HEADER HYDROLASE 10-AUG-19 6SIM TITLE SAD STRUCTURE OF HEN EGG WHITE LYSOZYME RECOVERED BY INVERSE BEAM TITLE 2 GEOMETRY DATA COLLECTION AND UNIVARIATE ANALYSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS UNIVARIATE ANALYSIS, SINGLE-WAVELENGTH X-RAY ANOMALOUS DIFFRACTION, KEYWDS 2 INVERSE BEAM GEOMETRY COLLECTION, HEN EGG WHITE LYSOZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.GARCIA-BONETE,G.KATONA REVDAT 2 13-NOV-19 6SIM 1 JRNL REVDAT 1 06-NOV-19 6SIM 0 JRNL AUTH M.J.GARCIA-BONETE,G.KATONA JRNL TITL BAYESIAN MACHINE LEARNING IMPROVES SINGLE-WAVELENGTH JRNL TITL 2 ANOMALOUS DIFFRACTION PHASING. JRNL REF ACTA CRYSTALLOGR.,SECT.A V. 75 851 2019 JRNL REFN ESSN 2053-2733 JRNL PMID 31692460 JRNL DOI 10.1107/S2053273319011446 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.547 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 28210 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.016 REMARK 3 FREE R VALUE TEST SET COUNT : 1415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5300 - 3.4683 1.00 2765 145 0.1373 0.1547 REMARK 3 2 3.4683 - 2.7531 1.00 2756 147 0.1392 0.1432 REMARK 3 3 2.7531 - 2.4052 1.00 2749 149 0.1526 0.1949 REMARK 3 4 2.4052 - 2.1853 1.00 2753 142 0.1338 0.1537 REMARK 3 5 2.1853 - 2.0287 1.00 2751 146 0.1376 0.1588 REMARK 3 6 2.0287 - 1.9091 1.00 2792 144 0.1337 0.1967 REMARK 3 7 1.9091 - 1.8134 1.00 2723 146 0.1424 0.1886 REMARK 3 8 1.8134 - 1.7345 1.00 2780 144 0.1614 0.2081 REMARK 3 9 1.7345 - 1.6677 1.00 2722 145 0.1854 0.2307 REMARK 3 10 1.6677 - 1.6102 0.73 2004 107 0.2780 0.3581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.171 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.535 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.09 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1088 REMARK 3 ANGLE : 0.779 1468 REMARK 3 CHIRALITY : 0.052 149 REMARK 3 PLANARITY : 0.004 194 REMARK 3 DIHEDRAL : 9.560 649 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3349 23.4118 18.4932 REMARK 3 T TENSOR REMARK 3 T11: 0.1114 T22: 0.1158 REMARK 3 T33: 0.1654 T12: 0.0294 REMARK 3 T13: 0.0320 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 6.6771 L22: 3.0358 REMARK 3 L33: 5.9696 L12: 2.9473 REMARK 3 L13: -0.5182 L23: 1.6401 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.2826 S13: 0.2262 REMARK 3 S21: -0.0456 S22: -0.1488 S23: 0.2367 REMARK 3 S31: -0.1582 S32: -0.1914 S33: 0.1032 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.0183 16.0397 7.2447 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.1458 REMARK 3 T33: 0.1611 T12: -0.0141 REMARK 3 T13: -0.0260 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 6.2196 L22: 6.9346 REMARK 3 L33: 1.6755 L12: -2.9799 REMARK 3 L13: -0.7426 L23: -0.7805 REMARK 3 S TENSOR REMARK 3 S11: -0.1640 S12: -0.1155 S13: -0.0921 REMARK 3 S21: -0.0295 S22: 0.2206 S23: 0.4371 REMARK 3 S31: -0.0625 S32: -0.1132 S33: 0.0007 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0451 18.4856 11.4105 REMARK 3 T TENSOR REMARK 3 T11: 0.0845 T22: 0.0722 REMARK 3 T33: 0.1057 T12: 0.0162 REMARK 3 T13: 0.0143 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.8984 L22: 1.8852 REMARK 3 L33: 1.8795 L12: 1.1958 REMARK 3 L13: -0.4054 L23: 0.1538 REMARK 3 S TENSOR REMARK 3 S11: 0.0130 S12: -0.0999 S13: -0.0609 REMARK 3 S21: -0.1091 S22: -0.0103 S23: -0.1011 REMARK 3 S31: 0.0553 S32: 0.1497 S33: 0.0062 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.1946 21.8035 7.5397 REMARK 3 T TENSOR REMARK 3 T11: 0.0689 T22: 0.0822 REMARK 3 T33: 0.0714 T12: -0.0012 REMARK 3 T13: -0.0074 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 8.3777 L22: 8.2414 REMARK 3 L33: 5.9043 L12: 6.5937 REMARK 3 L13: -1.9965 L23: -4.0498 REMARK 3 S TENSOR REMARK 3 S11: -0.0277 S12: 0.0577 S13: -0.0037 REMARK 3 S21: -0.1420 S22: 0.0904 S23: 0.1444 REMARK 3 S31: 0.1617 S32: -0.2330 S33: -0.0199 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.4940 23.9478 -1.4096 REMARK 3 T TENSOR REMARK 3 T11: 0.1442 T22: 0.1544 REMARK 3 T33: 0.1213 T12: -0.0186 REMARK 3 T13: 0.0261 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 3.8913 L22: 6.2632 REMARK 3 L33: 3.6047 L12: 4.6111 REMARK 3 L13: 3.0544 L23: 3.1535 REMARK 3 S TENSOR REMARK 3 S11: -0.2805 S12: 0.6627 S13: -0.1461 REMARK 3 S21: -0.2874 S22: 0.3454 S23: -0.3160 REMARK 3 S31: 0.1933 S32: 0.2094 S33: -0.1162 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7104 27.6965 1.9788 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.0919 REMARK 3 T33: 0.1501 T12: -0.0264 REMARK 3 T13: -0.0240 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 4.0229 L22: 1.1161 REMARK 3 L33: 5.3860 L12: 0.7066 REMARK 3 L13: -1.8395 L23: -0.5932 REMARK 3 S TENSOR REMARK 3 S11: -0.1249 S12: 0.2622 S13: 0.2321 REMARK 3 S21: -0.1277 S22: 0.1426 S23: 0.1842 REMARK 3 S31: 0.0081 S32: -0.0765 S33: -0.0113 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.6040 22.3279 3.4259 REMARK 3 T TENSOR REMARK 3 T11: 0.0903 T22: 0.1095 REMARK 3 T33: 0.1349 T12: 0.0005 REMARK 3 T13: -0.0116 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 4.7475 L22: 6.4903 REMARK 3 L33: 8.4660 L12: 1.3723 REMARK 3 L13: 1.0318 L23: 7.3759 REMARK 3 S TENSOR REMARK 3 S11: 0.0238 S12: 0.1489 S13: 0.1646 REMARK 3 S21: -0.1523 S22: -0.1039 S23: 0.1654 REMARK 3 S31: -0.2367 S32: -0.3420 S33: 0.0565 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6707 9.8193 5.2647 REMARK 3 T TENSOR REMARK 3 T11: 0.0757 T22: 0.0851 REMARK 3 T33: 0.1176 T12: -0.0093 REMARK 3 T13: 0.0229 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 6.6217 L22: 2.9779 REMARK 3 L33: 7.8473 L12: -1.1701 REMARK 3 L13: 5.4765 L23: -1.2340 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.1996 S13: -0.1708 REMARK 3 S21: -0.2502 S22: 0.0078 S23: -0.1186 REMARK 3 S31: 0.1520 S32: 0.4233 S33: 0.0005 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2453 7.1640 16.8983 REMARK 3 T TENSOR REMARK 3 T11: 0.1334 T22: 0.1356 REMARK 3 T33: 0.1431 T12: -0.0220 REMARK 3 T13: 0.0190 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 3.2117 L22: 5.0877 REMARK 3 L33: 4.7208 L12: -3.3187 REMARK 3 L13: -3.1340 L23: 4.8515 REMARK 3 S TENSOR REMARK 3 S11: -0.1309 S12: 0.0161 S13: -0.1616 REMARK 3 S21: 0.2522 S22: -0.0046 S23: 0.3752 REMARK 3 S31: 0.3301 S32: -0.4729 S33: 0.2071 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 142 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4489 16.0019 23.4978 REMARK 3 T TENSOR REMARK 3 T11: 0.2015 T22: 0.2584 REMARK 3 T33: 0.3366 T12: 0.0300 REMARK 3 T13: 0.1182 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 7.8237 L22: 4.4022 REMARK 3 L33: 4.9880 L12: -4.9006 REMARK 3 L13: -3.5803 L23: 4.3554 REMARK 3 S TENSOR REMARK 3 S11: -0.1307 S12: -0.2079 S13: -0.3272 REMARK 3 S21: 0.5523 S22: -0.0779 S23: 0.9468 REMARK 3 S31: 0.1174 S32: -0.2900 S33: 0.1391 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SIM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103774. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54980 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28213 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 39.535 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 38.10 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 44.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM NA ACETATE PH 4.5 1M NACL 25% REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.49000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.53500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.73500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.53500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.24500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.53500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.73500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.53500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.53500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.24500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.49000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 342 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 366 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 457 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 ILE A 6 REMARK 465 LEU A 7 REMARK 465 VAL A 8 REMARK 465 LEU A 9 REMARK 465 CYS A 10 REMARK 465 PHE A 11 REMARK 465 LEU A 12 REMARK 465 PRO A 13 REMARK 465 LEU A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 GLY A 18 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 206 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 78 O REMARK 620 2 CYS A 82 O 89.2 REMARK 620 3 SER A 90 OG 90.7 170.3 REMARK 620 4 ARG A 91 O 93.9 88.7 101.0 REMARK 620 5 HOH A 377 O 99.9 88.3 82.2 165.8 REMARK 620 6 HOH A 381 O 171.8 98.9 81.1 87.2 79.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 214 DBREF 6SIM A 1 147 UNP P00698 LYSC_CHICK 1 147 SEQRES 1 A 147 MET ARG SER LEU LEU ILE LEU VAL LEU CYS PHE LEU PRO SEQRES 2 A 147 LEU ALA ALA LEU GLY LYS VAL PHE GLY ARG CYS GLU LEU SEQRES 3 A 147 ALA ALA ALA MET LYS ARG HIS GLY LEU ASP ASN TYR ARG SEQRES 4 A 147 GLY TYR SER LEU GLY ASN TRP VAL CYS ALA ALA LYS PHE SEQRES 5 A 147 GLU SER ASN PHE ASN THR GLN ALA THR ASN ARG ASN THR SEQRES 6 A 147 ASP GLY SER THR ASP TYR GLY ILE LEU GLN ILE ASN SER SEQRES 7 A 147 ARG TRP TRP CYS ASN ASP GLY ARG THR PRO GLY SER ARG SEQRES 8 A 147 ASN LEU CYS ASN ILE PRO CYS SER ALA LEU LEU SER SER SEQRES 9 A 147 ASP ILE THR ALA SER VAL ASN CYS ALA LYS LYS ILE VAL SEQRES 10 A 147 SER ASP GLY ASN GLY MET ASN ALA TRP VAL ALA TRP ARG SEQRES 11 A 147 ASN ARG CYS LYS GLY THR ASP VAL GLN ALA TRP ILE ARG SEQRES 12 A 147 GLY CYS ARG LEU HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET ACT A 204 4 HET ACT A 205 4 HET NA A 206 1 HET CL A 207 1 HET CL A 208 1 HET CL A 209 1 HET CL A 210 1 HET CL A 211 1 HET CL A 212 1 HET CL A 213 1 HET CL A 214 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 3(C2 H6 O2) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 NA NA 1+ FORMUL 8 CL 8(CL 1-) FORMUL 16 HOH *160(H2 O) HELIX 1 AA1 GLY A 22 HIS A 33 1 12 HELIX 2 AA2 ASN A 37 TYR A 41 5 5 HELIX 3 AA3 SER A 42 ASN A 55 1 14 HELIX 4 AA4 PRO A 97 SER A 103 5 7 HELIX 5 AA5 ILE A 106 SER A 118 1 13 HELIX 6 AA6 ASN A 121 ALA A 125 5 5 HELIX 7 AA7 TRP A 126 CYS A 133 1 8 HELIX 8 AA8 ASP A 137 ILE A 142 5 6 SHEET 1 AA1 3 THR A 61 ARG A 63 0 SHEET 2 AA1 3 THR A 69 TYR A 71 -1 O ASP A 70 N ASN A 62 SHEET 3 AA1 3 ILE A 76 ASN A 77 -1 O ILE A 76 N TYR A 71 SSBOND 1 CYS A 24 CYS A 145 1555 1555 2.02 SSBOND 2 CYS A 48 CYS A 133 1555 1555 2.04 SSBOND 3 CYS A 82 CYS A 98 1555 1555 2.04 SSBOND 4 CYS A 94 CYS A 112 1555 1555 2.04 LINK O SER A 78 NA NA A 206 1555 1555 2.36 LINK O CYS A 82 NA NA A 206 1555 1555 2.45 LINK OG SER A 90 NA NA A 206 1555 1555 2.49 LINK O ARG A 91 NA NA A 206 1555 1555 2.50 LINK NA NA A 206 O HOH A 377 1555 1555 2.38 LINK NA NA A 206 O HOH A 381 1555 1555 2.36 SITE 1 AC1 9 GLN A 75 ASN A 77 TRP A 81 ALA A 125 SITE 2 AC1 9 TRP A 126 HOH A 321 HOH A 365 HOH A 389 SITE 3 AC1 9 HOH A 398 SITE 1 AC2 6 ARG A 79 TRP A 80 GLY A 89 SER A 90 SITE 2 AC2 6 ARG A 91 HOH A 317 SITE 1 AC3 1 HOH A 301 SITE 1 AC4 3 TRP A 80 TRP A 81 ASP A 119 SITE 1 AC5 5 GLY A 40 GLU A 53 ASN A 62 HOH A 341 SITE 2 AC5 5 HOH A 345 SITE 1 AC6 6 SER A 78 CYS A 82 SER A 90 ARG A 91 SITE 2 AC6 6 HOH A 377 HOH A 381 SITE 1 AC7 2 LYS A 51 PHE A 56 SITE 1 AC8 3 ASN A 83 PRO A 97 HOH A 409 SITE 1 AC9 2 ARG A 91 ASN A 92 SITE 1 AD1 2 ILE A 106 HOH A 443 SITE 1 AD2 4 GLY A 85 ARG A 86 THR A 87 SER A 90 SITE 1 AD3 4 SER A 42 GLY A 44 GLN A 139 HOH A 425 SITE 1 AD4 2 TYR A 41 ASN A 131 SITE 1 AD5 3 ASP A 36 SER A 42 LEU A 43 CRYST1 79.070 79.070 36.980 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012647 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027042 0.00000