HEADER TRANSFERASE 13-AUG-19 6SJO TITLE METHYLTRANSFERASE OF THE MTGA D102A MUTANT FROM DESULFITOBACTERIUM TITLE 2 HAFNIENSE IN COMPLEX WITH METHYL-TETRAHYDROFOLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETRAHYDROMETHANOPTERIN S-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.1.1.86; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE DCB-2; SOURCE 3 ORGANISM_TAXID: 272564; SOURCE 4 GENE: DHAF_4327; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-28B(+) KEYWDS ANAEROBIC BACTERIA, GLYCINE BETAINE METABOLISM, METHYL TRANSFER, KEYWDS 2 COBALAMIN, TETRAHYDROFOLATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.BADMANN,M.GROLL REVDAT 4 24-JAN-24 6SJO 1 REMARK REVDAT 3 25-MAR-20 6SJO 1 JRNL REVDAT 2 27-NOV-19 6SJO 1 JRNL REVDAT 1 25-SEP-19 6SJO 0 JRNL AUTH T.BADMANN,M.GROLL JRNL TITL STRUCTURES IN TETRAHYDROFOLATE METHYLATION IN JRNL TITL 2 DESULFITOBACTERIAL GLYCINE BETAINE METABOLISM AT ATOMIC JRNL TITL 3 RESOLUTION. JRNL REF CHEMBIOCHEM V. 21 776 2020 JRNL REFN ESSN 1439-7633 JRNL PMID 31518049 JRNL DOI 10.1002/CBIC.201900515 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 39770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2093 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2896 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4679 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 76 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.84000 REMARK 3 B22 (A**2) : -3.19000 REMARK 3 B33 (A**2) : -1.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.459 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4837 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4594 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6551 ; 1.297 ; 1.650 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10677 ; 1.226 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 606 ; 5.905 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;35.813 ;24.190 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 815 ;13.264 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.786 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 639 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5373 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 942 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 9428 ; 1.014 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 901 REMARK 3 ORIGIN FOR THE GROUP (A): 23.8100 -8.9553 64.1989 REMARK 3 T TENSOR REMARK 3 T11: 0.0030 T22: 0.0313 REMARK 3 T33: 0.0395 T12: 0.0011 REMARK 3 T13: -0.0020 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.0194 L22: 0.1334 REMARK 3 L33: 0.1307 L12: 0.0055 REMARK 3 L13: -0.0378 L23: -0.0273 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: 0.0045 S13: 0.0063 REMARK 3 S21: 0.0049 S22: 0.0098 S23: 0.0078 REMARK 3 S31: 0.0172 S32: 0.0078 S33: -0.0037 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 306 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0914 27.1384 61.3572 REMARK 3 T TENSOR REMARK 3 T11: 0.0026 T22: 0.0299 REMARK 3 T33: 0.0350 T12: -0.0008 REMARK 3 T13: 0.0015 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.0600 L22: 0.1226 REMARK 3 L33: 0.0824 L12: -0.0301 REMARK 3 L13: 0.0199 L23: -0.0112 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: 0.0076 S13: -0.0079 REMARK 3 S21: 0.0044 S22: 0.0024 S23: 0.0056 REMARK 3 S31: -0.0119 S32: -0.0019 S33: -0.0044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6SJO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103834. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41877 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1SJ8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 27% PEG 3350, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.51500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.78000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.14500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.78000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.51500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.14500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 SER A 1 REMARK 465 PHE A 2 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 PHE B 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 118 53.57 -99.82 REMARK 500 ASP A 174 -119.07 58.50 REMARK 500 SER B 103 141.99 -170.30 REMARK 500 SER B 157 136.72 -170.53 REMARK 500 ASP B 174 -118.28 55.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue THH A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 DBREF 6SJO A 2 306 UNP B8FUR2 B8FUR2_DESHD 2 306 DBREF 6SJO B 2 306 UNP B8FUR2 B8FUR2_DESHD 2 306 SEQADV 6SJO GLY A 0 UNP B8FUR2 EXPRESSION TAG SEQADV 6SJO SER A 1 UNP B8FUR2 EXPRESSION TAG SEQADV 6SJO ALA A 102 UNP B8FUR2 ASP 102 ENGINEERED MUTATION SEQADV 6SJO GLY B 0 UNP B8FUR2 EXPRESSION TAG SEQADV 6SJO SER B 1 UNP B8FUR2 EXPRESSION TAG SEQADV 6SJO ALA B 102 UNP B8FUR2 ASP 102 ENGINEERED MUTATION SEQRES 1 A 307 GLY SER PHE LYS PHE THR ALA GLN GLN HIS VAL TYR ASP SEQRES 2 A 307 ILE ASN GLY VAL LYS VAL GLY GLY GLN PRO GLY GLU TYR SEQRES 3 A 307 PRO THR VAL LEU ILE GLY SER ILE PHE TYR ARG GLY HIS SEQRES 4 A 307 LYS ILE VAL SER ASP GLY GLN LYS GLY ILE PHE ASP LYS SEQRES 5 A 307 ASP ALA ALA LYS ALA LEU LEU ASP GLN GLU ALA GLU LEU SEQRES 6 A 307 SER ALA GLU THR GLY ASN PRO PHE ILE ILE ASP VAL LEU SEQRES 7 A 307 GLY GLU SER VAL GLU ALA LEU THR LYS TYR VAL GLU PHE SEQRES 8 A 307 ILE LEU GLU ASN THR THR ALA PRO PHE LEU LEU ALA SER SEQRES 9 A 307 ILE SER PRO ASP VAL ARG VAL GLY ALA LEU LYS ASN LEU SEQRES 10 A 307 GLY LYS ASP PRO GLU ILE GLN LYS ARG LEU ILE TYR ASN SEQRES 11 A 307 SER ILE GLU GLU HIS TYR THR GLU GLU GLU LEU ALA ALA SEQRES 12 A 307 ILE LYS GLU ALA GLY LEU LYS THR ALA VAL ILE LEU ALA SEQRES 13 A 307 PHE SER LYS LYS ALA LEU LYS PRO ASN ALA ARG ILE ASP SEQRES 14 A 307 LEU LEU GLN GLY LYS ASP ASP LYS GLU GLY LEU ILE ALA SEQRES 15 A 307 ALA ALA LYS ARG ALA GLY ILE GLU GLN PHE LEU VAL ASP SEQRES 16 A 307 PRO GLY VAL LEU ASP VAL ALA SER ASN SER TRP THR THR SEQRES 17 A 307 GLU ALA ILE ASN VAL VAL LYS GLU GLN PHE GLY TYR PRO SEQRES 18 A 307 GLY GLY CYS ALA PRO SER ASN ALA VAL TYR LEU TRP LYS SEQRES 19 A 307 LYS MET ARG SER LYS GLY THR PRO PHE PHE GLU VAL ALA SEQRES 20 A 307 GLY ALA ALA VAL PHE THR TYR PRO ILE THR GLN GLY ALA SEQRES 21 A 307 ASP PHE ILE LEU TYR GLY PRO MET MET ASN ALA PRO TRP SEQRES 22 A 307 VAL TYR ARG ALA ILE ALA THR THR ASP ALA MET ILE ALA SEQRES 23 A 307 TYR ASN ASN LYS LEU THR GLY VAL LYS MET GLY THR THR SEQRES 24 A 307 GLU HIS PRO LEU LEU LYS ILE PHE SEQRES 1 B 307 GLY SER PHE LYS PHE THR ALA GLN GLN HIS VAL TYR ASP SEQRES 2 B 307 ILE ASN GLY VAL LYS VAL GLY GLY GLN PRO GLY GLU TYR SEQRES 3 B 307 PRO THR VAL LEU ILE GLY SER ILE PHE TYR ARG GLY HIS SEQRES 4 B 307 LYS ILE VAL SER ASP GLY GLN LYS GLY ILE PHE ASP LYS SEQRES 5 B 307 ASP ALA ALA LYS ALA LEU LEU ASP GLN GLU ALA GLU LEU SEQRES 6 B 307 SER ALA GLU THR GLY ASN PRO PHE ILE ILE ASP VAL LEU SEQRES 7 B 307 GLY GLU SER VAL GLU ALA LEU THR LYS TYR VAL GLU PHE SEQRES 8 B 307 ILE LEU GLU ASN THR THR ALA PRO PHE LEU LEU ALA SER SEQRES 9 B 307 ILE SER PRO ASP VAL ARG VAL GLY ALA LEU LYS ASN LEU SEQRES 10 B 307 GLY LYS ASP PRO GLU ILE GLN LYS ARG LEU ILE TYR ASN SEQRES 11 B 307 SER ILE GLU GLU HIS TYR THR GLU GLU GLU LEU ALA ALA SEQRES 12 B 307 ILE LYS GLU ALA GLY LEU LYS THR ALA VAL ILE LEU ALA SEQRES 13 B 307 PHE SER LYS LYS ALA LEU LYS PRO ASN ALA ARG ILE ASP SEQRES 14 B 307 LEU LEU GLN GLY LYS ASP ASP LYS GLU GLY LEU ILE ALA SEQRES 15 B 307 ALA ALA LYS ARG ALA GLY ILE GLU GLN PHE LEU VAL ASP SEQRES 16 B 307 PRO GLY VAL LEU ASP VAL ALA SER ASN SER TRP THR THR SEQRES 17 B 307 GLU ALA ILE ASN VAL VAL LYS GLU GLN PHE GLY TYR PRO SEQRES 18 B 307 GLY GLY CYS ALA PRO SER ASN ALA VAL TYR LEU TRP LYS SEQRES 19 B 307 LYS MET ARG SER LYS GLY THR PRO PHE PHE GLU VAL ALA SEQRES 20 B 307 GLY ALA ALA VAL PHE THR TYR PRO ILE THR GLN GLY ALA SEQRES 21 B 307 ASP PHE ILE LEU TYR GLY PRO MET MET ASN ALA PRO TRP SEQRES 22 B 307 VAL TYR ARG ALA ILE ALA THR THR ASP ALA MET ILE ALA SEQRES 23 B 307 TYR ASN ASN LYS LEU THR GLY VAL LYS MET GLY THR THR SEQRES 24 B 307 GLU HIS PRO LEU LEU LYS ILE PHE HET THH A 901 33 HET GOL B 401 6 HET GOL B 402 6 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HETNAM THH N-[4-({[(6S)-2-AMINO-4-HYDROXY-5-METHYL-5,6,7,8- HETNAM 2 THH TETRAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L- HETNAM 3 THH GLUTAMIC ACID HETNAM GOL GLYCEROL HETSYN THH 5-METHYLTETRAHYDROFOLATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 THH C20 H25 N7 O6 FORMUL 4 GOL 5(C3 H8 O3) FORMUL 9 HOH *76(H2 O) HELIX 1 AA1 ASP A 50 GLY A 69 1 20 HELIX 2 AA2 SER A 80 THR A 95 1 16 HELIX 3 AA3 SER A 105 GLY A 117 1 13 HELIX 4 AA4 ASP A 119 ARG A 125 1 7 HELIX 5 AA5 THR A 136 GLY A 147 1 12 HELIX 6 AA6 LYS A 162 ASN A 164 5 3 HELIX 7 AA7 ALA A 165 GLN A 171 1 7 HELIX 8 AA8 GLY A 178 ALA A 186 1 9 HELIX 9 AA9 SER A 202 PHE A 217 1 16 HELIX 10 AB1 PRO A 225 TYR A 230 1 6 HELIX 11 AB2 TRP A 232 SER A 237 1 6 HELIX 12 AB3 PRO A 241 TYR A 253 1 13 HELIX 13 AB4 PRO A 254 GLY A 258 5 5 HELIX 14 AB5 ASN A 269 ASN A 287 1 19 HELIX 15 AB6 ASN A 287 GLY A 292 1 6 HELIX 16 AB7 HIS A 300 LYS A 304 5 5 HELIX 17 AB8 ASP B 50 GLY B 69 1 20 HELIX 18 AB9 SER B 80 THR B 95 1 16 HELIX 19 AC1 SER B 105 GLY B 117 1 13 HELIX 20 AC2 ASP B 119 ARG B 125 1 7 HELIX 21 AC3 THR B 136 GLY B 147 1 12 HELIX 22 AC4 LYS B 162 GLY B 172 1 11 HELIX 23 AC5 GLY B 178 ALA B 186 1 9 HELIX 24 AC6 SER B 202 PHE B 217 1 16 HELIX 25 AC7 PRO B 225 LEU B 231 1 7 HELIX 26 AC8 TRP B 232 SER B 237 1 6 HELIX 27 AC9 PRO B 241 TYR B 253 1 13 HELIX 28 AD1 PRO B 254 GLY B 258 5 5 HELIX 29 AD2 ASN B 269 ASN B 287 1 19 HELIX 30 AD3 ASN B 287 GLY B 292 1 6 HELIX 31 AD4 HIS B 300 LYS B 304 5 5 SHEET 1 AA1 2 VAL A 10 ILE A 13 0 SHEET 2 AA1 2 VAL A 16 GLY A 19 -1 O VAL A 16 N ILE A 13 SHEET 1 AA2 8 GLN A 190 ASP A 194 0 SHEET 2 AA2 8 THR A 150 LEU A 154 1 N ILE A 153 O ASP A 194 SHEET 3 AA2 8 LEU A 126 ILE A 131 1 N TYR A 128 O VAL A 152 SHEET 4 AA2 8 PHE A 99 ALA A 102 1 N PHE A 99 O ILE A 127 SHEET 5 AA2 8 PHE A 72 LEU A 77 1 N ILE A 74 O LEU A 100 SHEET 6 AA2 8 VAL A 28 ILE A 33 1 N GLY A 31 O ASP A 75 SHEET 7 AA2 8 PHE A 261 PRO A 266 1 O ILE A 262 N ILE A 30 SHEET 8 AA2 8 GLY A 222 CYS A 223 1 N CYS A 223 O LEU A 263 SHEET 1 AA3 2 VAL A 41 ASP A 43 0 SHEET 2 AA3 2 ILE A 48 PHE A 49 -1 O ILE A 48 N SER A 42 SHEET 1 AA4 2 GLY A 172 LYS A 173 0 SHEET 2 AA4 2 LYS A 176 GLU A 177 -1 O LYS A 176 N LYS A 173 SHEET 1 AA5 2 VAL B 10 ILE B 13 0 SHEET 2 AA5 2 VAL B 16 GLY B 19 -1 O VAL B 16 N ILE B 13 SHEET 1 AA6 8 GLN B 190 ASP B 194 0 SHEET 2 AA6 8 THR B 150 LEU B 154 1 N ILE B 153 O ASP B 194 SHEET 3 AA6 8 LEU B 126 ILE B 131 1 N TYR B 128 O VAL B 152 SHEET 4 AA6 8 PHE B 99 ALA B 102 1 N PHE B 99 O ILE B 127 SHEET 5 AA6 8 PHE B 72 LEU B 77 1 N ILE B 74 O LEU B 100 SHEET 6 AA6 8 VAL B 28 ILE B 33 1 N GLY B 31 O ASP B 75 SHEET 7 AA6 8 PHE B 261 PRO B 266 1 O ILE B 262 N ILE B 30 SHEET 8 AA6 8 GLY B 222 CYS B 223 1 N CYS B 223 O LEU B 263 SHEET 1 AA7 2 VAL B 41 ASP B 43 0 SHEET 2 AA7 2 ILE B 48 PHE B 49 -1 O ILE B 48 N ASP B 43 CISPEP 1 ASN A 129 SER A 130 0 9.44 CISPEP 2 THR A 240 PRO A 241 0 -1.85 CISPEP 3 ASN B 129 SER B 130 0 10.95 CISPEP 4 THR B 240 PRO B 241 0 1.91 SITE 1 AC1 13 SER A 32 TYR A 35 ASP A 75 ASN A 129 SITE 2 AC1 13 VAL A 152 ASP A 194 ALA A 224 ASN A 227 SITE 3 AC1 13 TYR A 230 LEU A 231 ARG A 236 LEU A 263 SITE 4 AC1 13 HOH A1017 SITE 1 AC2 7 SER B 32 ASP B 75 LEU B 77 ASN B 129 SITE 2 AC2 7 LEU B 263 GOL B 402 HOH B 505 SITE 1 AC3 6 ASN B 129 LEU B 154 ASP B 194 ALA B 224 SITE 2 AC3 6 GOL B 401 HOH B 501 SITE 1 AC4 4 GLU A 137 ARG A 185 LYS B 39 ASP B 50 SITE 1 AC5 7 ASP B 12 ASN B 14 GLN B 123 LYS B 124 SITE 2 AC5 7 THR B 150 GLN B 190 HOH B 508 SITE 1 AC6 9 PHE A 49 ASP A 50 LYS A 51 ASP A 52 SITE 2 AC6 9 LYS B 3 PHE B 4 THR B 5 GLN B 7 SITE 3 AC6 9 GLN B 21 CRYST1 77.030 84.290 87.560 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012982 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011421 0.00000