HEADER TRANSFERASE 14-AUG-19 6SJZ TITLE HSNMT1 IN COMPLEX WITH BOTH MYRCOA AND ACETYLATED-GNCFSKPR SUBSTRATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE 1,TYPE I N- COMPND 5 MYRISTOYLTRANSFERASE,PEPTIDE N-MYRISTOYLTRANSFERASE 1; COMPND 6 EC: 2.3.1.97; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: APOPTOSIS-INDUCING FACTOR 3; COMPND 10 CHAIN: E, F; COMPND 11 SYNONYM: APOPTOSIS-INDUCING FACTOR-LIKE PROTEIN; COMPND 12 EC: 1.-.-.-; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES; COMPND 15 OTHER_DETAILS: ACETYLATED PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NMT1, NMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 DERIVATIVE; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS NMT, MYRISTOYLTRANSFERASE TYPE1, ACYLTRANSFERASE, GNAT, GCN5-RELATED KEYWDS 2 N-ACETYLTRANSFERASES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DIAN,F.B.RIVIERE,T.ASENSIO,C.GIGLIONE,T.MEINNEL REVDAT 3 16-OCT-24 6SJZ 1 REMARK REVDAT 2 24-JAN-24 6SJZ 1 REMARK REVDAT 1 18-MAR-20 6SJZ 0 JRNL AUTH C.DIAN,I.PEREZ-DORADO,F.RIVIERE,T.ASENSIO,P.LEGRAND, JRNL AUTH 2 M.RITZEFELD,M.SHEN,E.COTA,T.MEINNEL,E.W.TATE,C.GIGLIONE JRNL TITL HIGH-RESOLUTION SNAPSHOTS OF HUMAN N-MYRISTOYLTRANSFERASE IN JRNL TITL 2 ACTION ILLUMINATE A MECHANISM PROMOTING N-TERMINAL LYS AND JRNL TITL 3 GLY MYRISTOYLATION. JRNL REF NAT COMMUN V. 11 1132 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32111831 JRNL DOI 10.1038/S41467-020-14847-3 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 109296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 5393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.1489 - 2.1198 1.00 3537 185 0.0000 0.2110 REMARK 3 2 2.1198 - 2.0923 1.00 3383 214 0.0000 0.2223 REMARK 3 3 2.0923 - 2.0661 1.00 3567 139 0.0000 0.2506 REMARK 3 4 2.0661 - 2.0412 1.00 3451 202 0.0000 0.2613 REMARK 3 5 2.0412 - 2.0175 1.00 3424 168 0.0000 0.2615 REMARK 3 6 2.0175 - 1.9950 0.82 2944 122 0.0000 0.3009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6805 REMARK 3 ANGLE : 0.810 9281 REMARK 3 CHIRALITY : 0.071 1020 REMARK 3 PLANARITY : 0.005 1171 REMARK 3 DIHEDRAL : 15.390 4131 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SJZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966000 REMARK 200 MONOCHROMATOR : LAUE [110] DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115590 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 48.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.50900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5O9V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG6K, 100MM SODIUM CITRATE PH REMARK 280 5.5, 100MM MGCL2, 100MM NACL., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 39.95400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 89.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.95400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 89.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 95 REMARK 465 GLY A 96 REMARK 465 SER A 97 REMARK 465 GLU A 98 REMARK 465 PHE A 99 REMARK 465 SER A 100 REMARK 465 VAL A 101 REMARK 465 GLY A 102 REMARK 465 GLN A 103 REMARK 465 GLY A 104 REMARK 465 ARG A 316 REMARK 465 GLY B 95 REMARK 465 GLY B 96 REMARK 465 SER B 97 REMARK 465 GLU B 98 REMARK 465 PHE B 99 REMARK 465 SER B 100 REMARK 465 VAL B 101 REMARK 465 GLY B 102 REMARK 465 GLN B 103 REMARK 465 GLY B 104 REMARK 465 SER B 315 REMARK 465 ARG B 316 REMARK 465 ASN B 317 REMARK 465 ARG F 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 110 CD OE1 OE2 REMARK 470 LYS A 114 CG CD CE NZ REMARK 470 ARG A 166 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 170 CD CE NZ REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 GLN A 321 CG CD OE1 NE2 REMARK 470 ARG A 322 NE CZ NH1 NH2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ARG A 328 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 379 CD OE1 OE2 REMARK 470 LYS A 414 CG CD CE NZ REMARK 470 GLN A 428 CD OE1 NE2 REMARK 470 GLU A 463 CD OE1 OE2 REMARK 470 GLU B 110 CG CD OE1 OE2 REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 GLN B 118 CG CD OE1 NE2 REMARK 470 LYS B 127 CD CE NZ REMARK 470 ASN B 133 CG OD1 ND2 REMARK 470 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 184 CG OD1 OD2 REMARK 470 ARG B 304 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 HIS B 313 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 318 CG SD CE REMARK 470 GLN B 321 CG CD OE1 NE2 REMARK 470 LYS B 325 CG CD CE NZ REMARK 470 ARG B 328 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 331 CG CD OE1 OE2 REMARK 470 LYS B 334 CG CD CE NZ REMARK 470 GLU B 379 CG CD OE1 OE2 REMARK 470 GLU B 393 CG CD OE1 OE2 REMARK 470 GLU B 463 CG CD OE1 OE2 REMARK 470 LYS B 464 CD CE NZ REMARK 470 ARG E 8 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 180 -158.84 -90.73 REMARK 500 TYR A 236 -113.97 51.20 REMARK 500 LEU A 314 99.57 -56.30 REMARK 500 ILE A 381 -65.08 -133.66 REMARK 500 HIS A 410 73.54 -114.36 REMARK 500 PHE A 422 -102.39 -108.88 REMARK 500 MET A 456 -133.08 45.07 REMARK 500 LYS A 466 30.85 70.61 REMARK 500 TYR B 180 -159.44 -86.32 REMARK 500 TYR B 236 -115.43 50.16 REMARK 500 ASN B 302 78.96 -118.31 REMARK 500 ILE B 381 -63.60 -132.43 REMARK 500 ASN B 389 -169.25 -79.69 REMARK 500 PHE B 422 -101.21 -109.83 REMARK 500 GLN B 428 -34.49 -131.66 REMARK 500 MET B 456 -134.76 49.89 REMARK 500 ASN F 2 55.32 -68.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 927 DISTANCE = 6.04 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE E 0 and GLY E 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE F 0 and GLY F 1 DBREF 6SJZ A 99 496 UNP P30419 NMT1_HUMAN 99 496 DBREF 6SJZ B 99 496 UNP P30419 NMT1_HUMAN 99 496 DBREF 6SJZ E 1 8 UNP Q96NN9 AIFM3_HUMAN 2 9 DBREF 6SJZ F 1 8 UNP Q96NN9 AIFM3_HUMAN 2 9 SEQADV 6SJZ GLY A 95 UNP P30419 EXPRESSION TAG SEQADV 6SJZ GLY A 96 UNP P30419 EXPRESSION TAG SEQADV 6SJZ SER A 97 UNP P30419 EXPRESSION TAG SEQADV 6SJZ GLU A 98 UNP P30419 EXPRESSION TAG SEQADV 6SJZ GLY B 95 UNP P30419 EXPRESSION TAG SEQADV 6SJZ GLY B 96 UNP P30419 EXPRESSION TAG SEQADV 6SJZ SER B 97 UNP P30419 EXPRESSION TAG SEQADV 6SJZ GLU B 98 UNP P30419 EXPRESSION TAG SEQADV 6SJZ ACE E 0 UNP Q96NN9 ACETYLATION SEQADV 6SJZ ASN E 2 UNP Q96NN9 GLY 3 ENGINEERED MUTATION SEQADV 6SJZ ARG E 8 UNP Q96NN9 LYS 9 CONFLICT SEQADV 6SJZ ACE F 0 UNP Q96NN9 ACETYLATION SEQADV 6SJZ ASN F 2 UNP Q96NN9 GLY 3 ENGINEERED MUTATION SEQADV 6SJZ ARG F 8 UNP Q96NN9 LYS 9 CONFLICT SEQRES 1 A 402 GLY GLY SER GLU PHE SER VAL GLY GLN GLY PRO ALA LYS SEQRES 2 A 402 THR MET GLU GLU ALA SER LYS ARG SER TYR GLN PHE TRP SEQRES 3 A 402 ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL VAL ASN SEQRES 4 A 402 THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN ILE ARG SEQRES 5 A 402 GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR TRP ASP SEQRES 6 A 402 ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS GLU LEU SEQRES 7 A 402 TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP ASP ASP SEQRES 8 A 402 ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE LEU LEU SEQRES 9 A 402 TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN TRP HIS SEQRES 10 A 402 CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU VAL GLY SEQRES 11 A 402 PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE TYR ASP SEQRES 12 A 402 THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU CYS VAL SEQRES 13 A 402 HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO VAL LEU SEQRES 14 A 402 ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU GLY ILE SEQRES 15 A 402 PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU PRO LYS SEQRES 16 A 402 PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER LEU ASN SEQRES 17 A 402 PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS LEU SER SEQRES 18 A 402 ARG ASN MET THR MET GLN ARG THR MET LYS LEU TYR ARG SEQRES 19 A 402 LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG PRO MET SEQRES 20 A 402 GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU LEU THR SEQRES 21 A 402 ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL MET SER SEQRES 22 A 402 GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN GLU ASN SEQRES 23 A 402 ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN GLY GLU SEQRES 24 A 402 VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO SER THR SEQRES 25 A 402 ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS ALA ALA SEQRES 26 A 402 TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO LEU LEU SEQRES 27 A 402 ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS MET LYS SEQRES 28 A 402 GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET GLU ASN SEQRES 29 A 402 LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE GLY ASP SEQRES 30 A 402 GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS CYS PRO SEQRES 31 A 402 SER MET GLY ALA GLU LYS VAL GLY LEU VAL LEU GLN SEQRES 1 B 402 GLY GLY SER GLU PHE SER VAL GLY GLN GLY PRO ALA LYS SEQRES 2 B 402 THR MET GLU GLU ALA SER LYS ARG SER TYR GLN PHE TRP SEQRES 3 B 402 ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL VAL ASN SEQRES 4 B 402 THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN ILE ARG SEQRES 5 B 402 GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR TRP ASP SEQRES 6 B 402 ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS GLU LEU SEQRES 7 B 402 TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP ASP ASP SEQRES 8 B 402 ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE LEU LEU SEQRES 9 B 402 TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN TRP HIS SEQRES 10 B 402 CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU VAL GLY SEQRES 11 B 402 PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE TYR ASP SEQRES 12 B 402 THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU CYS VAL SEQRES 13 B 402 HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO VAL LEU SEQRES 14 B 402 ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU GLY ILE SEQRES 15 B 402 PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU PRO LYS SEQRES 16 B 402 PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER LEU ASN SEQRES 17 B 402 PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS LEU SER SEQRES 18 B 402 ARG ASN MET THR MET GLN ARG THR MET LYS LEU TYR ARG SEQRES 19 B 402 LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG PRO MET SEQRES 20 B 402 GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU LEU THR SEQRES 21 B 402 ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL MET SER SEQRES 22 B 402 GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN GLU ASN SEQRES 23 B 402 ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN GLY GLU SEQRES 24 B 402 VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO SER THR SEQRES 25 B 402 ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS ALA ALA SEQRES 26 B 402 TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO LEU LEU SEQRES 27 B 402 ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS MET LYS SEQRES 28 B 402 GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET GLU ASN SEQRES 29 B 402 LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE GLY ASP SEQRES 30 B 402 GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS CYS PRO SEQRES 31 B 402 SER MET GLY ALA GLU LYS VAL GLY LEU VAL LEU GLN SEQRES 1 E 9 ACE GLY ASN CYS PHE SER LYS PRO ARG SEQRES 1 F 9 ACE GLY ASN CYS PHE SER LYS PRO ARG HET ACE E 0 3 HET ACE F 0 3 HET MYA A 501 63 HET CL A 502 1 HET GOL A 503 6 HET GOL A 504 6 HET MYA B 501 63 HET GOL B 502 6 HET GOL B 503 6 HET CL B 504 1 HETNAM ACE ACETYL GROUP HETNAM MYA TETRADECANOYL-COA HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN MYA MYRISTOYL-COA HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ACE 2(C2 H4 O) FORMUL 5 MYA 2(C35 H62 N7 O17 P3 S) FORMUL 6 CL 2(CL 1-) FORMUL 7 GOL 4(C3 H8 O3) FORMUL 13 HOH *596(H2 O) HELIX 1 AA1 THR A 108 SER A 113 1 6 HELIX 2 AA2 PHE A 119 GLN A 123 5 5 HELIX 3 AA3 ASP A 165 TYR A 180 1 16 HELIX 4 AA4 SER A 193 ARG A 202 1 10 HELIX 5 AA5 LEU A 207 GLN A 209 5 3 HELIX 6 AA6 LYS A 252 ARG A 255 5 4 HELIX 7 AA7 ARG A 258 LEU A 273 1 16 HELIX 8 AA8 ASN A 302 VAL A 309 1 8 HELIX 9 AA9 THR A 319 TYR A 327 1 9 HELIX 10 AB1 GLU A 342 LYS A 344 5 3 HELIX 11 AB2 ASP A 345 LYS A 358 1 14 HELIX 12 AB3 SER A 367 TYR A 376 1 10 HELIX 13 AB4 PRO A 430 LYS A 445 1 16 HELIX 14 AB5 GLU A 457 PHE A 461 5 5 HELIX 15 AB6 GLY A 487 VAL A 491 5 5 HELIX 16 AB7 THR B 108 LYS B 114 1 7 HELIX 17 AB8 PHE B 119 GLN B 123 5 5 HELIX 18 AB9 ASP B 165 TYR B 180 1 16 HELIX 19 AC1 SER B 193 ARG B 202 1 10 HELIX 20 AC2 LEU B 207 GLN B 209 5 3 HELIX 21 AC3 LYS B 252 ARG B 255 5 4 HELIX 22 AC4 ARG B 258 LEU B 273 1 16 HELIX 23 AC5 ASN B 302 VAL B 309 1 8 HELIX 24 AC6 THR B 319 ARG B 328 1 10 HELIX 25 AC7 GLU B 342 LYS B 344 5 3 HELIX 26 AC8 ASP B 345 LYS B 358 1 14 HELIX 27 AC9 SER B 367 TYR B 376 1 10 HELIX 28 AD1 PRO B 430 LYS B 445 1 16 HELIX 29 AD2 ASN B 458 GLU B 463 1 6 HELIX 30 AD3 GLY B 487 VAL B 491 5 5 SHEET 1 AA111 PHE A 156 ALA A 160 0 SHEET 2 AA111 HIS A 211 VAL A 216 -1 O ARG A 215 N THR A 157 SHEET 3 AA111 LEU A 222 ILE A 235 -1 O VAL A 223 N VAL A 214 SHEET 4 AA111 THR A 238 VAL A 250 -1 O THR A 238 N ILE A 235 SHEET 5 AA111 ALA A 279 ALA A 283 1 O VAL A 280 N VAL A 243 SHEET 6 AA111 GLY A 468 TYR A 479 -1 O TYR A 479 N ALA A 279 SHEET 7 AA111 GLY A 292 SER A 300 -1 N HIS A 298 O GLY A 468 SHEET 8 AA111 VAL A 449 LEU A 453 -1 O ALA A 452 N TRP A 297 SHEET 9 AA111 ALA A 418 SER A 421 1 N ALA A 419 O ASN A 451 SHEET 10 AA111 VAL A 394 THR A 402 -1 N TYR A 401 O TYR A 420 SHEET 11 AA111 LEU A 362 PRO A 364 0 SHEET 1 AA211 LEU A 338 PRO A 340 0 SHEET 2 AA211 ILE A 382 GLU A 388 -1 O VAL A 386 N ARG A 339 SHEET 3 AA211 VAL A 394 THR A 402 -1 O LEU A 398 N PHE A 385 SHEET 4 AA211 ALA A 418 SER A 421 -1 O TYR A 420 N TYR A 401 SHEET 5 AA211 VAL A 449 LEU A 453 1 O ASN A 451 N ALA A 419 SHEET 6 AA211 GLY A 292 SER A 300 -1 N TRP A 297 O ALA A 452 SHEET 7 AA211 GLY A 468 TYR A 479 -1 O GLY A 468 N HIS A 298 SHEET 8 AA211 ALA A 279 ALA A 283 -1 N ALA A 279 O TYR A 479 SHEET 9 AA211 THR A 238 VAL A 250 1 N VAL A 243 O VAL A 280 SHEET 10 AA211 LEU A 222 ILE A 235 -1 N ILE A 235 O THR A 238 SHEET 11 AA211 VAL A 425 HIS A 426 0 SHEET 1 AA3 2 PHE A 188 PHE A 190 0 SHEET 2 AA3 2 SER A 405 ILE A 407 -1 O THR A 406 N ARG A 189 SHEET 1 AA411 PHE B 156 ALA B 160 0 SHEET 2 AA411 HIS B 211 VAL B 216 -1 O ARG B 215 N THR B 157 SHEET 3 AA411 LEU B 222 ILE B 235 -1 O VAL B 223 N VAL B 214 SHEET 4 AA411 THR B 238 VAL B 250 -1 O THR B 238 N ILE B 235 SHEET 5 AA411 ALA B 279 ALA B 283 1 O VAL B 280 N VAL B 243 SHEET 6 AA411 GLY B 468 TYR B 479 -1 O TYR B 479 N ALA B 279 SHEET 7 AA411 GLY B 292 SER B 300 -1 N HIS B 298 O GLY B 468 SHEET 8 AA411 VAL B 449 LEU B 453 -1 O ALA B 452 N TRP B 297 SHEET 9 AA411 ALA B 418 SER B 421 1 N ALA B 419 O ASN B 451 SHEET 10 AA411 VAL B 394 THR B 402 -1 N TYR B 401 O TYR B 420 SHEET 11 AA411 LEU B 362 PRO B 364 0 SHEET 1 AA511 LEU B 338 PRO B 340 0 SHEET 2 AA511 ILE B 382 GLU B 388 -1 O VAL B 386 N ARG B 339 SHEET 3 AA511 VAL B 394 THR B 402 -1 O LEU B 398 N PHE B 385 SHEET 4 AA511 ALA B 418 SER B 421 -1 O TYR B 420 N TYR B 401 SHEET 5 AA511 VAL B 449 LEU B 453 1 O ASN B 451 N ALA B 419 SHEET 6 AA511 GLY B 292 SER B 300 -1 N TRP B 297 O ALA B 452 SHEET 7 AA511 GLY B 468 TYR B 479 -1 O GLY B 468 N HIS B 298 SHEET 8 AA511 ALA B 279 ALA B 283 -1 N ALA B 279 O TYR B 479 SHEET 9 AA511 THR B 238 VAL B 250 1 N VAL B 243 O VAL B 280 SHEET 10 AA511 LEU B 222 ILE B 235 -1 N ILE B 235 O THR B 238 SHEET 11 AA511 VAL B 425 HIS B 426 0 SHEET 1 AA6 3 PHE B 188 PHE B 190 0 SHEET 2 AA6 3 SER B 405 ILE B 407 -1 O THR B 406 N ARG B 189 SHEET 3 AA6 3 SER B 415 LEU B 416 -1 O LEU B 416 N SER B 405 LINK C ACE E 0 N GLY E 1 1555 1555 1.32 LINK C ACE F 0 N GLY F 1 1555 1555 1.32 CISPEP 1 PRO A 288 LYS A 289 0 -12.95 CISPEP 2 PRO B 288 LYS B 289 0 -8.83 SITE 1 AC1 35 ARG A 115 TYR A 117 GLN A 118 PHE A 119 SITE 2 AC1 35 TRP A 120 ASN A 179 TYR A 180 VAL A 181 SITE 3 AC1 35 ASN A 246 PHE A 247 LEU A 248 CYS A 249 SITE 4 AC1 35 VAL A 250 ARG A 255 SER A 256 LYS A 257 SITE 5 AC1 35 ARG A 258 VAL A 259 ALA A 260 PRO A 261 SITE 6 AC1 35 THR A 268 VAL A 271 PHE A 277 TYR A 281 SITE 7 AC1 35 THR A 282 LEU A 287 TYR A 479 HOH A 628 SITE 8 AC1 35 HOH A 658 HOH A 663 HOH A 671 HOH A 697 SITE 9 AC1 35 HOH A 780 HOH A 830 ASN F 2 SITE 1 AC2 4 VAL A 132 LYS A 289 SER A 485 HOH A 861 SITE 1 AC3 7 GLU A 244 TRP A 374 TYR A 423 LEU A 493 SITE 2 AC3 7 VAL A 494 GLN A 496 HOH A 606 SITE 1 AC4 7 PRO A 126 LYS A 289 VAL A 291 LEU A 478 SITE 2 AC4 7 TRP A 481 LYS A 482 CYS A 483 SITE 1 AC5 32 ARG B 115 TYR B 117 GLN B 118 PHE B 119 SITE 2 AC5 32 TRP B 120 ASN B 179 TYR B 180 VAL B 181 SITE 3 AC5 32 ASN B 246 PHE B 247 LEU B 248 CYS B 249 SITE 4 AC5 32 VAL B 250 ARG B 255 SER B 256 LYS B 257 SITE 5 AC5 32 ARG B 258 VAL B 259 ALA B 260 PRO B 261 SITE 6 AC5 32 THR B 268 VAL B 271 PHE B 277 TYR B 281 SITE 7 AC5 32 THR B 282 LEU B 287 TYR B 479 HOH B 609 SITE 8 AC5 32 HOH B 677 HOH B 685 HOH B 708 ASN E 2 SITE 1 AC6 8 LYS B 289 PRO B 290 VAL B 291 LEU B 478 SITE 2 AC6 8 TRP B 481 LYS B 482 CYS B 483 HOH B 635 SITE 1 AC7 9 GLU B 244 MET B 366 TRP B 374 TYR B 423 SITE 2 AC7 9 LEU B 493 VAL B 494 LEU B 495 GLN B 496 SITE 3 AC7 9 HOH B 608 SITE 1 AC8 5 LEU B 161 LEU B 163 ARG B 202 TRP B 206 SITE 2 AC8 5 HIS B 211 SITE 1 AC9 9 TYR B 192 TYR B 296 TYR B 401 LEU B 403 SITE 2 AC9 9 TYR B 420 GLN B 496 HOH B 651 ASN E 2 SITE 3 AC9 9 CYS E 3 SITE 1 AD1 10 TYR A 192 TYR A 296 TYR A 401 LEU A 403 SITE 2 AD1 10 TYR A 420 LEU A 495 GLN A 496 HOH A 618 SITE 3 AD1 10 ASN F 2 CYS F 3 CRYST1 79.908 178.900 58.379 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012514 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005590 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017129 0.00000