HEADER VIRUS 14-AUG-19 6SK6 TITLE CRYO-EM STRUCTURE OF RHINOVIRUS-B5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHINOVIRUS B5 VP4; COMPND 3 CHAIN: D; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: RHINOVIRUS B5 VP2; COMPND 6 CHAIN: B; COMPND 7 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 8 MOL_ID: 3; COMPND 9 MOLECULE: RHINOVIRUS B5 VP1; COMPND 10 CHAIN: A; COMPND 11 MOL_ID: 4; COMPND 12 MOLECULE: RHINOVIRUS B5 VP3; COMPND 13 CHAIN: C; COMPND 14 EC: 3.4.22.29,3.6.1.15,3.4.22.28,2.7.7.48 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS B5; SOURCE 3 ORGANISM_TAXID: 147714; SOURCE 4 OTHER_DETAILS: VIRUS GROWN IN HUMAN CELL LINE; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS B5; SOURCE 7 ORGANISM_TAXID: 147714; SOURCE 8 OTHER_DETAILS: VIRUS GROWN IN HUMAN CELL LINE; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS B5; SOURCE 11 ORGANISM_TAXID: 147714; SOURCE 12 OTHER_DETAILS: VIRUS GROWN IN HUMAN CELL LINE; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: HUMAN RHINOVIRUS B5; SOURCE 15 ORGANISM_TAXID: 147714; SOURCE 16 OTHER_DETAILS: VIRUS GROWN IN HUMAN CELL LINE KEYWDS RV-A89, HRV-B5, VIRUS, CAPSID PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.WALD,N.GOESSWEINER-MOHR,D.BLAAS,M.PASIN REVDAT 4 02-OCT-19 6SK6 1 REMARK REVDAT 3 25-SEP-19 6SK6 1 JRNL REVDAT 2 11-SEP-19 6SK6 1 JRNL REVDAT 1 04-SEP-19 6SK6 0 JRNL AUTH J.WALD,M.PASIN,M.RICHTER,C.WALTHER,N.MATHAI,J.KIRCHMAIR, JRNL AUTH 2 V.A.MAKAROV,N.GOESSWEINER-MOHR,T.C.MARLOVITS,I.ZANELLA, JRNL AUTH 3 A.REAL-HOHN,N.VERDAGUER,D.BLAAS,M.SCHMIDTKE JRNL TITL CRYO-EM STRUCTURE OF PLECONARIL-RESISTANT RHINOVIRUS-B5 JRNL TITL 2 COMPLEXED TO THE ANTIVIRAL OBR-5-340 REVEALS UNEXPECTED JRNL TITL 3 BINDING SITE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 19109 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31462495 JRNL DOI 10.1073/PNAS.1904732116 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CTFFIND, ROSETTA, COOT REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1AYM REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : ROSETTA: DIMAIO, F. ET AL. ATOMIC-ACCURACY REMARK 3 MODELS FROM 4.5-A CRYO-ELECTRON MICROSCOPY DATA WITH DENSITY- REMARK 3 GUIDED ITERATIVE LOCAL REFINEMENT. NAT. METH (2015). DOI:10.1038/ REMARK 3 NMETH.3286 REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 13656 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6SK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103756. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN RHINOVIRUS B5 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1400 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 56.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, B, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 ALA D 3 REMARK 465 GLN D 4 REMARK 465 VAL D 5 REMARK 465 SER D 6 REMARK 465 THR D 7 REMARK 465 GLN D 8 REMARK 465 LYS D 9 REMARK 465 SER D 10 REMARK 465 GLY D 11 REMARK 465 SER D 12 REMARK 465 HIS D 13 REMARK 465 GLU D 14 REMARK 465 ASN D 15 REMARK 465 GLN D 16 REMARK 465 ASN D 17 REMARK 465 ILE D 18 REMARK 465 LEU D 19 REMARK 465 THR D 20 REMARK 465 ASN D 21 REMARK 465 GLY D 22 REMARK 465 SER D 23 REMARK 465 ASN D 24 REMARK 465 GLN D 25 REMARK 465 THR D 26 REMARK 465 PHE D 27 REMARK 465 THR D 28 REMARK 465 VAL D 29 REMARK 465 GLY A 1 REMARK 465 LEU A 2 REMARK 465 GLU A 3 REMARK 465 ASP A 4 REMARK 465 ASP A 5 REMARK 465 LEU A 6 REMARK 465 VAL A 7 REMARK 465 GLU A 8 REMARK 465 VAL A 9 REMARK 465 ILE A 10 REMARK 465 VAL A 11 REMARK 465 ASP A 12 REMARK 465 LYS A 13 REMARK 465 ALA A 14 REMARK 465 GLN A 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 65 OD1 ASN C 42 1.28 REMARK 500 OG1 THR A 65 OD1 ASN C 42 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 38 CG GLU A 38 CD -0.113 REMARK 500 TYR A 190 CB TYR A 190 CG -0.103 REMARK 500 TYR A 204 CB TYR A 204 CG -0.109 REMARK 500 ARG A 259 CG ARG A 259 CD -0.172 REMARK 500 ARG C 112 CB ARG C 112 CG -0.171 REMARK 500 TYR C 117 CZ TYR C 117 CE2 -0.080 REMARK 500 PHE C 186 CB PHE C 186 CG -0.102 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 35 15.39 58.92 REMARK 500 ASP B 57 -132.83 50.80 REMARK 500 MET B 172 29.14 49.07 REMARK 500 ASP B 173 11.86 -151.73 REMARK 500 THR B 192 -85.68 -124.82 REMARK 500 MET B 246 -67.29 -93.48 REMARK 500 PHE A 99 135.47 -171.25 REMARK 500 ASN A 105 115.33 -166.49 REMARK 500 HIS A 220 59.04 -118.80 REMARK 500 VAL A 254 87.02 51.26 REMARK 500 ASN C 56 46.39 -90.38 REMARK 500 THR C 193 -97.81 -118.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 109 VAL A 110 -145.43 REMARK 500 VAL C 72 GLN C 73 -144.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 99 -21.69 REMARK 500 LEU A 109 -21.89 REMARK 500 VAL C 72 -21.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10221 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF RHINOVIRUS-B5 DBREF 6SK6 D 1 69 UNP Q80SQ3 Q80SQ3_9ENTO 1 69 DBREF 6SK6 B 8 259 UNP B9V433 B9V433_9ENTO 77 328 DBREF 6SK6 A 1 288 UNP Q7T659 Q7T659_9ENTO 1 288 DBREF 6SK6 C 1 231 UNP B9V433 B9V433_9ENTO 330 560 SEQADV 6SK6 THR C 4 UNP B9V433 ALA 333 CONFLICT SEQRES 1 D 69 MET GLY ALA GLN VAL SER THR GLN LYS SER GLY SER HIS SEQRES 2 D 69 GLU ASN GLN ASN ILE LEU THR ASN GLY SER ASN GLN THR SEQRES 3 D 69 PHE THR VAL ILE ASN TYR TYR LYS ASP ALA ALA SER SER SEQRES 4 D 69 SER SER ALA GLY GLN SER PHE SER MET ASP PRO SER LYS SEQRES 5 D 69 PHE THR GLU PRO VAL LYS ASP ILE MET LEU LYS GLY ALA SEQRES 6 D 69 PRO ALA LEU ASN SEQRES 1 B 252 GLY TYR SER ASP ARG VAL GLU GLN ILE THR LEU GLY ASN SEQRES 2 B 252 SER THR ILE THR THR GLN GLU ALA ALA ASN SER ILE VAL SEQRES 3 B 252 ALA TYR GLY GLU TRP PRO SER PHE LEU SER ASP VAL ASP SEQRES 4 B 252 ALA SER ASP VAL ASN LYS THR THR LYS PRO ASP THR SER SEQRES 5 B 252 ALA CYS ARG PHE TYR THR LEU ASP SER LYS MET TRP THR SEQRES 6 B 252 GLN GLY SER LYS GLY TRP CYS TRP LYS LEU PRO ASP ALA SEQRES 7 B 252 LEU LYS ASP MET GLY ILE PHE GLY GLN ASN MET PHE PHE SEQRES 8 B 252 HIS SER GLN GLY ARG THR GLY TYR THR ILE HIS VAL GLN SEQRES 9 B 252 CYS ASN ALA THR LYS PHE HIS SER GLY CYS LEU LEU VAL SEQRES 10 B 252 VAL VAL ILE PRO GLU HIS GLN LEU ALA SER ALA GLU GLY SEQRES 11 B 252 GLY ASN VAL SER VAL LEU TYR ASP LYS THR HIS PRO GLY SEQRES 12 B 252 GLU LYS GLY ILE ASP LEU SER GLU ALA ASP SER THR GLY SEQRES 13 B 252 PRO MET LYS ASP PRO LEU TYR MET MET ASP GLY THR LEU SEQRES 14 B 252 ILE GLY ASN SER LEU ILE PHE PRO HIS GLN PHE ILE ASN SEQRES 15 B 252 LEU ARG THR ASN ASN THR ALA THR ILE VAL VAL PRO TYR SEQRES 16 B 252 ILE ASN SER VAL PRO MET ASP SER MET THR ARG HIS ASN SEQRES 17 B 252 ASN LEU SER LEU MET VAL ILE PRO ILE VAL ASP ILE THR SEQRES 18 B 252 ALA THR SER GLY THR THR PRO SER ILE PRO VAL THR ILE SEQRES 19 B 252 THR ILE ALA PRO MET PHE LEU GLU LEU SER GLY ILE ARG SEQRES 20 B 252 SER LYS ALA VAL ILE SEQRES 1 A 288 GLY LEU GLU ASP ASP LEU VAL GLU VAL ILE VAL ASP LYS SEQRES 2 A 288 ALA GLN GLN THR LEU ALA SER ILE LYS SER ASP SER LYS SEQRES 3 A 288 HIS THR GLN LYS VAL PRO SER LEU THR ALA ASN GLU THR SEQRES 4 A 288 GLY ALA THR LEU PRO THR THR PRO SER ASP SER VAL GLU SEQRES 5 A 288 THR ARG THR THR LEU MET HIS TYR THR GLY SER GLU THR SEQRES 6 A 288 THR LEU GLU ASN PHE LEU GLY ARG ALA ALA CYS VAL HIS SEQRES 7 A 288 VAL VAL GLU ILE VAL ASN LYS ARG PRO THR ASP THR GLU SEQRES 8 A 288 GLU HIS ARG MET GLN LEU LEU PHE ASN ASN TRP LYS ILE SEQRES 9 A 288 ASN LEU SER SER LEU VAL GLN LEU ARG ARG LYS LEU GLU SEQRES 10 A 288 MET PHE THR TYR VAL ARG PHE ASP SER GLU TYR THR ILE SEQRES 11 A 288 ILE ALA THR SER SER GLN PRO ASN GLU ALA LYS PHE SER SEQRES 12 A 288 SER ASN LEU THR ILE GLN ALA MET PHE ILE PRO PRO GLY SEQRES 13 A 288 ALA PRO ASN PRO LYS LYS TRP ASP ASP TYR THR TRP GLN SEQRES 14 A 288 SER ALA THR ASN PRO SER VAL PHE PHE ASN VAL GLY LYS SEQRES 15 A 288 SER ALA ARG PHE SER VAL PRO TYR LEU GLY ILE ALA SER SEQRES 16 A 288 ALA TYR ASN CYS PHE TYR ASP GLY TYR SER HIS ASP ASN SEQRES 17 A 288 SER THR THR PRO TYR GLY ILE ASN VAL LEU ASN HIS MET SEQRES 18 A 288 GLY SER MET ALA PHE ARG VAL VAL ASN GLU HIS ASP ASN SEQRES 19 A 288 HIS THR THR HIS VAL LYS VAL ARG VAL TYR HIS ARG ALA SEQRES 20 A 288 LYS HIS ILE ARG ALA TRP VAL PRO ARG ALA PRO ARG ALA SEQRES 21 A 288 LEU GLU TYR LEU HIS ILE GLY ARG THR ASN TYR LYS GLN SEQRES 22 A 288 SER PRO GLN ASN PRO ILE LYS THR ARG LYS THR ILE SER SEQRES 23 A 288 THR TYR SEQRES 1 C 231 GLY LEU PRO THR VAL LEU THR PRO GLY SER GLU GLN PHE SEQRES 2 C 231 LEU THR THR ASP ASP ARG GLN SER PRO SER ALA MET PRO SEQRES 3 C 231 ASN TYR GLU PRO THR PRO LEU ILE HIS ILE PRO GLY GLU SEQRES 4 C 231 VAL LYS ASN LEU LEU GLU ILE ALA GLN VAL ASP THR LEU SEQRES 5 C 231 ILE PRO LEU ASN ASN THR THR ASN THR THR GLY LEU GLY SEQRES 6 C 231 MET TYR ARG ILE PRO LEU VAL GLN ASN MET GLN GLY GLU SEQRES 7 C 231 GLN VAL PHE GLY PHE ARG LEU TYR LEU GLY ASP GLY VAL SEQRES 8 C 231 LEU LYS THR THR LEU LEU GLY GLU LEU CYS GLN TYR PHE SEQRES 9 C 231 THR HIS TRP ALA GLY SER LEU ARG LEU SER PHE MET TYR SEQRES 10 C 231 THR GLY PRO ALA LEU SER SER ALA LYS LEU LEU ILE ALA SEQRES 11 C 231 TYR THR PRO PRO GLY ALA GLN GLY PRO THR LYS ARG LYS SEQRES 12 C 231 GLU ALA MET LEU GLY THR HIS VAL VAL TRP ASP ILE GLY SEQRES 13 C 231 LEU GLN SER THR VAL VAL LEU ASN ILE PRO TRP THR SER SEQRES 14 C 231 GLY VAL GLN TYR ARG TYR THR ASP PRO ASP THR TYR THR SEQRES 15 C 231 SER ALA GLY PHE VAL SER CYS TRP TYR GLN THR SER LEU SEQRES 16 C 231 VAL LEU PRO PRO GLN THR GLN GLN THR VAL TYR MET LEU SEQRES 17 C 231 GLY PHE ILE SER ALA CYS PRO ASP PHE LYS LEU ARG LEU SEQRES 18 C 231 MET LYS ASP THR GLN SER ILE HIS GLN GLU HELIX 1 AA1 ASP D 35 SER D 39 5 5 HELIX 2 AA2 PRO D 50 GLU D 55 1 6 HELIX 3 AA3 TYR B 35 GLU B 37 5 3 HELIX 4 AA4 PRO B 56 ALA B 60 5 5 HELIX 5 AA5 PRO B 83 LYS B 87 5 5 HELIX 6 AA6 MET B 89 PHE B 98 1 10 HELIX 7 AA7 LEU B 143 HIS B 148 1 6 HELIX 8 AA8 PRO B 149 GLY B 153 5 5 HELIX 9 AA9 LEU B 176 PHE B 183 5 8 HELIX 10 AB1 ALA A 36 GLY A 40 5 5 HELIX 11 AB2 THR A 46 SER A 50 5 5 HELIX 12 AB3 GLY A 62 THR A 65 5 4 HELIX 13 AB4 THR A 66 GLY A 72 1 7 HELIX 14 AB5 ASN A 105 LEU A 109 5 5 HELIX 15 AB6 VAL A 110 MET A 118 1 9 HELIX 16 AB7 ASP A 165 SER A 170 5 6 HELIX 17 AB8 GLY A 214 LEU A 218 5 5 HELIX 18 AB9 ASN C 42 GLN C 48 1 7 HELIX 19 AC1 THR C 62 ARG C 68 5 7 HELIX 20 AC2 ASP C 89 LYS C 93 5 5 HELIX 21 AC3 THR C 95 GLN C 102 1 8 HELIX 22 AC4 LYS C 141 MET C 146 1 6 SHEET 1 AA1 2 GLU B 14 LEU B 18 0 SHEET 2 AA1 2 SER B 21 THR B 25 -1 O SER B 21 N LEU B 18 SHEET 1 AA2 5 ILE B 32 VAL B 33 0 SHEET 2 AA2 5 THR B 195 VAL B 200 1 O VAL B 199 N ILE B 32 SHEET 3 AA2 5 TYR B 106 GLN B 111 -1 N TYR B 106 O VAL B 200 SHEET 4 AA2 5 SER B 236 PRO B 245 -1 O THR B 242 N HIS B 109 SHEET 5 AA2 5 TYR B 64 THR B 72 -1 N LEU B 66 O ILE B 241 SHEET 1 AA3 5 ILE B 154 ASP B 155 0 SHEET 2 AA3 5 TRP B 78 LEU B 82 -1 N CYS B 79 O ILE B 154 SHEET 3 AA3 5 LEU B 217 ALA B 229 -1 O LEU B 219 N TRP B 80 SHEET 4 AA3 5 HIS B 118 PRO B 128 -1 N ILE B 127 O SER B 218 SHEET 5 AA3 5 HIS B 185 ASN B 189 -1 O GLN B 186 N VAL B 124 SHEET 1 AA4 2 HIS B 99 ARG B 103 0 SHEET 2 AA4 2 GLU B 249 ILE B 253 -1 O GLU B 249 N ARG B 103 SHEET 1 AA5 2 LEU A 18 SER A 20 0 SHEET 2 AA5 2 THR A 56 LEU A 57 -1 O THR A 56 N ALA A 19 SHEET 1 AA6 5 LEU A 34 THR A 35 0 SHEET 2 AA6 5 THR C 160 ILE C 165 -1 O THR C 160 N THR A 35 SHEET 3 AA6 5 LEU C 111 TYR C 117 -1 N LEU C 111 O ILE C 165 SHEET 4 AA6 5 VAL C 205 ALA C 213 -1 O SER C 212 N ARG C 112 SHEET 5 AA6 5 THR C 51 LEU C 52 -1 N THR C 51 O ILE C 211 SHEET 1 AA7 5 LEU A 34 THR A 35 0 SHEET 2 AA7 5 THR C 160 ILE C 165 -1 O THR C 160 N THR A 35 SHEET 3 AA7 5 LEU C 111 TYR C 117 -1 N LEU C 111 O ILE C 165 SHEET 4 AA7 5 VAL C 205 ALA C 213 -1 O SER C 212 N ARG C 112 SHEET 5 AA7 5 ILE C 69 LEU C 71 -1 N LEU C 71 O VAL C 205 SHEET 1 AA8 4 ALA A 75 ASN A 84 0 SHEET 2 AA8 4 THR A 237 PRO A 255 -1 O VAL A 243 N VAL A 77 SHEET 3 AA8 4 PHE A 119 SER A 135 -1 N ARG A 123 O ARG A 251 SHEET 4 AA8 4 TYR A 197 ASN A 198 -1 O TYR A 197 N VAL A 122 SHEET 1 AA9 4 SER A 183 VAL A 188 0 SHEET 2 AA9 4 PHE A 119 SER A 135 -1 N SER A 126 O VAL A 188 SHEET 3 AA9 4 THR A 237 PRO A 255 -1 O ARG A 251 N ARG A 123 SHEET 4 AA9 4 GLU C 39 VAL C 40 -1 O VAL C 40 N ALA A 252 SHEET 1 AB1 4 PHE A 99 LYS A 103 0 SHEET 2 AB1 4 SER A 223 VAL A 228 -1 O MET A 224 N TRP A 102 SHEET 3 AB1 4 THR A 147 ILE A 153 -1 N ILE A 153 O SER A 223 SHEET 4 AB1 4 SER A 175 ASN A 179 -1 O PHE A 178 N ILE A 148 SHEET 1 AB2 4 GLN C 79 ARG C 84 0 SHEET 2 AB2 4 PHE C 186 TYR C 191 -1 O CYS C 189 N VAL C 80 SHEET 3 AB2 4 ALA C 125 THR C 132 -1 N ALA C 130 O SER C 188 SHEET 4 AB2 4 THR C 149 ILE C 155 -1 O TRP C 153 N LEU C 127 SHEET 1 AB3 3 ARG C 174 TYR C 175 0 SHEET 2 AB3 3 HIS C 106 ALA C 108 -1 N TRP C 107 O ARG C 174 SHEET 3 AB3 3 LYS C 218 LEU C 219 -1 O LYS C 218 N ALA C 108 CISPEP 1 ALA D 42 GLY D 43 0 7.52 CISPEP 2 LEU B 82 PRO B 83 0 3.60 CISPEP 3 GLY A 192 ILE A 193 0 -0.01 CISPEP 4 GLY C 138 PRO C 139 0 3.04 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000