HEADER HYDROLASE 10-AUG-19 6SIL TITLE SAD STRUCTURE OF HEN EGG WHITE LYSOZYME RECOVERED BY INVERSE BEAM TITLE 2 GEOMETRY DATA COLLECTION AND MULTIVARIATE ANALYSIS OF FRIEDEL PAIRS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS MULTIVARIATE ANALYSIS, SINGLE-WAVELENGTH X-RAY ANOMALOUS DIFFRACTION, KEYWDS 2 INVERSE BEAM GEOMETRY COLLECTION, HEN EGG WHITE LYSOZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.GARCIA-BONETE,G.KATONA REVDAT 2 13-NOV-19 6SIL 1 JRNL REVDAT 1 06-NOV-19 6SIL 0 JRNL AUTH M.J.GARCIA-BONETE,G.KATONA JRNL TITL BAYESIAN MACHINE LEARNING IMPROVES SINGLE-WAVELENGTH JRNL TITL 2 ANOMALOUS DIFFRACTION PHASING. JRNL REF ACTA CRYSTALLOGR.,SECT.A V. 75 851 2019 JRNL REFN ESSN 2053-2733 JRNL PMID 31692460 JRNL DOI 10.1107/S2053273319011446 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 27739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.849 REMARK 3 FREE R VALUE TEST SET COUNT : 1345 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5300 - 3.4683 0.99 2737 140 0.1399 0.1566 REMARK 3 2 3.4683 - 2.7531 0.98 2707 140 0.1412 0.1654 REMARK 3 3 2.7531 - 2.4052 0.99 2727 135 0.1501 0.1696 REMARK 3 4 2.4052 - 2.1853 0.99 2731 127 0.1344 0.1509 REMARK 3 5 2.1853 - 2.0287 0.99 2729 139 0.1333 0.1461 REMARK 3 6 2.0287 - 1.9091 0.99 2770 134 0.1323 0.1907 REMARK 3 7 1.9091 - 1.8134 0.98 2688 135 0.1404 0.1923 REMARK 3 8 1.8134 - 1.7345 0.99 2761 126 0.1602 0.2013 REMARK 3 9 1.7345 - 1.6677 0.98 2663 159 0.1626 0.2044 REMARK 3 10 1.6677 - 1.6102 0.69 1881 110 0.2134 0.2182 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.133 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.127 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.62 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1104 REMARK 3 ANGLE : 0.782 1495 REMARK 3 CHIRALITY : 0.053 151 REMARK 3 PLANARITY : 0.004 200 REMARK 3 DIHEDRAL : 9.581 660 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9866 46.2529 27.7029 REMARK 3 T TENSOR REMARK 3 T11: 0.1273 T22: 0.1027 REMARK 3 T33: 0.1489 T12: -0.0269 REMARK 3 T13: -0.0140 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 3.4117 L22: 8.1522 REMARK 3 L33: 4.6312 L12: -3.5259 REMARK 3 L13: 1.8169 L23: -2.2535 REMARK 3 S TENSOR REMARK 3 S11: -0.0439 S12: -0.0214 S13: 0.2324 REMARK 3 S21: 0.1913 S22: -0.0413 S23: -0.1309 REMARK 3 S31: -0.1726 S32: 0.1674 S33: 0.0840 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6543 51.3473 15.9975 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: 0.0860 REMARK 3 T33: 0.1483 T12: 0.0149 REMARK 3 T13: 0.0015 T23: 0.0277 REMARK 3 L TENSOR REMARK 3 L11: 7.0939 L22: 5.3238 REMARK 3 L33: 1.1484 L12: 2.6762 REMARK 3 L13: 0.2520 L23: 0.5303 REMARK 3 S TENSOR REMARK 3 S11: 0.1029 S12: 0.0590 S13: 0.4304 REMARK 3 S21: 0.1357 S22: -0.1309 S23: 0.0126 REMARK 3 S31: -0.1104 S32: 0.0712 S33: 0.0375 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4383 34.3134 20.7436 REMARK 3 T TENSOR REMARK 3 T11: 0.0675 T22: 0.0671 REMARK 3 T33: 0.0861 T12: -0.0073 REMARK 3 T13: -0.0069 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.5947 L22: 1.7645 REMARK 3 L33: 1.5536 L12: -0.8883 REMARK 3 L13: -0.0011 L23: 0.4093 REMARK 3 S TENSOR REMARK 3 S11: -0.0058 S12: 0.1039 S13: -0.1137 REMARK 3 S21: 0.0749 S22: 0.0274 S23: 0.0741 REMARK 3 S31: 0.1347 S32: -0.0397 S33: 0.0018 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8214 34.3839 17.3603 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: 0.0615 REMARK 3 T33: 0.0617 T12: 0.0049 REMARK 3 T13: -0.0036 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 7.2655 L22: 6.9269 REMARK 3 L33: 6.3762 L12: -5.6077 REMARK 3 L13: -4.0763 L23: 3.1043 REMARK 3 S TENSOR REMARK 3 S11: 0.0644 S12: 0.1395 S13: 0.1161 REMARK 3 S21: -0.0586 S22: -0.0445 S23: 0.0314 REMARK 3 S31: -0.2265 S32: -0.1227 S33: 0.0094 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9434 30.5887 7.8327 REMARK 3 T TENSOR REMARK 3 T11: 0.1483 T22: 0.1511 REMARK 3 T33: 0.1211 T12: 0.0204 REMARK 3 T13: -0.0087 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 5.6625 L22: 3.8082 REMARK 3 L33: 2.8353 L12: -4.3550 REMARK 3 L13: 2.6358 L23: -2.6915 REMARK 3 S TENSOR REMARK 3 S11: 0.3527 S12: 0.2376 S13: -0.3256 REMARK 3 S21: -0.6406 S22: -0.2490 S23: 0.1866 REMARK 3 S31: 0.1486 S32: -0.1677 S33: -0.1160 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5530 36.2456 10.8089 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.1142 REMARK 3 T33: 0.1335 T12: 0.0219 REMARK 3 T13: 0.0198 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.7087 L22: 3.4875 REMARK 3 L33: 4.0767 L12: -0.5541 REMARK 3 L13: -0.4974 L23: 0.5723 REMARK 3 S TENSOR REMARK 3 S11: 0.1460 S12: 0.1307 S13: 0.1999 REMARK 3 S21: -0.2933 S22: -0.1511 S23: -0.2399 REMARK 3 S31: -0.0736 S32: -0.0029 S33: 0.0068 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3211 44.4708 12.6678 REMARK 3 T TENSOR REMARK 3 T11: 0.0997 T22: 0.0770 REMARK 3 T33: 0.1124 T12: 0.0006 REMARK 3 T13: 0.0419 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 7.2607 L22: 4.3678 REMARK 3 L33: 6.7829 L12: -1.3861 REMARK 3 L13: 6.9427 L23: -0.5593 REMARK 3 S TENSOR REMARK 3 S11: -0.0933 S12: 0.2145 S13: 0.2200 REMARK 3 S21: -0.0666 S22: -0.0174 S23: -0.1669 REMARK 3 S31: -0.2835 S32: 0.2403 S33: 0.0981 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8164 39.3990 14.5144 REMARK 3 T TENSOR REMARK 3 T11: 0.0864 T22: 0.0672 REMARK 3 T33: 0.1036 T12: 0.0064 REMARK 3 T13: -0.0002 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 3.6044 L22: 4.5307 REMARK 3 L33: 6.7266 L12: 0.4237 REMARK 3 L13: -0.7090 L23: -3.6435 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: 0.2691 S13: -0.1094 REMARK 3 S21: -0.2054 S22: -0.0363 S23: 0.1176 REMARK 3 S31: 0.3145 S32: -0.0997 S33: 0.0171 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6628 48.2692 28.9047 REMARK 3 T TENSOR REMARK 3 T11: 0.1551 T22: 0.1358 REMARK 3 T33: 0.1851 T12: 0.0082 REMARK 3 T13: 0.0255 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 4.6832 L22: 3.9688 REMARK 3 L33: 4.0763 L12: 3.5130 REMARK 3 L13: 3.4904 L23: 3.0105 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: -0.3083 S13: 0.5574 REMARK 3 S21: -0.0231 S22: -0.1176 S23: 0.1285 REMARK 3 S31: -0.4482 S32: -0.1830 S33: 0.1728 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103773. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54980 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28213 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 39.535 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 38.10 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM NA ACETATE PH 4.5 1M NACL 25% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.49000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.53500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.73500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.53500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.24500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.53500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.73500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.53500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.24500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.49000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 340 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 471 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 LEU A 9 REMARK 465 CYS A 10 REMARK 465 PHE A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 GLY A 18 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 78 O REMARK 620 2 CYS A 82 O 89.4 REMARK 620 3 SER A 90 OG 90.9 170.2 REMARK 620 4 ARG A 91 O 94.5 88.7 101.1 REMARK 620 5 HOH A 406 O 172.9 97.6 82.0 86.9 REMARK 620 6 HOH A 390 O 99.9 88.2 82.0 165.3 79.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 214 DBREF 6SIL A 1 147 UNP P00698 LYSC_CHICK 1 147 SEQRES 1 A 147 MET ARG SER LEU LEU ILE LEU VAL LEU CYS PHE LEU PRO SEQRES 2 A 147 LEU ALA ALA LEU GLY LYS VAL PHE GLY ARG CYS GLU LEU SEQRES 3 A 147 ALA ALA ALA MET LYS ARG HIS GLY LEU ASP ASN TYR ARG SEQRES 4 A 147 GLY TYR SER LEU GLY ASN TRP VAL CYS ALA ALA LYS PHE SEQRES 5 A 147 GLU SER ASN PHE ASN THR GLN ALA THR ASN ARG ASN THR SEQRES 6 A 147 ASP GLY SER THR ASP TYR GLY ILE LEU GLN ILE ASN SER SEQRES 7 A 147 ARG TRP TRP CYS ASN ASP GLY ARG THR PRO GLY SER ARG SEQRES 8 A 147 ASN LEU CYS ASN ILE PRO CYS SER ALA LEU LEU SER SER SEQRES 9 A 147 ASP ILE THR ALA SER VAL ASN CYS ALA LYS LYS ILE VAL SEQRES 10 A 147 SER ASP GLY ASN GLY MET ASN ALA TRP VAL ALA TRP ARG SEQRES 11 A 147 ASN ARG CYS LYS GLY THR ASP VAL GLN ALA TRP ILE ARG SEQRES 12 A 147 GLY CYS ARG LEU HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET ACT A 204 4 HET ACT A 205 4 HET NA A 206 1 HET CL A 207 1 HET CL A 208 1 HET CL A 209 1 HET CL A 210 1 HET CL A 211 1 HET CL A 212 1 HET CL A 213 1 HET CL A 214 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 NA NA 1+ FORMUL 8 CL 8(CL 1-) FORMUL 16 HOH *177(H2 O) HELIX 1 AA1 GLY A 22 HIS A 33 1 12 HELIX 2 AA2 ASN A 37 TYR A 41 5 5 HELIX 3 AA3 SER A 42 ASN A 55 1 14 HELIX 4 AA4 PRO A 97 SER A 103 5 7 HELIX 5 AA5 ILE A 106 SER A 118 1 13 HELIX 6 AA6 ASN A 121 ALA A 125 5 5 HELIX 7 AA7 TRP A 126 CYS A 133 1 8 HELIX 8 AA8 ASP A 137 ILE A 142 5 6 SHEET 1 AA1 3 THR A 61 ARG A 63 0 SHEET 2 AA1 3 THR A 69 TYR A 71 -1 O ASP A 70 N ASN A 62 SHEET 3 AA1 3 ILE A 76 ASN A 77 -1 O ILE A 76 N TYR A 71 SSBOND 1 CYS A 24 CYS A 145 1555 1555 2.02 SSBOND 2 CYS A 48 CYS A 133 1555 1555 2.04 SSBOND 3 CYS A 82 CYS A 98 1555 1555 2.04 SSBOND 4 CYS A 94 CYS A 112 1555 1555 2.04 LINK O SER A 78 NA NA A 206 1555 1555 2.32 LINK O CYS A 82 NA NA A 206 1555 1555 2.44 LINK OG SER A 90 NA NA A 206 1555 1555 2.48 LINK O ARG A 91 NA NA A 206 1555 1555 2.49 LINK NA NA A 206 O HOH A 406 1555 1555 2.36 LINK NA NA A 206 O HOH A 390 1555 1555 2.37 SITE 1 AC1 9 GLN A 75 ASN A 77 TRP A 81 ALA A 125 SITE 2 AC1 9 TRP A 126 HOH A 353 HOH A 372 HOH A 386 SITE 3 AC1 9 HOH A 413 SITE 1 AC2 2 TRP A 141 HOH A 305 SITE 1 AC3 5 ARG A 79 TRP A 80 GLY A 89 ARG A 91 SITE 2 AC3 5 HOH A 318 SITE 1 AC4 2 TRP A 80 ASP A 119 SITE 1 AC5 5 ARG A 39 GLY A 40 GLU A 53 HOH A 345 SITE 2 AC5 5 HOH A 360 SITE 1 AC6 6 SER A 78 CYS A 82 SER A 90 ARG A 91 SITE 2 AC6 6 HOH A 390 HOH A 406 SITE 1 AC7 2 LYS A 51 PHE A 56 SITE 1 AC8 3 ASN A 83 PRO A 97 HOH A 423 SITE 1 AC9 2 ARG A 91 ASN A 92 SITE 1 AD1 2 ILE A 106 HOH A 474 SITE 1 AD2 5 ASN A 83 GLY A 85 ARG A 86 THR A 87 SITE 2 AD2 5 SER A 90 SITE 1 AD3 4 SER A 42 GLY A 44 GLN A 139 HOH A 437 SITE 1 AD4 2 TYR A 41 ASN A 131 SITE 1 AD5 4 ASN A 37 SER A 42 LEU A 43 HOH A 320 CRYST1 79.070 79.070 36.980 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012647 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027042 0.00000