HEADER HYDROLASE 10-AUG-19 6SIK TITLE SAD STRUCTURE OF HEN EGG WHITE LYSOZYME RECOVERED BY CONTINUOUS TITLE 2 ROTATION DATA COLLECTION AND UNIVARIATE ANALYSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS UNIVARIATE ANALYSIS, SINGLE-WAVELENGTH X-RAY ANOMALOUS DIFFRACTION, KEYWDS 2 CONTINUOUS ROTATION, HEN EGG WHITE LYSOZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.GARCIA-BONETE,G.KATONA REVDAT 2 13-NOV-19 6SIK 1 JRNL REVDAT 1 06-NOV-19 6SIK 0 JRNL AUTH M.J.GARCIA-BONETE,G.KATONA JRNL TITL BAYESIAN MACHINE LEARNING IMPROVES SINGLE-WAVELENGTH JRNL TITL 2 ANOMALOUS DIFFRACTION PHASING. JRNL REF ACTA CRYSTALLOGR.,SECT.A V. 75 851 2019 JRNL REFN ESSN 2053-2733 JRNL PMID 31692460 JRNL DOI 10.1107/S2053273319011446 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.334 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.024 REMARK 3 FREE R VALUE TEST SET COUNT : 1445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4000 - 3.4681 1.00 2736 144 0.1372 0.1619 REMARK 3 2 3.4681 - 2.7529 1.00 2751 149 0.1383 0.1384 REMARK 3 3 2.7529 - 2.4050 1.00 2721 146 0.1487 0.1714 REMARK 3 4 2.4050 - 2.1851 1.00 2734 144 0.1301 0.1456 REMARK 3 5 2.1851 - 2.0285 1.00 2728 141 0.1338 0.1566 REMARK 3 6 2.0285 - 1.9089 1.00 2749 144 0.1299 0.1725 REMARK 3 7 1.9089 - 1.8133 1.00 2731 146 0.1346 0.1703 REMARK 3 8 1.8133 - 1.7344 1.00 2736 143 0.1502 0.2023 REMARK 3 9 1.7344 - 1.6676 1.00 2712 145 0.1465 0.1920 REMARK 3 10 1.6676 - 1.6101 0.99 2718 143 0.1652 0.1882 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.107 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.899 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1088 REMARK 3 ANGLE : 0.804 1468 REMARK 3 CHIRALITY : 0.054 149 REMARK 3 PLANARITY : 0.004 194 REMARK 3 DIHEDRAL : 9.533 649 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6575 33.9078 1.1155 REMARK 3 T TENSOR REMARK 3 T11: 0.1190 T22: 0.0903 REMARK 3 T33: 0.1225 T12: 0.0132 REMARK 3 T13: 0.0146 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 0.3859 L22: 0.7366 REMARK 3 L33: 1.0430 L12: 0.2623 REMARK 3 L13: -0.2886 L23: -0.0420 REMARK 3 S TENSOR REMARK 3 S11: -0.0593 S12: -0.0244 S13: -0.1682 REMARK 3 S21: -0.1337 S22: 0.0167 S23: -0.0725 REMARK 3 S31: 0.1280 S32: 0.0543 S33: 0.0061 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6995 29.4580 10.7427 REMARK 3 T TENSOR REMARK 3 T11: 0.1201 T22: 0.0619 REMARK 3 T33: 0.1281 T12: -0.0030 REMARK 3 T13: 0.0026 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.3848 L22: 0.4403 REMARK 3 L33: 0.8116 L12: 0.2308 REMARK 3 L13: 0.6593 L23: -0.3337 REMARK 3 S TENSOR REMARK 3 S11: 0.1351 S12: -0.0208 S13: -0.3635 REMARK 3 S21: -0.1144 S22: -0.0614 S23: -0.0305 REMARK 3 S31: 0.2257 S32: 0.0016 S33: -0.1610 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8231 40.0022 3.9266 REMARK 3 T TENSOR REMARK 3 T11: 0.0690 T22: 0.0697 REMARK 3 T33: 0.0853 T12: -0.0095 REMARK 3 T13: 0.0029 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.1633 L22: 0.2745 REMARK 3 L33: 0.1456 L12: 0.1164 REMARK 3 L13: -0.0623 L23: 0.0512 REMARK 3 S TENSOR REMARK 3 S11: -0.0389 S12: -0.0496 S13: -0.0013 REMARK 3 S21: -0.0909 S22: 0.0238 S23: -0.0123 REMARK 3 S31: -0.0228 S32: -0.0070 S33: 0.0128 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1276 52.5679 13.2733 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.1657 REMARK 3 T33: 0.1230 T12: 0.0188 REMARK 3 T13: 0.0340 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 1.3549 L22: 0.4539 REMARK 3 L33: 0.5504 L12: 0.3999 REMARK 3 L13: 0.4033 L23: 0.0565 REMARK 3 S TENSOR REMARK 3 S11: 0.0687 S12: -0.3956 S13: 0.3496 REMARK 3 S21: -0.0095 S22: -0.0587 S23: 0.1430 REMARK 3 S31: -0.1582 S32: -0.2861 S33: 0.0591 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7517 45.0788 10.9295 REMARK 3 T TENSOR REMARK 3 T11: 0.0757 T22: 0.0684 REMARK 3 T33: 0.0552 T12: -0.0040 REMARK 3 T13: 0.0004 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 3.4719 L22: 5.5333 REMARK 3 L33: 2.7785 L12: 3.1767 REMARK 3 L13: 1.7706 L23: 1.0701 REMARK 3 S TENSOR REMARK 3 S11: 0.0552 S12: -0.1201 S13: -0.0955 REMARK 3 S21: -0.0074 S22: -0.0085 S23: -0.0044 REMARK 3 S31: 0.1536 S32: -0.1287 S33: -0.0541 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8323 47.3669 18.9685 REMARK 3 T TENSOR REMARK 3 T11: 0.1235 T22: 0.1325 REMARK 3 T33: 0.0774 T12: -0.0273 REMARK 3 T13: 0.0085 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.7756 L22: 1.2405 REMARK 3 L33: 0.1239 L12: 0.3920 REMARK 3 L13: -0.1014 L23: -0.3795 REMARK 3 S TENSOR REMARK 3 S11: 0.1572 S12: -0.1505 S13: 0.1028 REMARK 3 S21: 0.4243 S22: -0.1674 S23: -0.0482 REMARK 3 S31: -0.0488 S32: -0.1202 S33: 0.0874 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5418 39.6456 15.3724 REMARK 3 T TENSOR REMARK 3 T11: 0.0860 T22: 0.0876 REMARK 3 T33: 0.0945 T12: -0.0133 REMARK 3 T13: -0.0040 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.6534 L22: 0.7723 REMARK 3 L33: 0.4362 L12: 0.5032 REMARK 3 L13: 0.0972 L23: -0.3603 REMARK 3 S TENSOR REMARK 3 S11: 0.1088 S12: -0.1405 S13: -0.1746 REMARK 3 S21: 0.1523 S22: -0.1200 S23: -0.1983 REMARK 3 S31: 0.0046 S32: 0.0585 S33: -0.0101 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.7523 40.4041 13.6048 REMARK 3 T TENSOR REMARK 3 T11: 0.0967 T22: 0.0702 REMARK 3 T33: 0.0817 T12: -0.0019 REMARK 3 T13: -0.0057 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.5583 L22: 0.4357 REMARK 3 L33: 0.3729 L12: 0.2569 REMARK 3 L13: 0.3945 L23: 0.1119 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: -0.1792 S13: 0.0320 REMARK 3 S21: 0.1124 S22: -0.0716 S23: 0.1175 REMARK 3 S31: -0.1461 S32: -0.1143 S33: 0.0553 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2853 31.7064 0.6650 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.1016 REMARK 3 T33: 0.1684 T12: 0.0075 REMARK 3 T13: -0.0230 T23: -0.0417 REMARK 3 L TENSOR REMARK 3 L11: 0.9693 L22: 0.3059 REMARK 3 L33: 0.6749 L12: -0.3854 REMARK 3 L13: -0.2915 L23: -0.1677 REMARK 3 S TENSOR REMARK 3 S11: 0.1040 S12: 0.2612 S13: -0.4591 REMARK 3 S21: -0.0355 S22: -0.1167 S23: -0.0216 REMARK 3 S31: 0.3729 S32: -0.1136 S33: -0.0690 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103772. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54980 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28771 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 39.435 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 39.20 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.5300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.22300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.840 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: TETRAGONAL LYSOZYME CRYSTALS, SIZE 200 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM NA ACETATE PH 4.5 1M NACL 25% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.44000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.43500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.43500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.66000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.43500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.43500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.22000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.43500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.43500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.66000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.43500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.43500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.22000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.44000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 332 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 472 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 LEU A 9 REMARK 465 CYS A 10 REMARK 465 PHE A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 GLY A 18 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 78 O REMARK 620 2 CYS A 82 O 87.8 REMARK 620 3 SER A 90 OG 90.9 168.4 REMARK 620 4 ARG A 91 O 94.1 89.3 102.3 REMARK 620 5 HOH A 379 O 98.7 86.6 82.2 166.3 REMARK 620 6 HOH A 393 O 173.3 98.3 82.5 88.6 79.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 214 DBREF 6SIK A 1 147 UNP P00698 LYSC_CHICK 1 147 SEQRES 1 A 147 MET ARG SER LEU LEU ILE LEU VAL LEU CYS PHE LEU PRO SEQRES 2 A 147 LEU ALA ALA LEU GLY LYS VAL PHE GLY ARG CYS GLU LEU SEQRES 3 A 147 ALA ALA ALA MET LYS ARG HIS GLY LEU ASP ASN TYR ARG SEQRES 4 A 147 GLY TYR SER LEU GLY ASN TRP VAL CYS ALA ALA LYS PHE SEQRES 5 A 147 GLU SER ASN PHE ASN THR GLN ALA THR ASN ARG ASN THR SEQRES 6 A 147 ASP GLY SER THR ASP TYR GLY ILE LEU GLN ILE ASN SER SEQRES 7 A 147 ARG TRP TRP CYS ASN ASP GLY ARG THR PRO GLY SER ARG SEQRES 8 A 147 ASN LEU CYS ASN ILE PRO CYS SER ALA LEU LEU SER SER SEQRES 9 A 147 ASP ILE THR ALA SER VAL ASN CYS ALA LYS LYS ILE VAL SEQRES 10 A 147 SER ASP GLY ASN GLY MET ASN ALA TRP VAL ALA TRP ARG SEQRES 11 A 147 ASN ARG CYS LYS GLY THR ASP VAL GLN ALA TRP ILE ARG SEQRES 12 A 147 GLY CYS ARG LEU HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET ACT A 204 4 HET ACT A 205 4 HET NA A 206 1 HET CL A 207 1 HET CL A 208 1 HET CL A 209 1 HET CL A 210 1 HET CL A 211 1 HET CL A 212 1 HET CL A 213 1 HET CL A 214 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 NA NA 1+ FORMUL 8 CL 8(CL 1-) FORMUL 16 HOH *179(H2 O) HELIX 1 AA1 GLY A 22 HIS A 33 1 12 HELIX 2 AA2 ASN A 37 TYR A 41 5 5 HELIX 3 AA3 SER A 42 ASN A 55 1 14 HELIX 4 AA4 PRO A 97 SER A 103 5 7 HELIX 5 AA5 ILE A 106 SER A 118 1 13 HELIX 6 AA6 ASN A 121 ALA A 125 5 5 HELIX 7 AA7 TRP A 126 CYS A 133 1 8 HELIX 8 AA8 ASP A 137 ARG A 143 5 7 SHEET 1 AA1 3 THR A 61 ARG A 63 0 SHEET 2 AA1 3 THR A 69 TYR A 71 -1 O ASP A 70 N ASN A 62 SHEET 3 AA1 3 ILE A 76 ASN A 77 -1 O ILE A 76 N TYR A 71 SSBOND 1 CYS A 24 CYS A 145 1555 1555 2.02 SSBOND 2 CYS A 48 CYS A 133 1555 1555 2.04 SSBOND 3 CYS A 82 CYS A 98 1555 1555 2.04 SSBOND 4 CYS A 94 CYS A 112 1555 1555 2.03 LINK O SER A 78 NA NA A 206 1555 1555 2.34 LINK O CYS A 82 NA NA A 206 1555 1555 2.48 LINK OG SER A 90 NA NA A 206 1555 1555 2.47 LINK O ARG A 91 NA NA A 206 1555 1555 2.45 LINK NA NA A 206 O HOH A 379 1555 1555 2.41 LINK NA NA A 206 O HOH A 393 1555 1555 2.32 SITE 1 AC1 10 GLN A 75 ILE A 76 ASN A 77 TRP A 81 SITE 2 AC1 10 ALA A 125 TRP A 126 HOH A 333 HOH A 359 SITE 3 AC1 10 HOH A 374 HOH A 403 SITE 1 AC2 2 ARG A 23 HOH A 302 SITE 1 AC3 5 ARG A 79 TRP A 80 GLY A 89 ARG A 91 SITE 2 AC3 5 HOH A 312 SITE 1 AC4 2 TRP A 80 ASP A 119 SITE 1 AC5 4 GLU A 53 ASN A 62 HOH A 338 HOH A 348 SITE 1 AC6 6 SER A 78 CYS A 82 SER A 90 ARG A 91 SITE 2 AC6 6 HOH A 379 HOH A 393 SITE 1 AC7 2 LYS A 51 PHE A 56 SITE 1 AC8 3 ASN A 83 PRO A 97 HOH A 446 SITE 1 AC9 2 ARG A 91 ASN A 92 SITE 1 AD1 2 ILE A 106 HOH A 452 SITE 1 AD2 5 ASN A 83 GLY A 85 ARG A 86 THR A 87 SITE 2 AD2 5 SER A 90 SITE 1 AD3 4 SER A 42 GLY A 44 GLN A 139 HOH A 433 SITE 1 AD4 2 TYR A 41 ASN A 131 SITE 1 AD5 2 SER A 42 LEU A 43 CRYST1 78.870 78.870 36.880 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012679 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012679 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027115 0.00000