE C 427 SHEET 4 AA5 4 LEU C 580 SER C 581 -1 O SER C 581 N TYR A 861 SHEET 1 AA6 2 THR B 11 LYS B 14 0 SHEET 2 AA6 2 TRP B 33 ASP B 36 -1 O ASP B 36 N THR B 11 SHEET 1 AA7 2 ASN B 18 THR B 20 0 SHEET 2 AA7 2 HIS B 25 VAL B 27 -1 O PHE B 26 N THR B 19 SHEET 1 AA8 4 ILE B 63 TRP B 70 0 SHEET 2 AA8 4 ILE B 210 ALA B 218 -1 O ILE B 214 N GLN B 66 SHEET 3 AA8 4 LEU B 106 ILE B 112 -1 N LEU B 111 O SER B 213 SHEET 4 AA8 4 GLN B 166 MET B 167 -1 O MET B 167 N LEU B 108 SHEET 1 AA9 4 GLN B 78 PHE B 80 0 SHEET 2 AA9 4 GLU B 191 ASP B 196 -1 O CYS B 192 N PHE B 80 SHEET 3 AA9 4 ALA B 122 ASN B 127 -1 N ASN B 127 O GLU B 191 SHEET 4 AA9 4 HIS B 154 LEU B 157 -1 O ILE B 155 N LEU B 124 SHEET 1 AB1 2 TYR B 118 TYR B 119 0 SHEET 2 AB1 2 ARG B 201 HIS B 202 -1 O ARG B 201 N TYR B 119 SHEET 1 AB2 4 THR C 389 TRP C 396 0 SHEET 2 AB2 4 VAL C 556 ALA C 564 -1 O VAL C 560 N ARG C 392 SHEET 3 AB2 4 ILE C 446 VAL C 453 -1 N VAL C 453 O LYS C 557 SHEET 4 AB2 4 GLU C 493 CYS C 498 -1 O PHE C 494 N PHE C 450 SHEET 1 AB3 3 LEU C 405 SER C 410 0 SHEET 2 AB3 3 THR C 537 ALA C 547 -1 O LEU C 538 N MET C 409 SHEET 3 AB3 3 ARG C 459 ASN C 467 -1 N ARG C 461 O VAL C 543 SHEET 1 AB4 3 ASN C 507 ALA C 508 0 SHEET 2 AB4 3 PHE C 439 GLN C 443 -1 N TRP C 442 O ASN C 507 SHEET 3 AB4 3 ALA C 569 PRO C 573 -1 O ALA C 571 N THR C 441 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000