HEADER TRANSFERASE 14-AUG-19 6SJY TITLE DIAMINOBUTYRATE ACETYLTRANSFERASE ECTA FROM PAENIBACILLUS LAUTUS IN TITLE 2 COMPLEX WITH ITS PRODUCT ADABA COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-2,4-DIAMINOBUTYRIC ACID ACETYLTRANSFERASE; COMPND 3 CHAIN: A, C, B; COMPND 4 SYNONYM: DABA ACETYLTRANSFERASE; COMPND 5 EC: 2.3.1.178; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS SP. (STRAIN Y412MC10); SOURCE 3 ORGANISM_TAXID: 481743; SOURCE 4 STRAIN: Y412MC10; SOURCE 5 GENE: ECTA, GYMC10_5665; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS L-2, 4-DIAMINOBUTYRATE ACETYLTRANSFERASE, ACETYL COENZYME A, KEYWDS 2 ACETYLATION, STRESS RESPONSE, CHEMICAL CHAPERONE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.RICHTER,S.KOBUS,L.CZECH,A.HOEPPNER,E.BREMER,S.H.J.SMITS REVDAT 5 24-JAN-24 6SJY 1 REMARK REVDAT 4 30-JUN-21 6SJY 1 SOURCE REMARK DBREF SEQADV REVDAT 3 11-MAR-20 6SJY 1 JRNL REVDAT 2 19-FEB-20 6SJY 1 JRNL REVDAT 1 29-JAN-20 6SJY 0 JRNL AUTH A.A.RICHTER,S.KOBUS,L.CZECH,A.HOEPPNER,J.ZARZYCKI,T.J.ERB, JRNL AUTH 2 L.LAUTERBACH,J.S.DICKSCHAT,E.BREMER,S.H.J.SMITS JRNL TITL THE ARCHITECTURE OF THE DIAMINOBUTYRATE ACETYLTRANSFERASE JRNL TITL 2 ACTIVE SITE PROVIDES MECHANISTIC INSIGHT INTO THE JRNL TITL 3 BIOSYNTHESIS OF THE CHEMICAL CHAPERONE ECTOINE. JRNL REF J.BIOL.CHEM. V. 295 2822 2020 JRNL REFN ESSN 1083-351X JRNL PMID 31969391 JRNL DOI 10.1074/JBC.RA119.011277 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 123.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3399 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 114 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3931 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.139 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.972 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4112 ; 0.021 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3764 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5579 ; 2.145 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8651 ; 1.145 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 509 ; 7.104 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;33.138 ;23.093 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 630 ;14.953 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;21.077 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 608 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4672 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 985 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6SJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 123.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 11.67 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 16.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 11.07 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.08000 REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6SLK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULPHATE, 0.085 M MES REMARK 280 PH 6.5, 25.5 % (W/V) PEG 5000 MME, 15 % (V/V) GLYCEROL, 20 MM N- REMARK 280 GAMMA-ACETYL-2,4-DIAMINOBUTYRATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.49550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 87.10700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 87.10700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.24775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 87.10700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 87.10700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.74325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 87.10700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 87.10700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.24775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 87.10700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 87.10700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 45.74325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 30.49550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -87.10700 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 -87.10700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -15.24775 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 GLY A 171 REMARK 465 SER A 172 REMARK 465 ALA A 173 REMARK 465 TRP A 174 REMARK 465 SER A 175 REMARK 465 HIS A 176 REMARK 465 PRO A 177 REMARK 465 GLN A 178 REMARK 465 PHE A 179 REMARK 465 GLU A 180 REMARK 465 LYS A 181 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 VAL C 3 REMARK 465 ASP C 4 REMARK 465 THR C 5 REMARK 465 GLY C 6 REMARK 465 ASP C 169 REMARK 465 ILE C 170 REMARK 465 GLY C 171 REMARK 465 SER C 172 REMARK 465 ALA C 173 REMARK 465 TRP C 174 REMARK 465 SER C 175 REMARK 465 HIS C 176 REMARK 465 PRO C 177 REMARK 465 GLN C 178 REMARK 465 PHE C 179 REMARK 465 GLU C 180 REMARK 465 LYS C 181 REMARK 465 MET B 1 REMARK 465 PRO B 177 REMARK 465 GLN B 178 REMARK 465 PHE B 179 REMARK 465 GLU B 180 REMARK 465 LYS B 181 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 89 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 104 CG CD CE NZ REMARK 470 GLU B 57 CD OE1 OE2 REMARK 470 ARG B 71 NH1 NH2 REMARK 470 ARG B 89 CD NE CZ NH1 NH2 REMARK 470 LYS B 104 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 74 CD GLU C 74 OE2 0.071 REMARK 500 GLU B 113 CD GLU B 113 OE1 -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 71 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG C 17 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG C 21 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 21 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 THR C 29 N - CA - CB ANGL. DEV. = -11.5 DEGREES REMARK 500 ARG B 12 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 12 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG B 68 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 110 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 110 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 153 158.24 -39.67 REMARK 500 GLU B 57 -117.45 110.42 REMARK 500 TRP B 79 -64.92 -93.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 169 ILE A 170 -146.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9YT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9YT C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9YT B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS B 203 DBREF 6SJY A 1 170 UNP D3EKC1 D3EKC1_GEOS4 1 170 DBREF 6SJY C 1 170 UNP D3EKC1 D3EKC1_GEOS4 1 170 DBREF 6SJY B 1 170 UNP D3EKC1 D3EKC1_GEOS4 1 170 SEQADV 6SJY GLY A 171 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY SER A 172 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY ALA A 173 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY TRP A 174 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY SER A 175 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY HIS A 176 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY PRO A 177 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY GLN A 178 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY PHE A 179 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY GLU A 180 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY LYS A 181 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY GLY C 171 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY SER C 172 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY ALA C 173 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY TRP C 174 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY SER C 175 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY HIS C 176 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY PRO C 177 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY GLN C 178 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY PHE C 179 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY GLU C 180 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY LYS C 181 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY GLY B 171 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY SER B 172 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY ALA B 173 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY TRP B 174 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY SER B 175 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY HIS B 176 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY PRO B 177 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY GLN B 178 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY PHE B 179 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY GLU B 180 UNP D3EKC1 EXPRESSION TAG SEQADV 6SJY LYS B 181 UNP D3EKC1 EXPRESSION TAG SEQRES 1 A 181 MET ALA VAL ASP THR GLY THR GLU VAL VAL TYR ARG ARG SEQRES 2 A 181 PRO GLU ALA ARG ASP GLY THR ARG VAL TRP GLU LEU ILE SEQRES 3 A 181 ARG ASP THR GLY SER LEU ASP LEU ASN SER PRO TYR CYS SEQRES 4 A 181 TYR MET LEU LEU GLY ASP TYR PHE ASN ASP THR CYS MET SEQRES 5 A 181 ILE ALA GLU HIS GLU GLY ASP ILE VAL GLY PHE ILE SER SEQRES 6 A 181 ALA PHE ARG SER PRO ARG ASN PRO GLU THR LEU PHE VAL SEQRES 7 A 181 TRP GLN VAL ALA VAL ALA SER SER HIS ARG ARG GLN GLY SEQRES 8 A 181 ILE ALA LYS ALA MET LEU THR GLY LEU MET ASN GLN LYS SEQRES 9 A 181 ALA CYS HIS GLY VAL ARG PHE ILE GLU THR THR VAL SER SEQRES 10 A 181 PRO SER ASN MET ALA SER ARG ARG LEU PHE LEU GLY TYR SEQRES 11 A 181 ALA GLU GLU LYS SER ILE PRO SER THR VAL THR VAL GLY SEQRES 12 A 181 TYR GLY ALA GLU MET PHE PRO ASP GLY THR THR HIS GLU SEQRES 13 A 181 ASP GLU PRO LEU PHE VAL ILE GLY PRO PHE PHE ASN ASP SEQRES 14 A 181 ILE GLY SER ALA TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 C 181 MET ALA VAL ASP THR GLY THR GLU VAL VAL TYR ARG ARG SEQRES 2 C 181 PRO GLU ALA ARG ASP GLY THR ARG VAL TRP GLU LEU ILE SEQRES 3 C 181 ARG ASP THR GLY SER LEU ASP LEU ASN SER PRO TYR CYS SEQRES 4 C 181 TYR MET LEU LEU GLY ASP TYR PHE ASN ASP THR CYS MET SEQRES 5 C 181 ILE ALA GLU HIS GLU GLY ASP ILE VAL GLY PHE ILE SER SEQRES 6 C 181 ALA PHE ARG SER PRO ARG ASN PRO GLU THR LEU PHE VAL SEQRES 7 C 181 TRP GLN VAL ALA VAL ALA SER SER HIS ARG ARG GLN GLY SEQRES 8 C 181 ILE ALA LYS ALA MET LEU THR GLY LEU MET ASN GLN LYS SEQRES 9 C 181 ALA CYS HIS GLY VAL ARG PHE ILE GLU THR THR VAL SER SEQRES 10 C 181 PRO SER ASN MET ALA SER ARG ARG LEU PHE LEU GLY TYR SEQRES 11 C 181 ALA GLU GLU LYS SER ILE PRO SER THR VAL THR VAL GLY SEQRES 12 C 181 TYR GLY ALA GLU MET PHE PRO ASP GLY THR THR HIS GLU SEQRES 13 C 181 ASP GLU PRO LEU PHE VAL ILE GLY PRO PHE PHE ASN ASP SEQRES 14 C 181 ILE GLY SER ALA TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 B 181 MET ALA VAL ASP THR GLY THR GLU VAL VAL TYR ARG ARG SEQRES 2 B 181 PRO GLU ALA ARG ASP GLY THR ARG VAL TRP GLU LEU ILE SEQRES 3 B 181 ARG ASP THR GLY SER LEU ASP LEU ASN SER PRO TYR CYS SEQRES 4 B 181 TYR MET LEU LEU GLY ASP TYR PHE ASN ASP THR CYS MET SEQRES 5 B 181 ILE ALA GLU HIS GLU GLY ASP ILE VAL GLY PHE ILE SER SEQRES 6 B 181 ALA PHE ARG SER PRO ARG ASN PRO GLU THR LEU PHE VAL SEQRES 7 B 181 TRP GLN VAL ALA VAL ALA SER SER HIS ARG ARG GLN GLY SEQRES 8 B 181 ILE ALA LYS ALA MET LEU THR GLY LEU MET ASN GLN LYS SEQRES 9 B 181 ALA CYS HIS GLY VAL ARG PHE ILE GLU THR THR VAL SER SEQRES 10 B 181 PRO SER ASN MET ALA SER ARG ARG LEU PHE LEU GLY TYR SEQRES 11 B 181 ALA GLU GLU LYS SER ILE PRO SER THR VAL THR VAL GLY SEQRES 12 B 181 TYR GLY ALA GLU MET PHE PRO ASP GLY THR THR HIS GLU SEQRES 13 B 181 ASP GLU PRO LEU PHE VAL ILE GLY PRO PHE PHE ASN ASP SEQRES 14 B 181 ILE GLY SER ALA TRP SER HIS PRO GLN PHE GLU LYS HET GOL A 201 6 HET 9YT A 202 11 HET GOL C 201 6 HET 9YT C 202 11 HET GOL B 201 6 HET 9YT B 202 11 HET TRS B 203 8 HETNAM GOL GLYCEROL HETNAM 9YT (2~{S})-4-ACETAMIDO-2-AZANYL-BUTANOIC ACID HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 4 GOL 3(C3 H8 O3) FORMUL 5 9YT 3(C6 H12 N2 O3) FORMUL 10 TRS C4 H12 N O3 1+ FORMUL 11 HOH *220(H2 O) HELIX 1 AA1 GLU A 15 ARG A 17 5 3 HELIX 2 AA2 ASP A 18 GLY A 30 1 13 HELIX 3 AA3 SER A 36 PHE A 47 1 12 HELIX 4 AA4 ASN A 48 CYS A 51 5 4 HELIX 5 AA5 SER A 85 ARG A 88 5 4 HELIX 6 AA6 GLY A 91 ASN A 102 1 12 HELIX 7 AA7 GLN A 103 HIS A 107 5 5 HELIX 8 AA8 ASN A 120 LYS A 134 1 15 HELIX 9 AA9 GLY A 145 PHE A 149 5 5 HELIX 10 AB1 GLU C 15 ARG C 17 5 3 HELIX 11 AB2 ASP C 18 THR C 29 1 12 HELIX 12 AB3 SER C 36 PHE C 47 1 12 HELIX 13 AB4 ASN C 48 CYS C 51 5 4 HELIX 14 AB5 SER C 85 ARG C 88 5 4 HELIX 15 AB6 GLY C 91 ASN C 102 1 12 HELIX 16 AB7 GLN C 103 HIS C 107 5 5 HELIX 17 AB8 ASN C 120 LYS C 134 1 15 HELIX 18 AB9 GLY C 145 PHE C 149 5 5 HELIX 19 AC1 GLU B 15 ARG B 17 5 3 HELIX 20 AC2 ASP B 18 GLY B 30 1 13 HELIX 21 AC3 SER B 36 PHE B 47 1 12 HELIX 22 AC4 ASN B 48 CYS B 51 5 4 HELIX 23 AC5 SER B 85 ARG B 88 5 4 HELIX 24 AC6 GLY B 91 GLN B 103 1 13 HELIX 25 AC7 LYS B 104 HIS B 107 5 4 HELIX 26 AC8 ASN B 120 SER B 135 1 16 HELIX 27 AC9 GLY B 145 PHE B 149 5 5 SHEET 1 AA1 7 VAL A 10 ARG A 12 0 SHEET 2 AA1 7 MET A 52 HIS A 56 -1 O GLU A 55 N VAL A 10 SHEET 3 AA1 7 ASP A 59 ARG A 68 -1 O VAL A 61 N ALA A 54 SHEET 4 AA1 7 THR A 75 VAL A 83 -1 O PHE A 77 N PHE A 67 SHEET 5 AA1 7 PHE A 111 THR A 115 1 O GLU A 113 N VAL A 78 SHEET 6 AA1 7 GLU A 158 ILE A 163 -1 O ILE A 163 N ILE A 112 SHEET 7 AA1 7 SER A 138 TYR A 144 -1 N TYR A 144 O GLU A 158 SHEET 1 AA2 7 VAL C 10 ARG C 12 0 SHEET 2 AA2 7 MET C 52 HIS C 56 -1 O GLU C 55 N VAL C 10 SHEET 3 AA2 7 ASP C 59 ARG C 68 -1 O VAL C 61 N ALA C 54 SHEET 4 AA2 7 THR C 75 VAL C 83 -1 O PHE C 77 N PHE C 67 SHEET 5 AA2 7 PHE C 111 THR C 115 1 O PHE C 111 N LEU C 76 SHEET 6 AA2 7 GLU C 158 ILE C 163 -1 O PHE C 161 N THR C 114 SHEET 7 AA2 7 SER C 138 TYR C 144 -1 N THR C 141 O LEU C 160 SHEET 1 AA3 7 VAL B 10 ARG B 12 0 SHEET 2 AA3 7 MET B 52 HIS B 56 -1 O GLU B 55 N VAL B 10 SHEET 3 AA3 7 ASP B 59 ARG B 68 -1 O VAL B 61 N ALA B 54 SHEET 4 AA3 7 THR B 75 VAL B 83 -1 O PHE B 77 N PHE B 67 SHEET 5 AA3 7 PHE B 111 THR B 115 1 O GLU B 113 N VAL B 78 SHEET 6 AA3 7 GLU B 158 ILE B 163 -1 O PHE B 161 N THR B 114 SHEET 7 AA3 7 SER B 138 TYR B 144 -1 N THR B 139 O VAL B 162 CISPEP 1 GLY A 164 PRO A 165 0 3.44 CISPEP 2 GLY C 164 PRO C 165 0 3.85 CISPEP 3 GLU B 57 GLY B 58 0 -0.23 CISPEP 4 GLY B 164 PRO B 165 0 9.06 SITE 1 AC1 7 VAL A 81 ALA A 82 VAL A 83 ARG A 88 SITE 2 AC1 7 ASN A 120 ALA A 122 SER A 123 SITE 1 AC2 14 ASP A 33 TYR A 38 TRP A 79 GLN A 80 SITE 2 AC2 14 THR A 114 THR A 115 SER A 123 PHE A 127 SITE 3 AC2 14 GLU A 158 HOH A 301 HOH A 302 HOH A 325 SITE 4 AC2 14 HOH A 326 HOH A 337 SITE 1 AC3 5 ALA B 2 ARG C 12 ARG C 13 GLN C 103 SITE 2 AC3 5 HOH C 320 SITE 1 AC4 14 TYR B 38 ASP C 33 TRP C 79 GLN C 80 SITE 2 AC4 14 VAL C 81 THR C 115 ASN C 120 SER C 123 SITE 3 AC4 14 GLU C 158 HOH C 305 HOH C 306 HOH C 328 SITE 4 AC4 14 HOH C 339 HOH C 364 SITE 1 AC5 3 HOH A 313 THR B 75 GLU B 113 SITE 1 AC6 11 LEU B 32 ASP B 33 TRP B 79 GLN B 80 SITE 2 AC6 11 VAL B 81 THR B 115 SER B 123 GLU B 158 SITE 3 AC6 11 HOH B 302 HOH B 310 TYR C 38 SITE 1 AC7 11 VAL B 83 ARG B 88 ARG B 89 GLN B 90 SITE 2 AC7 11 GLY B 91 ILE B 92 ALA B 93 LYS B 94 SITE 3 AC7 11 ARG B 125 HOH B 305 HOH B 361 CRYST1 174.214 174.214 60.991 90.00 90.00 90.00 P 41 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005740 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016396 0.00000