HEADER HYDROLASE 10-AUG-19 6SIJ TITLE SAD STRUCTURE OF HEN EGG WHITE LYSOZYME RECOVERED BY CONTINUOUS TITLE 2 ROTATION DATA COLLECTION AND MULTIVARIATE ANALYSIS OF FRIEDEL PAIRS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS MULTIVARIATE ANALYSIS, SINGLE-WAVELENGTH X-RAY ANOMALOUS DIFFRACTION, KEYWDS 2 CONTINUOUS ROTATION, HEN EGG WHITE LYSOZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.GARCIA-BONETE,G.KATONA REVDAT 2 13-NOV-19 6SIJ 1 JRNL REVDAT 1 06-NOV-19 6SIJ 0 JRNL AUTH M.J.GARCIA-BONETE,G.KATONA JRNL TITL BAYESIAN MACHINE LEARNING IMPROVES SINGLE-WAVELENGTH JRNL TITL 2 ANOMALOUS DIFFRACTION PHASING. JRNL REF ACTA CRYSTALLOGR.,SECT.A V. 75 851 2019 JRNL REFN ESSN 2053-2733 JRNL PMID 31692460 JRNL DOI 10.1107/S2053273319011446 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.050 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 28589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.904 REMARK 3 FREE R VALUE TEST SET COUNT : 1402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5000 - 3.4683 0.99 2737 144 0.1421 0.1615 REMARK 3 2 3.4683 - 2.7531 0.99 2720 140 0.1407 0.1652 REMARK 3 3 2.7531 - 2.4052 0.99 2720 137 0.1474 0.1595 REMARK 3 4 2.4052 - 2.1853 0.99 2734 127 0.1278 0.1400 REMARK 3 5 2.1853 - 2.0287 0.99 2723 143 0.1328 0.1570 REMARK 3 6 2.0287 - 1.9091 0.99 2760 132 0.1317 0.1685 REMARK 3 7 1.9091 - 1.8134 0.99 2694 135 0.1408 0.1980 REMARK 3 8 1.8134 - 1.7345 0.98 2748 128 0.1547 0.1902 REMARK 3 9 1.7345 - 1.6677 0.98 2671 162 0.1427 0.2056 REMARK 3 10 1.6677 - 1.6102 0.98 2680 154 0.1595 0.1936 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.204 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1088 REMARK 3 ANGLE : 0.819 1468 REMARK 3 CHIRALITY : 0.055 149 REMARK 3 PLANARITY : 0.005 194 REMARK 3 DIHEDRAL : 9.228 649 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.6618 33.3275 27.7465 REMARK 3 T TENSOR REMARK 3 T11: 0.0983 T22: 0.0776 REMARK 3 T33: 0.1277 T12: -0.0184 REMARK 3 T13: 0.0252 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 1.8905 L22: 4.1125 REMARK 3 L33: 4.0047 L12: -1.8587 REMARK 3 L13: -1.0973 L23: 0.0540 REMARK 3 S TENSOR REMARK 3 S11: -0.0744 S12: -0.0377 S13: -0.2276 REMARK 3 S21: 0.1687 S22: 0.0236 S23: 0.1510 REMARK 3 S31: 0.1261 S32: -0.1218 S33: 0.0370 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.0220 28.0110 16.4694 REMARK 3 T TENSOR REMARK 3 T11: 0.1193 T22: 0.0519 REMARK 3 T33: 0.1370 T12: 0.0081 REMARK 3 T13: -0.0014 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 6.1799 L22: 2.8267 REMARK 3 L33: 1.4121 L12: 0.1820 REMARK 3 L13: 0.0052 L23: -0.2055 REMARK 3 S TENSOR REMARK 3 S11: 0.1690 S12: 0.1476 S13: -0.4772 REMARK 3 S21: 0.1457 S22: -0.1406 S23: 0.0719 REMARK 3 S31: 0.1747 S32: -0.0946 S33: 0.0132 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.5780 45.0375 20.6489 REMARK 3 T TENSOR REMARK 3 T11: 0.0501 T22: 0.0529 REMARK 3 T33: 0.0678 T12: -0.0045 REMARK 3 T13: 0.0106 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.8071 L22: 1.3758 REMARK 3 L33: 0.9541 L12: -0.6413 REMARK 3 L13: 0.0489 L23: -0.2303 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: 0.1301 S13: 0.0898 REMARK 3 S21: 0.0778 S22: 0.0289 S23: -0.0990 REMARK 3 S31: -0.1071 S32: 0.0373 S33: 0.0334 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9330 47.2263 11.2665 REMARK 3 T TENSOR REMARK 3 T11: 0.0759 T22: 0.0816 REMARK 3 T33: 0.0606 T12: 0.0141 REMARK 3 T13: 0.0092 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.5581 L22: 2.5253 REMARK 3 L33: 1.4755 L12: -0.8006 REMARK 3 L13: -0.0549 L23: 1.5999 REMARK 3 S TENSOR REMARK 3 S11: 0.1374 S12: 0.2658 S13: 0.0730 REMARK 3 S21: -0.3225 S22: -0.1613 S23: -0.0151 REMARK 3 S31: -0.0126 S32: 0.1368 S33: -0.0072 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.7955 39.8369 12.6771 REMARK 3 T TENSOR REMARK 3 T11: 0.0739 T22: 0.0518 REMARK 3 T33: 0.0687 T12: 0.0037 REMARK 3 T13: -0.0061 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.4390 L22: 1.1128 REMARK 3 L33: 0.6871 L12: -1.0579 REMARK 3 L13: 0.3986 L23: 0.0369 REMARK 3 S TENSOR REMARK 3 S11: 0.1079 S12: 0.1565 S13: -0.0899 REMARK 3 S21: -0.0965 S22: -0.1033 S23: 0.0800 REMARK 3 S31: -0.0486 S32: -0.0317 S33: 0.0056 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.9021 34.2425 26.1393 REMARK 3 T TENSOR REMARK 3 T11: 0.0900 T22: 0.0805 REMARK 3 T33: 0.1003 T12: 0.0233 REMARK 3 T13: -0.0096 T23: 0.0229 REMARK 3 L TENSOR REMARK 3 L11: 4.8179 L22: 0.7575 REMARK 3 L33: 5.1498 L12: 1.1855 REMARK 3 L13: -1.6663 L23: -0.8645 REMARK 3 S TENSOR REMARK 3 S11: 0.0255 S12: -0.3055 S13: -0.3350 REMARK 3 S21: -0.0416 S22: -0.1306 S23: -0.1497 REMARK 3 S31: 0.5046 S32: 0.3767 S33: 0.0755 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.0777 26.4373 32.7379 REMARK 3 T TENSOR REMARK 3 T11: 0.2112 T22: 0.1384 REMARK 3 T33: 0.2463 T12: -0.0219 REMARK 3 T13: -0.0476 T23: 0.1064 REMARK 3 L TENSOR REMARK 3 L11: 5.8459 L22: 8.8237 REMARK 3 L33: 8.8769 L12: 5.0216 REMARK 3 L13: -5.0868 L23: -3.1776 REMARK 3 S TENSOR REMARK 3 S11: -0.1153 S12: -0.2527 S13: -0.5145 REMARK 3 S21: 0.1086 S22: 0.0056 S23: 0.0746 REMARK 3 S31: 0.3300 S32: -0.0325 S33: 0.1302 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103771. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54980 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28771 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 39.535 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 39.20 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.22300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: TETRAGONAL LYSOZYME CRYSTALS, SIZE 200 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM NA ACETATE PH 4.5 1M NACL 25% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.49000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.53500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.73500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.53500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.24500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.53500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.73500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.53500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.24500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.49000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 351 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 400 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 469 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 LEU A 9 REMARK 465 CYS A 10 REMARK 465 PHE A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 GLY A 18 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 78 O REMARK 620 2 CYS A 82 O 87.8 REMARK 620 3 SER A 90 OG 90.1 168.8 REMARK 620 4 ARG A 91 O 93.7 89.8 101.3 REMARK 620 5 HOH A 398 O 172.8 98.9 82.8 88.9 REMARK 620 6 HOH A 387 O 98.8 86.7 82.7 166.9 79.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 214 DBREF 6SIJ A 1 147 UNP P00698 LYSC_CHICK 1 147 SEQRES 1 A 147 MET ARG SER LEU LEU ILE LEU VAL LEU CYS PHE LEU PRO SEQRES 2 A 147 LEU ALA ALA LEU GLY LYS VAL PHE GLY ARG CYS GLU LEU SEQRES 3 A 147 ALA ALA ALA MET LYS ARG HIS GLY LEU ASP ASN TYR ARG SEQRES 4 A 147 GLY TYR SER LEU GLY ASN TRP VAL CYS ALA ALA LYS PHE SEQRES 5 A 147 GLU SER ASN PHE ASN THR GLN ALA THR ASN ARG ASN THR SEQRES 6 A 147 ASP GLY SER THR ASP TYR GLY ILE LEU GLN ILE ASN SER SEQRES 7 A 147 ARG TRP TRP CYS ASN ASP GLY ARG THR PRO GLY SER ARG SEQRES 8 A 147 ASN LEU CYS ASN ILE PRO CYS SER ALA LEU LEU SER SER SEQRES 9 A 147 ASP ILE THR ALA SER VAL ASN CYS ALA LYS LYS ILE VAL SEQRES 10 A 147 SER ASP GLY ASN GLY MET ASN ALA TRP VAL ALA TRP ARG SEQRES 11 A 147 ASN ARG CYS LYS GLY THR ASP VAL GLN ALA TRP ILE ARG SEQRES 12 A 147 GLY CYS ARG LEU HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET ACT A 204 4 HET ACT A 205 4 HET NA A 206 1 HET CL A 207 1 HET CL A 208 1 HET CL A 209 1 HET CL A 210 1 HET CL A 211 1 HET CL A 212 1 HET CL A 213 1 HET CL A 214 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 NA NA 1+ FORMUL 8 CL 8(CL 1-) FORMUL 16 HOH *174(H2 O) HELIX 1 AA1 GLY A 22 HIS A 33 1 12 HELIX 2 AA2 ASN A 37 TYR A 41 5 5 HELIX 3 AA3 SER A 42 ASN A 55 1 14 HELIX 4 AA4 PRO A 97 SER A 103 5 7 HELIX 5 AA5 ILE A 106 SER A 118 1 13 HELIX 6 AA6 ASN A 121 ALA A 125 5 5 HELIX 7 AA7 TRP A 126 CYS A 133 1 8 HELIX 8 AA8 ASP A 137 ARG A 143 5 7 SHEET 1 AA1 3 THR A 61 ARG A 63 0 SHEET 2 AA1 3 THR A 69 TYR A 71 -1 O ASP A 70 N ASN A 62 SHEET 3 AA1 3 ILE A 76 ASN A 77 -1 O ILE A 76 N TYR A 71 SSBOND 1 CYS A 24 CYS A 145 1555 1555 2.02 SSBOND 2 CYS A 48 CYS A 133 1555 1555 2.04 SSBOND 3 CYS A 82 CYS A 98 1555 1555 2.04 SSBOND 4 CYS A 94 CYS A 112 1555 1555 2.03 LINK O SER A 78 NA NA A 206 1555 1555 2.34 LINK O CYS A 82 NA NA A 206 1555 1555 2.48 LINK OG SER A 90 NA NA A 206 1555 1555 2.47 LINK O ARG A 91 NA NA A 206 1555 1555 2.45 LINK NA NA A 206 O HOH A 398 1555 1555 2.31 LINK NA NA A 206 O HOH A 387 1555 1555 2.41 SITE 1 AC1 9 GLN A 75 ASN A 77 TRP A 81 ALA A 125 SITE 2 AC1 9 TRP A 126 HOH A 336 HOH A 373 HOH A 388 SITE 3 AC1 9 HOH A 406 SITE 1 AC2 2 HOH A 302 HOH A 320 SITE 1 AC3 5 ARG A 79 TRP A 80 GLY A 89 ARG A 91 SITE 2 AC3 5 HOH A 353 SITE 1 AC4 2 TRP A 80 ASP A 119 SITE 1 AC5 5 GLY A 40 GLU A 53 ASN A 62 HOH A 343 SITE 2 AC5 5 HOH A 350 SITE 1 AC6 6 SER A 78 CYS A 82 SER A 90 ARG A 91 SITE 2 AC6 6 HOH A 387 HOH A 398 SITE 1 AC7 1 LYS A 51 SITE 1 AC8 2 ASN A 83 PRO A 97 SITE 1 AC9 2 ARG A 91 ASN A 92 SITE 1 AD1 2 ILE A 106 HOH A 454 SITE 1 AD2 5 ASN A 83 GLY A 85 ARG A 86 THR A 87 SITE 2 AD2 5 SER A 90 SITE 1 AD3 4 SER A 42 GLY A 44 GLN A 139 HOH A 436 SITE 1 AD4 2 TYR A 41 ASN A 131 SITE 1 AD5 3 ASP A 36 SER A 42 LEU A 43 CRYST1 79.070 79.070 36.980 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012647 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027042 0.00000