HEADER RNA BINDING PROTEIN 13-AUG-19 6SJD TITLE ZC3H12B-RIBONUCLEASE DOMAIN BOUND TO RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RIBONUCLEASE ZC3H12B; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: MCP-INDUCED PROTEIN 2,ZINC FINGER CCCH DOMAIN-CONTAINING COMPND 5 PROTEIN 12B; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'- COMPND 10 R(*UP*GP*CP*GP*AP*CP*AP*GP*UP*CP*GP*GP*UP*AP*GP*CP*A)-3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZC3H12B, CXORF32, MCPIP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETG20A-SBP; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS PIN RNASE DOMAIN, SPLICE DONOR SEQUENCE RNA, DEGRADATION OF KEYWDS 2 CYTOPLASMIC VIRAL AND/OR UNSPLICED TRANSCRIPTS, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.MORGUNOVA,G.BOURENKOV,J.TAIPALE REVDAT 4 24-JAN-24 6SJD 1 REMARK REVDAT 3 19-AUG-20 6SJD 1 JRNL REVDAT 2 05-AUG-20 6SJD 1 JRNL LINK REVDAT 1 22-JUL-20 6SJD 0 JRNL AUTH A.JOLMA,J.ZHANG,E.MONDRAGON,E.MORGUNOVA,T.KIVIOJA, JRNL AUTH 2 K.U.LAVERTY,Y.YIN,F.ZHU,G.BOURENKOV,Q.MORRIS,T.R.HUGHES, JRNL AUTH 3 L.J.MAHER 3RD,J.TAIPALE JRNL TITL BINDING SPECIFICITIES OF HUMAN RNA-BINDING PROTEINS TOWARD JRNL TITL 2 STRUCTURED AND LINEAR RNA SEQUENCES. JRNL REF GENOME RES. V. 30 962 2020 JRNL REFN ISSN 1088-9051 JRNL PMID 32703884 JRNL DOI 10.1101/GR.258848.119 REMARK 2 REMARK 2 RESOLUTION. 3.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 66.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.4 REMARK 3 NUMBER OF REFLECTIONS : 13337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 684 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 66.9540 - 5.6253 1.00 3442 194 0.2309 0.2959 REMARK 3 2 5.6253 - 4.4653 1.00 3257 182 0.2121 0.2184 REMARK 3 3 4.4653 - 3.9009 0.97 3136 166 0.2324 0.2860 REMARK 3 4 3.9009 - 3.5443 0.66 2121 107 0.3030 0.3470 REMARK 3 5 3.5443 - 3.2902 0.22 697 35 0.3489 0.4120 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 106.6 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 134.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 185 THROUGH 352) REMARK 3 ORIGIN FOR THE GROUP (A): 28.9235 -16.2014 -17.4003 REMARK 3 T TENSOR REMARK 3 T11: 0.8980 T22: -0.0463 REMARK 3 T33: 0.3509 T12: 0.0058 REMARK 3 T13: -0.2563 T23: -0.0851 REMARK 3 L TENSOR REMARK 3 L11: 0.0510 L22: 0.2738 REMARK 3 L33: 0.0654 L12: -0.0296 REMARK 3 L13: -0.0432 L23: 0.0318 REMARK 3 S TENSOR REMARK 3 S11: 0.0198 S12: -0.1026 S13: -0.2119 REMARK 3 S21: 0.2878 S22: 0.1131 S23: 0.1621 REMARK 3 S31: 0.0652 S32: -0.0398 S33: 0.1943 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 184 THROUGH 361) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8196 -43.7198 -20.0682 REMARK 3 T TENSOR REMARK 3 T11: 1.0353 T22: -0.1927 REMARK 3 T33: 0.3567 T12: -0.0094 REMARK 3 T13: -0.1659 T23: 0.1106 REMARK 3 L TENSOR REMARK 3 L11: 0.0319 L22: 0.1873 REMARK 3 L33: 0.0144 L12: 0.0857 REMARK 3 L13: -0.0067 L23: -0.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: -0.0137 S13: -0.1419 REMARK 3 S21: 0.1148 S22: 0.0159 S23: -0.3045 REMARK 3 S31: 0.1567 S32: -0.0206 S33: 0.2012 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 3 THROUGH 19) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5841 -10.5366 -41.6086 REMARK 3 T TENSOR REMARK 3 T11: 0.6586 T22: 0.6412 REMARK 3 T33: 1.2214 T12: 0.0157 REMARK 3 T13: 0.0353 T23: -0.1098 REMARK 3 L TENSOR REMARK 3 L11: 0.0085 L22: 0.0345 REMARK 3 L33: 0.0040 L12: -0.0186 REMARK 3 L13: 0.0083 L23: 0.0106 REMARK 3 S TENSOR REMARK 3 S11: 0.2165 S12: 0.0768 S13: 0.0779 REMARK 3 S21: 0.0444 S22: 0.0394 S23: 0.0953 REMARK 3 S31: -0.1841 S32: -0.0999 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : (CHAIN A AND (RESID 1 OR RESID 185 REMARK 3 THROUGH 352)) REMARK 3 ATOM PAIRS NUMBER : 1516 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103682. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97626 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13344 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.290 REMARK 200 RESOLUTION RANGE LOW (A) : 93.972 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 25.50 REMARK 200 R MERGE (I) : 0.43600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 58.1 REMARK 200 DATA REDUNDANCY IN SHELL : 26.70 REMARK 200 R MERGE FOR SHELL (I) : 5.35700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 3V33 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, SODIUM CACODILATE, REMARK 280 2-METHYL-2,4-PENTANDIOL, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.63400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.11850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.11850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.95100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.11850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.11850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.31700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.11850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.11850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 123.95100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.11850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.11850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 41.31700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.63400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A, D REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -82.63400 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 184 REMARK 465 PRO B 353 REMARK 465 GLU B 354 REMARK 465 HIS B 355 REMARK 465 LYS B 356 REMARK 465 LYS B 357 REMARK 465 GLN B 358 REMARK 465 PRO B 359 REMARK 465 CYS B 360 REMARK 465 PRO B 361 REMARK 465 A D 1 REMARK 465 A D 2 REMARK 465 U D 20 REMARK 465 C D 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U D 3 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE21 GLN B 215 OD1 ASP B 219 1.46 REMARK 500 O ASN B 205 H GLU B 208 1.57 REMARK 500 O LYS B 327 O HOH B 1101 1.86 REMARK 500 O MET B 329 O HOH B 1102 1.94 REMARK 500 O CYS A 277 O HOH A 1101 2.03 REMARK 500 OP2 C D 5 O HOH D 201 2.04 REMARK 500 O5' U D 3 O HOH D 201 2.05 REMARK 500 O GLY A 204 N LYS A 206 2.06 REMARK 500 O LYS B 327 O HOH B 1103 2.06 REMARK 500 OD1 ASP A 280 O HOH A 1102 2.08 REMARK 500 O HIS A 203 O HOH A 1103 2.09 REMARK 500 OD1 ASP B 280 O HOH B 1104 2.11 REMARK 500 OE1 GLU A 343 NH1 ARG A 347 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 187 80.26 -69.09 REMARK 500 HIS B 203 -70.91 -80.18 REMARK 500 ASN B 205 62.67 27.84 REMARK 500 LYS B 206 -44.89 -5.91 REMARK 500 TRP B 236 1.01 -65.47 REMARK 500 ALA B 245 59.17 -140.49 REMARK 500 TYR B 278 84.30 57.33 REMARK 500 VAL B 324 78.60 -118.72 REMARK 500 ASN B 325 -68.58 71.45 REMARK 500 ASP B 326 42.07 -148.96 REMARK 500 ASN A 205 63.55 -28.34 REMARK 500 LYS A 206 -60.18 40.42 REMARK 500 TRP A 236 1.30 -65.61 REMARK 500 VAL A 270 -73.45 -80.53 REMARK 500 TYR A 278 86.97 54.82 REMARK 500 VAL A 324 76.55 -117.32 REMARK 500 ASN A 325 -65.95 70.58 REMARK 500 ASP A 326 43.40 -147.02 REMARK 500 VAL A 352 130.30 -36.75 REMARK 500 GLN A 358 136.87 78.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 280 OD1 REMARK 620 2 HOH B1104 O 47.0 REMARK 620 3 HOH B1106 O 90.6 121.8 REMARK 620 4 HOH D 211 O 135.9 89.5 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 280 OD2 REMARK 620 2 HOH A1102 O 80.8 REMARK 620 3 HOH A1105 O 99.3 50.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC D 101 DBREF 6SJD B 184 361 UNP Q5HYM0 ZC12B_HUMAN 185 362 DBREF 6SJD A 184 361 UNP Q5HYM0 ZC12B_HUMAN 185 362 DBREF 6SJD D 1 21 PDB 6SJD 6SJD 1 21 SEQRES 1 B 178 ASP ASN SER ASP ASN LEU ARG PRO VAL VAL ILE ASP GLY SEQRES 2 B 178 SER ASN VAL ALA MET SER HIS GLY ASN LYS GLU GLU PHE SEQRES 3 B 178 SER CYS ARG GLY ILE GLN LEU ALA VAL ASP TRP PHE LEU SEQRES 4 B 178 ASP LYS GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA SEQRES 5 B 178 TRP ARG LYS GLU GLN SER ARG PRO ASP ALA PRO ILE THR SEQRES 6 B 178 ASP GLN ASP ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE SEQRES 7 B 178 LEU VAL PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG SEQRES 8 B 178 VAL VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA SEQRES 9 B 178 PHE ASP SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR SEQRES 10 B 178 ARG ASP LEU GLN VAL GLU LYS PRO GLU TRP LYS LYS PHE SEQRES 11 B 178 ILE GLU GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP SEQRES 12 B 178 LYS PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY SEQRES 13 B 178 PRO SER LEU GLU ASN PHE LEU ARG LYS ARG PRO ILE VAL SEQRES 14 B 178 PRO GLU HIS LYS LYS GLN PRO CYS PRO SEQRES 1 A 178 ASP ASN SER ASP ASN LEU ARG PRO VAL VAL ILE ASP GLY SEQRES 2 A 178 SER ASN VAL ALA MET SER HIS GLY ASN LYS GLU GLU PHE SEQRES 3 A 178 SER CYS ARG GLY ILE GLN LEU ALA VAL ASP TRP PHE LEU SEQRES 4 A 178 ASP LYS GLY HIS LYS ASP ILE THR VAL PHE VAL PRO ALA SEQRES 5 A 178 TRP ARG LYS GLU GLN SER ARG PRO ASP ALA PRO ILE THR SEQRES 6 A 178 ASP GLN ASP ILE LEU ARG LYS LEU GLU LYS GLU LYS ILE SEQRES 7 A 178 LEU VAL PHE THR PRO SER ARG ARG VAL GLN GLY ARG ARG SEQRES 8 A 178 VAL VAL CYS TYR ASP ASP ARG PHE ILE VAL LYS LEU ALA SEQRES 9 A 178 PHE ASP SER ASP GLY ILE ILE VAL SER ASN ASP ASN TYR SEQRES 10 A 178 ARG ASP LEU GLN VAL GLU LYS PRO GLU TRP LYS LYS PHE SEQRES 11 A 178 ILE GLU GLU ARG LEU LEU MET TYR SER PHE VAL ASN ASP SEQRES 12 A 178 LYS PHE MET PRO PRO ASP ASP PRO LEU GLY ARG HIS GLY SEQRES 13 A 178 PRO SER LEU GLU ASN PHE LEU ARG LYS ARG PRO ILE VAL SEQRES 14 A 178 PRO GLU HIS LYS LYS GLN PRO CYS PRO SEQRES 1 D 21 A A U G C G A C A G U C G SEQRES 2 D 21 G U A G C A U C HET MG B1001 1 HET MG A1001 1 HET CAC D 101 5 HETNAM MG MAGNESIUM ION HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 4 MG 2(MG 2+) FORMUL 6 CAC C2 H6 AS O2 1- FORMUL 7 HOH *25(H2 O) HELIX 1 AA1 GLY B 196 GLY B 204 1 9 HELIX 2 AA2 CYS B 211 LYS B 224 1 14 HELIX 3 AA3 TRP B 236 GLU B 239 5 4 HELIX 4 AA4 ASP B 251 LYS B 258 1 8 HELIX 5 AA5 ASP B 279 ASP B 291 1 13 HELIX 6 AA6 TYR B 300 LYS B 307 1 8 HELIX 7 AA7 LYS B 307 ARG B 317 1 11 HELIX 8 AA8 SER B 341 LEU B 346 1 6 HELIX 9 AA9 GLY A 196 GLY A 204 1 9 HELIX 10 AB1 CYS A 211 LYS A 224 1 14 HELIX 11 AB2 TRP A 236 GLU A 239 5 4 HELIX 12 AB3 ASP A 251 LYS A 258 1 8 HELIX 13 AB4 ASP A 279 ASP A 291 1 13 HELIX 14 AB5 TYR A 300 LYS A 307 1 8 HELIX 15 AB6 LYS A 307 ARG A 317 1 11 HELIX 16 AB7 SER A 341 ARG A 347 1 7 SHEET 1 AA1 5 LEU B 262 THR B 265 0 SHEET 2 AA1 5 ILE B 229 PRO B 234 1 N VAL B 233 O THR B 265 SHEET 3 AA1 5 VAL B 192 ASP B 195 1 N ILE B 194 O THR B 230 SHEET 4 AA1 5 ILE B 293 VAL B 295 1 O VAL B 295 N ASP B 195 SHEET 5 AA1 5 LEU B 318 LEU B 319 1 O LEU B 319 N ILE B 294 SHEET 1 AA2 2 PHE B 209 SER B 210 0 SHEET 2 AA2 2 ILE B 247 THR B 248 1 O THR B 248 N PHE B 209 SHEET 1 AA3 2 ARG B 268 ARG B 269 0 SHEET 2 AA3 2 ARG B 274 VAL B 275 -1 O VAL B 275 N ARG B 268 SHEET 1 AA4 2 SER B 322 PHE B 323 0 SHEET 2 AA4 2 PHE B 328 MET B 329 -1 O MET B 329 N SER B 322 SHEET 1 AA5 5 LEU A 262 THR A 265 0 SHEET 2 AA5 5 ILE A 229 PRO A 234 1 N VAL A 233 O THR A 265 SHEET 3 AA5 5 VAL A 192 ASP A 195 1 N ILE A 194 O THR A 230 SHEET 4 AA5 5 ILE A 293 VAL A 295 1 O VAL A 295 N VAL A 193 SHEET 5 AA5 5 LEU A 318 LEU A 319 1 O LEU A 319 N ILE A 294 SHEET 1 AA6 2 PHE A 209 SER A 210 0 SHEET 2 AA6 2 ILE A 247 THR A 248 1 O THR A 248 N PHE A 209 SHEET 1 AA7 2 ARG A 268 ARG A 269 0 SHEET 2 AA7 2 ARG A 274 VAL A 275 -1 O VAL A 275 N ARG A 268 SHEET 1 AA8 2 SER A 322 PHE A 323 0 SHEET 2 AA8 2 PHE A 328 MET A 329 -1 O MET A 329 N SER A 322 LINK OD1 ASP B 280 MG MG B1001 1555 1555 2.85 LINK MG MG B1001 O HOH B1104 1555 1555 2.27 LINK MG MG B1001 O HOH B1106 1555 1555 2.55 LINK MG MG B1001 O HOH D 211 1555 1555 2.71 LINK OD2 ASP A 280 MG MG A1001 1555 1555 2.91 LINK MG MG A1001 O HOH A1102 1555 1555 2.33 LINK MG MG A1001 O HOH A1105 1555 1555 2.82 SITE 1 AC1 5 ASP B 280 HOH B1104 HOH B1105 HOH B1106 SITE 2 AC1 5 HOH D 211 SITE 1 AC2 5 ASP A 280 ASP A 298 HOH A1102 HOH A1105 SITE 2 AC2 5 HOH A1107 SITE 1 AC3 4 U D 3 C D 5 HOH D 202 HOH D 209 CRYST1 114.237 114.237 165.268 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008754 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006051 0.00000