HEADER TRANSFERASE 14-AUG-19 6SK8 TITLE DELTAC3 C-TERMINAL TRUNCATION OF HSNMT1 IN COMPLEX WITH MYRCOA AND TITLE 2 GDCFSKPR SUBSTRATES COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE 1,TYPE I N- COMPND 5 MYRISTOYLTRANSFERASE,PEPTIDE N-MYRISTOYLTRANSFERASE 1; COMPND 6 EC: 2.3.1.97; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: APOPTOSIS-INDUCING FACTOR 3; COMPND 11 CHAIN: C, D; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NMT1, NMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 DERIVATIVE; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS NMT, MYRISTOYLTRANSFERASE TYPE1, ACYLTRANSFERASE, GNAT, GCN5-RELATED KEYWDS 2 N-ACETYLTRANSFERASES, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.DIAN,F.B.RIVIERE,T.ASENSIO,C.GIGLIONE,T.MEINNEL REVDAT 2 24-JAN-24 6SK8 1 REMARK REVDAT 1 18-MAR-20 6SK8 0 JRNL AUTH C.DIAN,I.PEREZ-DORADO,F.RIVIERE,T.ASENSIO,P.LEGRAND, JRNL AUTH 2 M.RITZEFELD,M.SHEN,E.COTA,T.MEINNEL,E.W.TATE,C.GIGLIONE JRNL TITL HIGH-RESOLUTION SNAPSHOTS OF HUMAN N-MYRISTOYLTRANSFERASE IN JRNL TITL 2 ACTION ILLUMINATE A MECHANISM PROMOTING N-TERMINAL LYS AND JRNL TITL 3 GLY MYRISTOYLATION. JRNL REF NAT COMMUN V. 11 1132 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32111831 JRNL DOI 10.1038/S41467-020-14847-3 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 68328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.4656 - 4.3390 1.00 2700 99 0.1608 0.1795 REMARK 3 2 4.3390 - 3.7908 1.00 2621 147 0.1564 0.1865 REMARK 3 3 3.7908 - 3.4443 1.00 2572 147 0.1686 0.1900 REMARK 3 4 3.4443 - 3.1975 1.00 2600 156 0.1726 0.1997 REMARK 3 5 3.1975 - 3.0090 1.00 2629 117 0.1934 0.2578 REMARK 3 6 3.0090 - 2.8583 1.00 2619 118 0.1984 0.2353 REMARK 3 7 2.8583 - 2.7339 1.00 2519 164 0.2112 0.2578 REMARK 3 8 2.7339 - 2.6286 1.00 2603 141 0.2186 0.2563 REMARK 3 9 2.6286 - 2.5379 1.00 2591 148 0.2321 0.3158 REMARK 3 10 2.5379 - 2.4586 1.00 2595 154 0.2315 0.2531 REMARK 3 11 2.4586 - 2.3883 1.00 2601 115 0.2287 0.3083 REMARK 3 12 2.3883 - 2.3254 1.00 2608 117 0.2319 0.3060 REMARK 3 13 2.3254 - 2.2687 1.00 2601 123 0.2383 0.2997 REMARK 3 14 2.2687 - 2.2171 1.00 2598 129 0.2446 0.2985 REMARK 3 15 2.2171 - 2.1699 1.00 2594 123 0.2483 0.3439 REMARK 3 16 2.1699 - 2.1265 1.00 2585 127 0.2565 0.2897 REMARK 3 17 2.1265 - 2.0864 1.00 2575 132 0.2643 0.2819 REMARK 3 18 2.0864 - 2.0491 1.00 2612 144 0.2651 0.3524 REMARK 3 19 2.0491 - 2.0144 1.00 2479 157 0.2856 0.3352 REMARK 3 20 2.0144 - 1.9819 1.00 2625 153 0.2899 0.3182 REMARK 3 21 1.9819 - 1.9514 1.00 2513 159 0.2822 0.3043 REMARK 3 22 1.9514 - 1.9227 1.00 2627 138 0.3008 0.3543 REMARK 3 23 1.9227 - 1.8956 1.00 2528 153 0.3087 0.3669 REMARK 3 24 1.8956 - 1.8700 1.00 2606 134 0.3101 0.3056 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6841 REMARK 3 ANGLE : 0.691 9313 REMARK 3 CHIRALITY : 0.051 1012 REMARK 3 PLANARITY : 0.005 1173 REMARK 3 DIHEDRAL : 15.924 4172 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SK8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103848. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978565 REMARK 200 MONOCHROMATOR : SI (111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68387 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 49.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.15900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 1.21900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 5O9V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG8K, 100MM SODIUM CITRATE PH REMARK 280 5.6, 100MM MGCL2, 100MM NACL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.31100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.12800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.31100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.12800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 95 REMARK 465 GLY A 96 REMARK 465 SER A 97 REMARK 465 GLU A 98 REMARK 465 PHE A 99 REMARK 465 SER A 100 REMARK 465 VAL A 101 REMARK 465 GLY B 95 REMARK 465 GLY B 96 REMARK 465 SER B 97 REMARK 465 GLU B 98 REMARK 465 PHE B 99 REMARK 465 SER B 100 REMARK 465 VAL B 101 REMARK 465 GLY B 102 REMARK 465 GLN B 103 REMARK 465 GLY B 104 REMARK 465 ARG B 316 REMARK 465 ASN B 317 REMARK 465 GLY C 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 103 CG CD OE1 NE2 REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 ASN A 133 CG OD1 ND2 REMARK 470 GLN A 154 CG CD OE1 NE2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 ASN A 186 CG OD1 ND2 REMARK 470 ARG A 328 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 409 CG OD1 ND2 REMARK 470 GLU A 463 CG CD OE1 OE2 REMARK 470 GLU B 110 CG CD OE1 OE2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 GLN B 154 CG CD OE1 NE2 REMARK 470 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 ASP B 185 CG OD1 OD2 REMARK 470 ARG B 258 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 310 CG CD CE NZ REMARK 470 MET B 318 CG SD CE REMARK 470 MET B 320 CG SD CE REMARK 470 GLN B 321 CG CD OE1 NE2 REMARK 470 LYS B 325 CG CD CE NZ REMARK 470 ARG B 328 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 331 CG CD OE1 OE2 REMARK 470 ARG C 9 CG CD NE CZ NH1 NH2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LEU A 175 N CA C O CB CG CD1 REMARK 480 LEU A 175 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 159 116.36 -160.44 REMARK 500 TYR A 180 -159.09 -93.66 REMARK 500 ASP A 191 73.52 -119.02 REMARK 500 TYR A 236 -117.09 54.45 REMARK 500 ILE A 381 -63.99 -129.80 REMARK 500 PHE A 422 -97.24 -112.60 REMARK 500 GLN A 428 -32.11 -134.57 REMARK 500 MET A 456 -130.24 50.73 REMARK 500 ALA B 106 80.66 80.34 REMARK 500 TYR B 180 -156.50 -82.86 REMARK 500 ASP B 191 63.46 -119.23 REMARK 500 TYR B 236 -117.95 57.64 REMARK 500 ILE B 381 -63.45 -136.13 REMARK 500 PHE B 422 -97.23 -109.93 REMARK 500 THR B 427 -30.72 -132.66 REMARK 500 MET B 456 -135.47 52.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1030 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1031 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A1032 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A1033 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH A1034 DISTANCE = 6.04 ANGSTROMS REMARK 525 HOH B 983 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B 984 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B 985 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 986 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B 987 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B 988 DISTANCE = 8.11 ANGSTROMS REMARK 525 HOH B 989 DISTANCE = 9.29 ANGSTROMS REMARK 525 HOH B 990 DISTANCE = 9.74 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYA A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MYA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 DBREF 6SK8 A 99 493 UNP P30419 NMT1_HUMAN 19 413 DBREF 6SK8 B 99 493 UNP P30419 NMT1_HUMAN 19 413 DBREF 6SK8 C 2 9 PDB 6SK8 6SK8 2 9 DBREF 6SK8 D 2 9 PDB 6SK8 6SK8 2 9 SEQADV 6SK8 GLY A 95 UNP P30419 EXPRESSION TAG SEQADV 6SK8 GLY A 96 UNP P30419 EXPRESSION TAG SEQADV 6SK8 SER A 97 UNP P30419 EXPRESSION TAG SEQADV 6SK8 GLU A 98 UNP P30419 EXPRESSION TAG SEQADV 6SK8 GLY B 95 UNP P30419 EXPRESSION TAG SEQADV 6SK8 GLY B 96 UNP P30419 EXPRESSION TAG SEQADV 6SK8 SER B 97 UNP P30419 EXPRESSION TAG SEQADV 6SK8 GLU B 98 UNP P30419 EXPRESSION TAG SEQRES 1 A 399 GLY GLY SER GLU PHE SER VAL GLY GLN GLY PRO ALA LYS SEQRES 2 A 399 THR MET GLU GLU ALA SER LYS ARG SER TYR GLN PHE TRP SEQRES 3 A 399 ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL VAL ASN SEQRES 4 A 399 THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN ILE ARG SEQRES 5 A 399 GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR TRP ASP SEQRES 6 A 399 ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS GLU LEU SEQRES 7 A 399 TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP ASP ASP SEQRES 8 A 399 ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE LEU LEU SEQRES 9 A 399 TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN TRP HIS SEQRES 10 A 399 CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU VAL GLY SEQRES 11 A 399 PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE TYR ASP SEQRES 12 A 399 THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU CYS VAL SEQRES 13 A 399 HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO VAL LEU SEQRES 14 A 399 ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU GLY ILE SEQRES 15 A 399 PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU PRO LYS SEQRES 16 A 399 PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER LEU ASN SEQRES 17 A 399 PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS LEU SER SEQRES 18 A 399 ARG ASN MET THR MET GLN ARG THR MET LYS LEU TYR ARG SEQRES 19 A 399 LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG PRO MET SEQRES 20 A 399 GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU LEU THR SEQRES 21 A 399 ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL MET SER SEQRES 22 A 399 GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN GLU ASN SEQRES 23 A 399 ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN GLY GLU SEQRES 24 A 399 VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO SER THR SEQRES 25 A 399 ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS ALA ALA SEQRES 26 A 399 TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO LEU LEU SEQRES 27 A 399 ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS MET LYS SEQRES 28 A 399 GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET GLU ASN SEQRES 29 A 399 LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE GLY ASP SEQRES 30 A 399 GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS CYS PRO SEQRES 31 A 399 SER MET GLY ALA GLU LYS VAL GLY LEU SEQRES 1 B 399 GLY GLY SER GLU PHE SER VAL GLY GLN GLY PRO ALA LYS SEQRES 2 B 399 THR MET GLU GLU ALA SER LYS ARG SER TYR GLN PHE TRP SEQRES 3 B 399 ASP THR GLN PRO VAL PRO LYS LEU GLY GLU VAL VAL ASN SEQRES 4 B 399 THR HIS GLY PRO VAL GLU PRO ASP LYS ASP ASN ILE ARG SEQRES 5 B 399 GLN GLU PRO TYR THR LEU PRO GLN GLY PHE THR TRP ASP SEQRES 6 B 399 ALA LEU ASP LEU GLY ASP ARG GLY VAL LEU LYS GLU LEU SEQRES 7 B 399 TYR THR LEU LEU ASN GLU ASN TYR VAL GLU ASP ASP ASP SEQRES 8 B 399 ASN MET PHE ARG PHE ASP TYR SER PRO GLU PHE LEU LEU SEQRES 9 B 399 TRP ALA LEU ARG PRO PRO GLY TRP LEU PRO GLN TRP HIS SEQRES 10 B 399 CYS GLY VAL ARG VAL VAL SER SER ARG LYS LEU VAL GLY SEQRES 11 B 399 PHE ILE SER ALA ILE PRO ALA ASN ILE HIS ILE TYR ASP SEQRES 12 B 399 THR GLU LYS LYS MET VAL GLU ILE ASN PHE LEU CYS VAL SEQRES 13 B 399 HIS LYS LYS LEU ARG SER LYS ARG VAL ALA PRO VAL LEU SEQRES 14 B 399 ILE ARG GLU ILE THR ARG ARG VAL HIS LEU GLU GLY ILE SEQRES 15 B 399 PHE GLN ALA VAL TYR THR ALA GLY VAL VAL LEU PRO LYS SEQRES 16 B 399 PRO VAL GLY THR CYS ARG TYR TRP HIS ARG SER LEU ASN SEQRES 17 B 399 PRO ARG LYS LEU ILE GLU VAL LYS PHE SER HIS LEU SER SEQRES 18 B 399 ARG ASN MET THR MET GLN ARG THR MET LYS LEU TYR ARG SEQRES 19 B 399 LEU PRO GLU THR PRO LYS THR ALA GLY LEU ARG PRO MET SEQRES 20 B 399 GLU THR LYS ASP ILE PRO VAL VAL HIS GLN LEU LEU THR SEQRES 21 B 399 ARG TYR LEU LYS GLN PHE HIS LEU THR PRO VAL MET SER SEQRES 22 B 399 GLN GLU GLU VAL GLU HIS TRP PHE TYR PRO GLN GLU ASN SEQRES 23 B 399 ILE ILE ASP THR PHE VAL VAL GLU ASN ALA ASN GLY GLU SEQRES 24 B 399 VAL THR ASP PHE LEU SER PHE TYR THR LEU PRO SER THR SEQRES 25 B 399 ILE MET ASN HIS PRO THR HIS LYS SER LEU LYS ALA ALA SEQRES 26 B 399 TYR SER PHE TYR ASN VAL HIS THR GLN THR PRO LEU LEU SEQRES 27 B 399 ASP LEU MET SER ASP ALA LEU VAL LEU ALA LYS MET LYS SEQRES 28 B 399 GLY PHE ASP VAL PHE ASN ALA LEU ASP LEU MET GLU ASN SEQRES 29 B 399 LYS THR PHE LEU GLU LYS LEU LYS PHE GLY ILE GLY ASP SEQRES 30 B 399 GLY ASN LEU GLN TYR TYR LEU TYR ASN TRP LYS CYS PRO SEQRES 31 B 399 SER MET GLY ALA GLU LYS VAL GLY LEU SEQRES 1 C 8 GLY ASP CYS PHE SER LYS PRO ARG SEQRES 1 D 8 GLY ASP CYS PHE SER LYS PRO ARG HET MYA A 501 63 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET CL A 505 1 HET MYA B 501 63 HET GOL B 502 6 HET GOL B 503 6 HET GOL B 504 6 HETNAM MYA TETRADECANOYL-COA HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN MYA MYRISTOYL-COA HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 MYA 2(C35 H62 N7 O17 P3 S) FORMUL 6 GOL 6(C3 H8 O3) FORMUL 9 CL CL 1- FORMUL 14 HOH *843(H2 O) HELIX 1 AA1 THR A 108 ARG A 115 1 8 HELIX 2 AA2 PHE A 119 GLN A 123 5 5 HELIX 3 AA3 ASP A 165 TYR A 180 1 16 HELIX 4 AA4 SER A 193 ARG A 202 1 10 HELIX 5 AA5 LEU A 207 GLN A 209 5 3 HELIX 6 AA6 LYS A 252 ARG A 255 5 4 HELIX 7 AA7 ARG A 258 GLU A 274 1 17 HELIX 8 AA8 ASN A 302 VAL A 309 1 8 HELIX 9 AA9 THR A 319 TYR A 327 1 9 HELIX 10 AB1 GLU A 342 LYS A 344 5 3 HELIX 11 AB2 ASP A 345 LEU A 357 1 13 HELIX 12 AB3 LYS A 358 PHE A 360 5 3 HELIX 13 AB4 SER A 367 TYR A 376 1 10 HELIX 14 AB5 PRO A 430 LYS A 445 1 16 HELIX 15 AB6 ASN A 458 GLU A 463 1 6 HELIX 16 AB7 GLY A 487 VAL A 491 5 5 HELIX 17 AB8 THR B 108 SER B 113 1 6 HELIX 18 AB9 PHE B 119 GLN B 123 5 5 HELIX 19 AC1 ASP B 165 TYR B 180 1 16 HELIX 20 AC2 SER B 193 ARG B 202 1 10 HELIX 21 AC3 LEU B 207 GLN B 209 5 3 HELIX 22 AC4 LYS B 252 ARG B 255 5 4 HELIX 23 AC5 VAL B 259 GLU B 274 1 16 HELIX 24 AC6 ASN B 302 VAL B 309 1 8 HELIX 25 AC7 THR B 319 TYR B 327 1 9 HELIX 26 AC8 GLU B 342 LYS B 344 5 3 HELIX 27 AC9 ASP B 345 LYS B 358 1 14 HELIX 28 AD1 SER B 367 TYR B 376 1 10 HELIX 29 AD2 PRO B 430 LYS B 445 1 16 HELIX 30 AD3 GLU B 457 PHE B 461 5 5 HELIX 31 AD4 GLY B 487 VAL B 491 5 5 SHEET 1 AA112 PHE A 156 ALA A 160 0 SHEET 2 AA112 HIS A 211 VAL A 216 -1 O ARG A 215 N THR A 157 SHEET 3 AA112 LEU A 222 ILE A 235 -1 O VAL A 223 N VAL A 214 SHEET 4 AA112 THR A 238 VAL A 250 -1 O THR A 238 N ILE A 235 SHEET 5 AA112 ALA A 279 ALA A 283 1 O VAL A 280 N VAL A 243 SHEET 6 AA112 GLY A 468 TYR A 479 -1 O TYR A 479 N ALA A 279 SHEET 7 AA112 GLY A 292 SER A 300 -1 N CYS A 294 O LEU A 474 SHEET 8 AA112 VAL A 449 LEU A 453 -1 O ALA A 452 N TRP A 297 SHEET 9 AA112 ALA A 418 SER A 421 1 N ALA A 419 O ASN A 451 SHEET 10 AA112 VAL A 394 THR A 402 -1 N TYR A 401 O TYR A 420 SHEET 11 AA112 ILE A 382 GLU A 388 -1 N PHE A 385 O LEU A 398 SHEET 12 AA112 LEU A 338 PRO A 340 -1 N ARG A 339 O VAL A 386 SHEET 1 AA2 4 PHE A 156 ALA A 160 0 SHEET 2 AA2 4 HIS A 211 VAL A 216 -1 O ARG A 215 N THR A 157 SHEET 3 AA2 4 LEU A 222 ILE A 235 -1 O VAL A 223 N VAL A 214 SHEET 4 AA2 4 LEU A 362 PRO A 364 -1 O THR A 363 N HIS A 234 SHEET 1 AA3 3 PHE A 188 PHE A 190 0 SHEET 2 AA3 3 SER A 405 ILE A 407 -1 O THR A 406 N ARG A 189 SHEET 3 AA3 3 SER A 415 LEU A 416 -1 O LEU A 416 N SER A 405 SHEET 1 AA412 PHE B 156 ALA B 160 0 SHEET 2 AA412 HIS B 211 VAL B 216 -1 O ARG B 215 N THR B 157 SHEET 3 AA412 LEU B 222 ILE B 235 -1 O VAL B 223 N VAL B 214 SHEET 4 AA412 THR B 238 VAL B 250 -1 O LYS B 240 N ILE B 233 SHEET 5 AA412 ALA B 279 ALA B 283 1 O VAL B 280 N VAL B 243 SHEET 6 AA412 GLY B 468 TYR B 479 -1 O GLN B 475 N ALA B 283 SHEET 7 AA412 GLY B 292 SER B 300 -1 N HIS B 298 O GLY B 468 SHEET 8 AA412 VAL B 449 LEU B 453 -1 O ALA B 452 N TRP B 297 SHEET 9 AA412 ALA B 418 SER B 421 1 N ALA B 419 O ASN B 451 SHEET 10 AA412 VAL B 394 THR B 402 -1 N TYR B 401 O TYR B 420 SHEET 11 AA412 ILE B 382 GLU B 388 -1 N VAL B 387 O THR B 395 SHEET 12 AA412 LEU B 338 PRO B 340 -1 N ARG B 339 O VAL B 386 SHEET 1 AA5 4 PHE B 156 ALA B 160 0 SHEET 2 AA5 4 HIS B 211 VAL B 216 -1 O ARG B 215 N THR B 157 SHEET 3 AA5 4 LEU B 222 ILE B 235 -1 O VAL B 223 N VAL B 214 SHEET 4 AA5 4 LEU B 362 PRO B 364 -1 O THR B 363 N HIS B 234 SHEET 1 AA6 3 PHE B 188 PHE B 190 0 SHEET 2 AA6 3 SER B 405 ILE B 407 -1 O THR B 406 N ARG B 189 SHEET 3 AA6 3 SER B 415 LEU B 416 -1 O LEU B 416 N SER B 405 CISPEP 1 PRO A 288 LYS A 289 0 -6.18 CISPEP 2 PRO B 288 LYS B 289 0 -7.84 SITE 1 AC1 34 ARG A 115 TYR A 117 GLN A 118 PHE A 119 SITE 2 AC1 34 TRP A 120 ASN A 179 TYR A 180 PHE A 247 SITE 3 AC1 34 LEU A 248 CYS A 249 VAL A 250 ARG A 255 SITE 4 AC1 34 SER A 256 LYS A 257 ARG A 258 VAL A 259 SITE 5 AC1 34 ALA A 260 PRO A 261 THR A 268 VAL A 271 SITE 6 AC1 34 PHE A 277 GLN A 278 TYR A 281 THR A 282 SITE 7 AC1 34 LEU A 287 TYR A 479 HOH A 623 HOH A 657 SITE 8 AC1 34 HOH A 692 HOH A 724 HOH A 752 HOH A 755 SITE 9 AC1 34 HOH A 814 HOH A 815 SITE 1 AC2 4 LYS A 305 HIS A 413 LYS A 414 SER A 415 SITE 1 AC3 5 HIS A 426 THR A 427 GLN A 428 THR A 429 SITE 2 AC3 5 PRO A 430 SITE 1 AC4 8 PRO A 126 LYS A 289 VAL A 291 LEU A 478 SITE 2 AC4 8 TRP A 481 LYS A 482 CYS A 483 HOH A 702 SITE 1 AC5 6 LEU A 161 LEU A 163 ARG A 202 TRP A 206 SITE 2 AC5 6 HIS A 211 HOH A 906 SITE 1 AC6 33 ARG B 115 TYR B 117 GLN B 118 PHE B 119 SITE 2 AC6 33 TRP B 120 ASN B 179 TYR B 180 VAL B 181 SITE 3 AC6 33 ASN B 246 PHE B 247 LEU B 248 CYS B 249 SITE 4 AC6 33 VAL B 250 ARG B 255 SER B 256 LYS B 257 SITE 5 AC6 33 ARG B 258 VAL B 259 ALA B 260 PRO B 261 SITE 6 AC6 33 THR B 268 PHE B 277 ALA B 279 TYR B 281 SITE 7 AC6 33 THR B 282 LEU B 287 TYR B 479 HOH B 627 SITE 8 AC6 33 HOH B 649 HOH B 669 HOH B 677 HOH B 809 SITE 9 AC6 33 HOH B 820 SITE 1 AC7 10 GLY A 275 ASN B 232 VAL B 365 MET B 366 SITE 2 AC7 10 SER B 367 GLU B 370 HOH B 610 HOH B 618 SITE 3 AC7 10 HOH B 664 HOH B 717 SITE 1 AC8 8 ASN A 232 HOH A 604 HOH A 637 LYS B 241 SITE 2 AC8 8 GLU B 274 GLY B 275 ILE B 276 HOH B 639 SITE 1 AC9 8 PRO B 126 LYS B 289 VAL B 291 LEU B 478 SITE 2 AC9 8 TRP B 481 LYS B 482 CYS B 483 HOH B 622 CRYST1 92.622 58.256 154.789 90.00 91.26 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010797 0.000000 0.000237 0.00000 SCALE2 0.000000 0.017166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006462 0.00000