HEADER TRANSFERASE 13-AUG-19 6SJ8 TITLE METHYLTRANSFERASE MTGA FROM DESULFITOBACTERIUM HAFNIENSE IN COMPLEX TITLE 2 WITH TETRAHYDROFOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRAHYDROMETHANOPTERIN S-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.86; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE DCB-2; SOURCE 3 ORGANISM_TAXID: 272564; SOURCE 4 GENE: DHAF_4327; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28B(+) KEYWDS ANAEROBIC BACTERIA, GLYCINE BETAINE METABOLISM, METHYL TRANSFER, KEYWDS 2 COBALAMIN, TETRAHYDROFOLATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.BADMANN,M.GROLL REVDAT 3 25-MAR-20 6SJ8 1 JRNL REVDAT 2 27-NOV-19 6SJ8 1 JRNL REVDAT 1 25-SEP-19 6SJ8 0 JRNL AUTH T.BADMANN,M.GROLL JRNL TITL STRUCTURES IN TETRAHYDROFOLATE METHYLATION IN JRNL TITL 2 DESULFITOBACTERIAL GLYCINE BETAINE METABOLISM AT ATOMIC JRNL TITL 3 RESOLUTION. JRNL REF CHEMBIOCHEM V. 21 776 2020 JRNL REFN ESSN 1439-7633 JRNL PMID 31518049 JRNL DOI 10.1002/CBIC.201900515 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 113987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.122 REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5999 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8335 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 439 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 578 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.27000 REMARK 3 B22 (A**2) : -1.05000 REMARK 3 B33 (A**2) : -0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.047 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.089 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4873 ; 0.010 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 4568 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6595 ; 1.472 ; 1.667 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10660 ; 1.073 ; 1.654 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 608 ; 5.919 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 214 ;34.763 ;24.206 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 820 ;11.680 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;22.690 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 649 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5402 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 908 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9437 ; 1.975 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 341 ;24.419 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 9583 ;10.828 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6SJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103831. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 120092 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 27% PEG 3350, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.88000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.24500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.24500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.88000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1187 O HOH B 1227 1.21 REMARK 500 O HOH B 1153 O HOH B 1234 1.69 REMARK 500 O HOH A 1086 O HOH A 1170 1.72 REMARK 500 O HOH B 1054 O HOH B 1199 1.81 REMARK 500 O HOH A 1017 O HOH A 1103 1.86 REMARK 500 O HOH B 1121 O HOH B 1259 1.87 REMARK 500 O HOH B 1007 O HOH B 1227 2.06 REMARK 500 OG SER A 105 OD1 ASP A 107 2.07 REMARK 500 O HOH A 1087 O HOH A 1194 2.10 REMARK 500 O HOH A 1111 O HOH A 1260 2.11 REMARK 500 O HOH B 1120 O HOH B 1253 2.14 REMARK 500 O HOH A 1049 O HOH A 1245 2.14 REMARK 500 O HOH A 1071 O HOH A 1265 2.15 REMARK 500 O HOH A 1119 O HOH A 1205 2.16 REMARK 500 O HOH B 1233 O HOH B 1240 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 162 O HOH B 1047 3546 1.50 REMARK 500 O HOH B 1056 O HOH B 1166 2564 1.63 REMARK 500 O HOH B 1166 O HOH B 1269 2565 2.13 REMARK 500 O HOH A 1159 O HOH A 1197 2555 2.15 REMARK 500 O HOH A 1011 O HOH A 1060 3656 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 174 -128.37 57.57 REMARK 500 ASP B 174 -124.48 58.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 109 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 902 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 25 O REMARK 620 2 HOH A1054 O 125.2 REMARK 620 3 HOH A1095 O 105.1 78.6 REMARK 620 4 HOH A1130 O 91.8 88.4 162.6 REMARK 620 5 HOH A1169 O 127.2 106.3 71.7 101.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 902 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 44V B 901 O11 REMARK 620 2 HOH B1231 O 72.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 44V A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 44V B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 905 DBREF 6SJ8 A 2 306 UNP B8FUR2 B8FUR2_DESHD 2 306 DBREF 6SJ8 B 2 306 UNP B8FUR2 B8FUR2_DESHD 2 306 SEQADV 6SJ8 GLY A 0 UNP B8FUR2 EXPRESSION TAG SEQADV 6SJ8 SER A 1 UNP B8FUR2 EXPRESSION TAG SEQADV 6SJ8 GLY B 0 UNP B8FUR2 EXPRESSION TAG SEQADV 6SJ8 SER B 1 UNP B8FUR2 EXPRESSION TAG SEQRES 1 A 307 GLY SER PHE LYS PHE THR ALA GLN GLN HIS VAL TYR ASP SEQRES 2 A 307 ILE ASN GLY VAL LYS VAL GLY GLY GLN PRO GLY GLU TYR SEQRES 3 A 307 PRO THR VAL LEU ILE GLY SER ILE PHE TYR ARG GLY HIS SEQRES 4 A 307 LYS ILE VAL SER ASP GLY GLN LYS GLY ILE PHE ASP LYS SEQRES 5 A 307 ASP ALA ALA LYS ALA LEU LEU ASP GLN GLU ALA GLU LEU SEQRES 6 A 307 SER ALA GLU THR GLY ASN PRO PHE ILE ILE ASP VAL LEU SEQRES 7 A 307 GLY GLU SER VAL GLU ALA LEU THR LYS TYR VAL GLU PHE SEQRES 8 A 307 ILE LEU GLU ASN THR THR ALA PRO PHE LEU LEU ASP SER SEQRES 9 A 307 ILE SER PRO ASP VAL ARG VAL GLY ALA LEU LYS ASN LEU SEQRES 10 A 307 GLY LYS ASP PRO GLU ILE GLN LYS ARG LEU ILE TYR ASN SEQRES 11 A 307 SER ILE GLU GLU HIS TYR THR GLU GLU GLU LEU ALA ALA SEQRES 12 A 307 ILE LYS GLU ALA GLY LEU LYS THR ALA VAL ILE LEU ALA SEQRES 13 A 307 PHE SER LYS LYS ALA LEU LYS PRO ASN ALA ARG ILE ASP SEQRES 14 A 307 LEU LEU GLN GLY LYS ASP ASP LYS GLU GLY LEU ILE ALA SEQRES 15 A 307 ALA ALA LYS ARG ALA GLY ILE GLU GLN PHE LEU VAL ASP SEQRES 16 A 307 PRO GLY VAL LEU ASP VAL ALA SER ASN SER TRP THR THR SEQRES 17 A 307 GLU ALA ILE ASN VAL VAL LYS GLU GLN PHE GLY TYR PRO SEQRES 18 A 307 GLY GLY CYS ALA PRO SER ASN ALA VAL TYR LEU TRP LYS SEQRES 19 A 307 LYS MET ARG SER LYS GLY THR PRO PHE PHE GLU VAL ALA SEQRES 20 A 307 GLY ALA ALA VAL PHE THR TYR PRO ILE THR GLN GLY ALA SEQRES 21 A 307 ASP PHE ILE LEU TYR GLY PRO MET MET ASN ALA PRO TRP SEQRES 22 A 307 VAL TYR ARG ALA ILE ALA THR THR ASP ALA MET ILE ALA SEQRES 23 A 307 TYR ASN ASN LYS LEU THR GLY VAL LYS MET GLY THR THR SEQRES 24 A 307 GLU HIS PRO LEU LEU LYS ILE PHE SEQRES 1 B 307 GLY SER PHE LYS PHE THR ALA GLN GLN HIS VAL TYR ASP SEQRES 2 B 307 ILE ASN GLY VAL LYS VAL GLY GLY GLN PRO GLY GLU TYR SEQRES 3 B 307 PRO THR VAL LEU ILE GLY SER ILE PHE TYR ARG GLY HIS SEQRES 4 B 307 LYS ILE VAL SER ASP GLY GLN LYS GLY ILE PHE ASP LYS SEQRES 5 B 307 ASP ALA ALA LYS ALA LEU LEU ASP GLN GLU ALA GLU LEU SEQRES 6 B 307 SER ALA GLU THR GLY ASN PRO PHE ILE ILE ASP VAL LEU SEQRES 7 B 307 GLY GLU SER VAL GLU ALA LEU THR LYS TYR VAL GLU PHE SEQRES 8 B 307 ILE LEU GLU ASN THR THR ALA PRO PHE LEU LEU ASP SER SEQRES 9 B 307 ILE SER PRO ASP VAL ARG VAL GLY ALA LEU LYS ASN LEU SEQRES 10 B 307 GLY LYS ASP PRO GLU ILE GLN LYS ARG LEU ILE TYR ASN SEQRES 11 B 307 SER ILE GLU GLU HIS TYR THR GLU GLU GLU LEU ALA ALA SEQRES 12 B 307 ILE LYS GLU ALA GLY LEU LYS THR ALA VAL ILE LEU ALA SEQRES 13 B 307 PHE SER LYS LYS ALA LEU LYS PRO ASN ALA ARG ILE ASP SEQRES 14 B 307 LEU LEU GLN GLY LYS ASP ASP LYS GLU GLY LEU ILE ALA SEQRES 15 B 307 ALA ALA LYS ARG ALA GLY ILE GLU GLN PHE LEU VAL ASP SEQRES 16 B 307 PRO GLY VAL LEU ASP VAL ALA SER ASN SER TRP THR THR SEQRES 17 B 307 GLU ALA ILE ASN VAL VAL LYS GLU GLN PHE GLY TYR PRO SEQRES 18 B 307 GLY GLY CYS ALA PRO SER ASN ALA VAL TYR LEU TRP LYS SEQRES 19 B 307 LYS MET ARG SER LYS GLY THR PRO PHE PHE GLU VAL ALA SEQRES 20 B 307 GLY ALA ALA VAL PHE THR TYR PRO ILE THR GLN GLY ALA SEQRES 21 B 307 ASP PHE ILE LEU TYR GLY PRO MET MET ASN ALA PRO TRP SEQRES 22 B 307 VAL TYR ARG ALA ILE ALA THR THR ASP ALA MET ILE ALA SEQRES 23 B 307 TYR ASN ASN LYS LEU THR GLY VAL LYS MET GLY THR THR SEQRES 24 B 307 GLU HIS PRO LEU LEU LYS ILE PHE HET 44V A 901 13 HET NA A 902 1 HET GOL A 903 6 HET GOL A 904 6 HET GOL A 905 6 HET 44V B 901 13 HET NA B 902 1 HET SO4 B 903 5 HET GOL B 904 6 HET GOL B 905 6 HETNAM 44V (6S)-2-AMINO-6-METHYL-5,6,7,8-TETRAHYDROPTERIDIN-4(3H)- HETNAM 2 44V ONE HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 44V 2(C7 H11 N5 O) FORMUL 4 NA 2(NA 1+) FORMUL 5 GOL 5(C3 H8 O3) FORMUL 10 SO4 O4 S 2- FORMUL 13 HOH *578(H2 O) HELIX 1 AA1 ASP A 50 GLY A 69 1 20 HELIX 2 AA2 SER A 80 THR A 95 1 16 HELIX 3 AA3 SER A 105 GLY A 117 1 13 HELIX 4 AA4 ASP A 119 ARG A 125 1 7 HELIX 5 AA5 THR A 136 ALA A 146 1 11 HELIX 6 AA6 ASN A 164 GLN A 171 1 8 HELIX 7 AA7 GLY A 178 ALA A 186 1 9 HELIX 8 AA8 SER A 202 PHE A 217 1 16 HELIX 9 AA9 PRO A 225 LEU A 231 1 7 HELIX 10 AB1 TRP A 232 SER A 237 1 6 HELIX 11 AB2 PRO A 241 GLN A 257 1 17 HELIX 12 AB3 ASN A 269 GLY A 292 1 24 HELIX 13 AB4 HIS A 300 LYS A 304 5 5 HELIX 14 AB5 ASP B 50 GLY B 69 1 20 HELIX 15 AB6 SER B 80 THR B 95 1 16 HELIX 16 AB7 SER B 105 GLY B 117 1 13 HELIX 17 AB8 ASP B 119 ARG B 125 1 7 HELIX 18 AB9 THR B 136 GLY B 147 1 12 HELIX 19 AC1 LYS B 162 GLY B 172 1 11 HELIX 20 AC2 GLY B 178 ALA B 186 1 9 HELIX 21 AC3 SER B 202 PHE B 217 1 16 HELIX 22 AC4 PRO B 225 LEU B 231 1 7 HELIX 23 AC5 TRP B 232 SER B 237 1 6 HELIX 24 AC6 PRO B 241 GLN B 257 1 17 HELIX 25 AC7 ASN B 269 ASN B 287 1 19 HELIX 26 AC8 ASN B 287 GLY B 292 1 6 HELIX 27 AC9 HIS B 300 LYS B 304 5 5 SHEET 1 AA1 2 VAL A 10 ILE A 13 0 SHEET 2 AA1 2 VAL A 16 GLY A 19 -1 O VAL A 16 N ILE A 13 SHEET 1 AA2 8 GLN A 190 ASP A 194 0 SHEET 2 AA2 8 THR A 150 LEU A 154 1 N ILE A 153 O LEU A 192 SHEET 3 AA2 8 LEU A 126 ILE A 131 1 N TYR A 128 O VAL A 152 SHEET 4 AA2 8 PHE A 99 ASP A 102 1 N PHE A 99 O ILE A 127 SHEET 5 AA2 8 PHE A 72 LEU A 77 1 N ILE A 74 O LEU A 100 SHEET 6 AA2 8 VAL A 28 ILE A 33 1 N GLY A 31 O ASP A 75 SHEET 7 AA2 8 PHE A 261 PRO A 266 1 O GLY A 265 N SER A 32 SHEET 8 AA2 8 GLY A 222 CYS A 223 1 N CYS A 223 O LEU A 263 SHEET 1 AA3 2 VAL A 41 ASP A 43 0 SHEET 2 AA3 2 ILE A 48 PHE A 49 -1 O ILE A 48 N SER A 42 SHEET 1 AA4 2 GLY A 172 LYS A 173 0 SHEET 2 AA4 2 LYS A 176 GLU A 177 -1 O LYS A 176 N LYS A 173 SHEET 1 AA5 2 VAL B 10 ILE B 13 0 SHEET 2 AA5 2 VAL B 16 GLY B 19 -1 O VAL B 16 N ILE B 13 SHEET 1 AA6 8 GLN B 190 ASP B 194 0 SHEET 2 AA6 8 THR B 150 LEU B 154 1 N ALA B 151 O LEU B 192 SHEET 3 AA6 8 LEU B 126 ILE B 131 1 N TYR B 128 O VAL B 152 SHEET 4 AA6 8 PHE B 99 ASP B 102 1 N PHE B 99 O ILE B 127 SHEET 5 AA6 8 PHE B 72 LEU B 77 1 N ILE B 74 O LEU B 100 SHEET 6 AA6 8 VAL B 28 ILE B 33 1 N GLY B 31 O ASP B 75 SHEET 7 AA6 8 PHE B 261 PRO B 266 1 O GLY B 265 N SER B 32 SHEET 8 AA6 8 GLY B 222 CYS B 223 1 N CYS B 223 O LEU B 263 SHEET 1 AA7 2 VAL B 41 ASP B 43 0 SHEET 2 AA7 2 ILE B 48 PHE B 49 -1 O ILE B 48 N ASP B 43 LINK O TYR A 25 NA NA A 902 1555 1555 2.26 LINK NA NA A 902 O HOH A1054 1555 1555 2.22 LINK NA NA A 902 O HOH A1095 1555 1555 2.86 LINK NA NA A 902 O HOH A1130 1555 1555 2.10 LINK NA NA A 902 O HOH A1169 1555 1555 2.20 LINK O11 44V B 901 NA NA B 902 1555 1555 2.48 LINK NA NA B 902 O HOH B1231 1555 1555 3.17 CISPEP 1 ASN A 129 SER A 130 0 17.99 CISPEP 2 THR A 240 PRO A 241 0 3.04 CISPEP 3 ASN B 129 SER B 130 0 22.43 CISPEP 4 THR B 240 PRO B 241 0 3.67 SITE 1 AC1 7 ASN A 129 ASP A 194 ALA A 224 ASN A 227 SITE 2 AC1 7 HOH A1059 HOH A1061 HOH A1097 SITE 1 AC2 5 TYR A 25 HOH A1054 HOH A1095 HOH A1130 SITE 2 AC2 5 HOH A1169 SITE 1 AC3 6 ARG A 185 HOH A1001 LYS B 39 ILE B 40 SITE 2 AC3 6 ASP B 50 HOH B1041 SITE 1 AC4 11 PHE A 49 ASP A 50 LYS A 51 ASP A 52 SITE 2 AC4 11 GOL A 905 HOH A1055 HOH A1177 THR B 5 SITE 3 AC4 11 ALA B 6 GLN B 7 GLN B 21 SITE 1 AC5 8 GLY A 47 ILE A 48 PHE A 49 LYS A 51 SITE 2 AC5 8 GOL A 904 ALA B 6 GLN B 7 HOH B1168 SITE 1 AC6 8 ASN B 129 LEU B 154 ASP B 194 ALA B 224 SITE 2 AC6 8 NA B 902 HOH B1005 HOH B1023 HOH B1189 SITE 1 AC7 4 PHE B 156 GLY B 196 VAL B 197 44V B 901 SITE 1 AC8 6 GLU A 138 GLU B 137 LEU B 140 ALA B 141 SITE 2 AC8 6 ARG B 185 HOH B1018 SITE 1 AC9 7 GLU A 145 HOH A1259 HOH A1273 THR B 136 SITE 2 AC9 7 GLU B 137 GLU B 138 HOH B1028 SITE 1 AD1 9 LYS A 124 PHE A 306 HOH A1153 ASP B 199 SITE 2 AD1 9 VAL B 200 LEU B 231 HOH B1017 HOH B1031 SITE 3 AD1 9 HOH B1098 CRYST1 75.760 83.850 86.490 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013200 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011562 0.00000