HEADER BIOSYNTHETIC PROTEIN 21-AUG-19 6SME TITLE THE CRYSTAL STRUCTURE OF TYPE II DEHYDROQUINASE FROM PROPIONIBACTERIUM TITLE 2 ACNES COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-DEHYDROQUINATE DEHYDRATASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: 3-DEHYDROQUINASE,TYPE II DHQASE; COMPND 5 EC: 4.2.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CUTIBACTERIUM ACNES; SOURCE 3 ORGANISM_TAXID: 1747; SOURCE 4 GENE: AROQ, CHT92_10435, CP876_09935; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A+ KEYWDS SHIKIMATE PATHWAY DEHYDRATASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.J.LAPTHORN,A.W.ROSZAK REVDAT 2 24-JAN-24 6SME 1 JRNL REVDAT 1 08-JUL-20 6SME 0 JRNL AUTH M.RODIER,C.KEIJZER,J.MILNER,A.KARIMULLAH,A.W.ROSZAK, JRNL AUTH 2 L.D.BARRON,N.GADEGAARD,A.J.LAPTHORN,M.KADODWALA JRNL TITL BIOMACROMOLECULAR CHARGE CHIRALITY DETECTED USING CHIRAL JRNL TITL 2 PLASMONIC NANOSTRUCTURES JRNL REF NANOSCALE HORIZ. 2020 JRNL REFN ESSN 2055-6764 JRNL DOI 10.1039/C9NH00525K REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.LIU,Y.M.LIU,Q.L.SUN,C.Y.JIANG,S.J.LIU REMARK 1 TITL UNRAVELING THE KINETIC DIVERSITY OF MICROBIAL REMARK 1 TITL 2 3-DEHYDROQUINATE DEHYDRATASES OF SHIKIMATE PATHWAY. REMARK 1 REF AMB EXPRESS V. 5 7 2015 REMARK 1 REFN ESSN 2191-0855 REMARK 1 PMID 25852984 REMARK 1 DOI 10.1186/S13568-014-0087-Y REMARK 1 REFERENCE 2 REMARK 1 AUTH A.W.ROSZAK,D.A.ROBINSON,T.KRELL,I.S.HUNTER,M.FREDRICKSON, REMARK 1 AUTH 2 C.ABELL,J.R.COGGINS,A.J.LAPTHORN REMARK 1 TITL THE STRUCTURE AND MECHANISM OF THE TYPE II DEHYDROQUINASE REMARK 1 TITL 2 FROM STREPTOMYCES COELICOLOR. REMARK 1 REF STRUCTURE V. 10 493 2002 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 11937054 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 68108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3629 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1424 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 25.36 REMARK 3 BIN R VALUE (WORKING SET) : 0.4970 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4375 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 341 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.69000 REMARK 3 B22 (A**2) : 0.69000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.018 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.018 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.106 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4569 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4229 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6236 ; 1.592 ; 1.631 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9733 ; 1.437 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 581 ; 6.085 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 255 ;29.922 ;20.941 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 729 ;13.584 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;19.891 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 611 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5188 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 977 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 6 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 142 B 1 142 4341 0.090 0.050 REMARK 3 2 A 1 142 C 1 142 4380 0.090 0.050 REMARK 3 3 A 2 143 D 2 143 4187 0.090 0.050 REMARK 3 4 B 0 142 C 0 142 4377 0.080 0.050 REMARK 3 5 B 2 143 D 2 143 4174 0.070 0.050 REMARK 3 6 C 2 143 D 2 143 4173 0.060 0.050 REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : H, K, L REMARK 3 TWIN FRACTION : 0.710 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -K, -H, -L REMARK 3 TWIN FRACTION : 0.290 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): -36.5870 -21.7020 7.3140 REMARK 3 T TENSOR REMARK 3 T11: 0.0211 T22: 0.0194 REMARK 3 T33: 0.0442 T12: -0.0145 REMARK 3 T13: -0.0126 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 0.0922 L22: 0.1955 REMARK 3 L33: 0.6028 L12: -0.1057 REMARK 3 L13: -0.0808 L23: -0.0451 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.0108 S13: 0.0117 REMARK 3 S21: 0.0186 S22: -0.0138 S23: -0.0150 REMARK 3 S31: -0.0339 S32: 0.0449 S33: 0.0359 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 144 REMARK 3 ORIGIN FOR THE GROUP (A): -36.8780 -39.3750 -17.7660 REMARK 3 T TENSOR REMARK 3 T11: 0.0042 T22: 0.0417 REMARK 3 T33: 0.0300 T12: 0.0073 REMARK 3 T13: 0.0091 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.2322 L22: 0.3236 REMARK 3 L33: 0.3904 L12: -0.0155 REMARK 3 L13: 0.0337 L23: 0.0287 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.0580 S13: -0.0060 REMARK 3 S21: 0.0180 S22: 0.0108 S23: -0.0068 REMARK 3 S31: 0.0049 S32: 0.0482 S33: -0.0109 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 0 C 144 REMARK 3 ORIGIN FOR THE GROUP (A): -52.0150 -12.5160 -17.8090 REMARK 3 T TENSOR REMARK 3 T11: 0.0219 T22: 0.0598 REMARK 3 T33: 0.0547 T12: 0.0076 REMARK 3 T13: 0.0044 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 0.3482 L22: 0.3551 REMARK 3 L33: 0.2464 L12: -0.2268 REMARK 3 L13: 0.1278 L23: 0.0276 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: 0.0459 S13: 0.0578 REMARK 3 S21: -0.0333 S22: -0.1147 S23: -0.0314 REMARK 3 S31: 0.0020 S32: 0.0190 S33: 0.0791 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 0 D 144 REMARK 3 ORIGIN FOR THE GROUP (A): -48.5090 -28.9930 26.8460 REMARK 3 T TENSOR REMARK 3 T11: 0.0148 T22: 0.0138 REMARK 3 T33: 0.0418 T12: -0.0063 REMARK 3 T13: -0.0080 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.3393 L22: 0.1834 REMARK 3 L33: 0.2105 L12: 0.0139 REMARK 3 L13: -0.0336 L23: -0.0539 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: -0.0203 S13: 0.0133 REMARK 3 S21: -0.0072 S22: -0.0196 S23: -0.0045 REMARK 3 S31: -0.0007 S32: 0.0021 S33: 0.0300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6SME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103949. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOV 11, 2017 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 64.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 1.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 3N7A REMARK 200 REMARK 200 REMARK: RHOMBOHEDRAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULPHATE, 0.2 M SODIUM REMARK 280 CHLORIDE, 0.1M TRIS PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 60800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -297.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -128.82000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -64.41000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -111.56139 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 381 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 390 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 383 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 271 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLY B -2 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 GLU D 20 REMARK 465 PRO D 21 REMARK 465 GLN D 22 REMARK 465 ILE D 23 REMARK 465 TYR D 24 REMARK 465 GLY D 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 HIS C 0 CG ND1 CD2 CE1 NE2 REMARK 470 MET C 1 CG SD CE REMARK 470 GLU C 38 CG CD OE1 OE2 REMARK 470 LYS D 3 CG CD CE NZ REMARK 470 ARG D 18 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 -8.90 76.13 REMARK 500 ALA A 77 -134.05 48.30 REMARK 500 TYR A 82 -21.51 -158.00 REMARK 500 ARG A 108 -167.31 -100.57 REMARK 500 SER B 2 -47.47 -133.92 REMARK 500 ASN B 12 -10.29 78.05 REMARK 500 GLU B 20 65.34 37.65 REMARK 500 ALA B 77 -134.63 45.81 REMARK 500 TYR B 82 -21.23 -155.33 REMARK 500 ARG B 108 -165.62 -101.49 REMARK 500 ASN C 12 -8.32 77.35 REMARK 500 ARG C 19 -148.01 -83.27 REMARK 500 ALA C 77 -135.41 51.51 REMARK 500 TYR C 82 -21.54 -156.44 REMARK 500 ARG C 108 -164.69 -101.36 REMARK 500 ASN D 12 -10.05 78.38 REMARK 500 ALA D 77 -133.69 44.71 REMARK 500 TYR D 82 -20.76 -156.29 REMARK 500 ARG D 108 -165.40 -100.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 381 DISTANCE = 7.13 ANGSTROMS REMARK 525 HOH C 382 DISTANCE = 7.44 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 204 DBREF1 6SME A 1 143 UNP A0A371N5G0_CUTAC DBREF2 6SME A A0A371N5G0 1 143 DBREF1 6SME B 1 143 UNP A0A371N5G0_CUTAC DBREF2 6SME B A0A371N5G0 1 143 DBREF1 6SME C 1 143 UNP A0A371N5G0_CUTAC DBREF2 6SME C A0A371N5G0 1 143 DBREF1 6SME D 1 143 UNP A0A371N5G0_CUTAC DBREF2 6SME D A0A371N5G0 1 143 SEQADV 6SME GLY A -2 UNP A0A371N5G EXPRESSION TAG SEQADV 6SME SER A -1 UNP A0A371N5G EXPRESSION TAG SEQADV 6SME HIS A 0 UNP A0A371N5G EXPRESSION TAG SEQADV 6SME GLY B -2 UNP A0A371N5G EXPRESSION TAG SEQADV 6SME SER B -1 UNP A0A371N5G EXPRESSION TAG SEQADV 6SME HIS B 0 UNP A0A371N5G EXPRESSION TAG SEQADV 6SME GLY C -2 UNP A0A371N5G EXPRESSION TAG SEQADV 6SME SER C -1 UNP A0A371N5G EXPRESSION TAG SEQADV 6SME HIS C 0 UNP A0A371N5G EXPRESSION TAG SEQADV 6SME GLY D -2 UNP A0A371N5G EXPRESSION TAG SEQADV 6SME SER D -1 UNP A0A371N5G EXPRESSION TAG SEQADV 6SME HIS D 0 UNP A0A371N5G EXPRESSION TAG SEQRES 1 A 146 GLY SER HIS MET SER LYS GLN ILE LEU VAL LEU ASN GLY SEQRES 2 A 146 PRO ASN LEU GLY ARG LEU GLY ARG ARG GLU PRO GLN ILE SEQRES 3 A 146 TYR GLY THR THR THR HIS ASP ASP LEU ALA ALA ARG LEU SEQRES 4 A 146 ILE GLU TYR GLY ARG GLU LEU GLY LEU ASP VAL GLU VAL SEQRES 5 A 146 ARG GLN THR ASP SER GLU GLU ARG MET MET GLY TRP ILE SEQRES 6 A 146 HIS GLN ALA ALA ASP ASP ARG THR PRO VAL VAL ILE ASN SEQRES 7 A 146 PRO ALA ALA TRP SER HIS TYR ASN ILE ALA ILE ALA ASP SEQRES 8 A 146 ALA LEU VAL GLN LEU VAL ALA PRO CYS ILE GLU VAL HIS SEQRES 9 A 146 ILE SER ASN ILE ALA ALA ARG GLU GLU PHE ARG HIS HIS SEQRES 10 A 146 SER VAL VAL SER ALA HIS VAL THR GLY THR ILE ALA GLY SEQRES 11 A 146 LEU GLY LEU LYS GLY TYR GLU LEU ALA LEU SER TRP LEU SEQRES 12 A 146 ALA THR ASP SEQRES 1 B 146 GLY SER HIS MET SER LYS GLN ILE LEU VAL LEU ASN GLY SEQRES 2 B 146 PRO ASN LEU GLY ARG LEU GLY ARG ARG GLU PRO GLN ILE SEQRES 3 B 146 TYR GLY THR THR THR HIS ASP ASP LEU ALA ALA ARG LEU SEQRES 4 B 146 ILE GLU TYR GLY ARG GLU LEU GLY LEU ASP VAL GLU VAL SEQRES 5 B 146 ARG GLN THR ASP SER GLU GLU ARG MET MET GLY TRP ILE SEQRES 6 B 146 HIS GLN ALA ALA ASP ASP ARG THR PRO VAL VAL ILE ASN SEQRES 7 B 146 PRO ALA ALA TRP SER HIS TYR ASN ILE ALA ILE ALA ASP SEQRES 8 B 146 ALA LEU VAL GLN LEU VAL ALA PRO CYS ILE GLU VAL HIS SEQRES 9 B 146 ILE SER ASN ILE ALA ALA ARG GLU GLU PHE ARG HIS HIS SEQRES 10 B 146 SER VAL VAL SER ALA HIS VAL THR GLY THR ILE ALA GLY SEQRES 11 B 146 LEU GLY LEU LYS GLY TYR GLU LEU ALA LEU SER TRP LEU SEQRES 12 B 146 ALA THR ASP SEQRES 1 C 146 GLY SER HIS MET SER LYS GLN ILE LEU VAL LEU ASN GLY SEQRES 2 C 146 PRO ASN LEU GLY ARG LEU GLY ARG ARG GLU PRO GLN ILE SEQRES 3 C 146 TYR GLY THR THR THR HIS ASP ASP LEU ALA ALA ARG LEU SEQRES 4 C 146 ILE GLU TYR GLY ARG GLU LEU GLY LEU ASP VAL GLU VAL SEQRES 5 C 146 ARG GLN THR ASP SER GLU GLU ARG MET MET GLY TRP ILE SEQRES 6 C 146 HIS GLN ALA ALA ASP ASP ARG THR PRO VAL VAL ILE ASN SEQRES 7 C 146 PRO ALA ALA TRP SER HIS TYR ASN ILE ALA ILE ALA ASP SEQRES 8 C 146 ALA LEU VAL GLN LEU VAL ALA PRO CYS ILE GLU VAL HIS SEQRES 9 C 146 ILE SER ASN ILE ALA ALA ARG GLU GLU PHE ARG HIS HIS SEQRES 10 C 146 SER VAL VAL SER ALA HIS VAL THR GLY THR ILE ALA GLY SEQRES 11 C 146 LEU GLY LEU LYS GLY TYR GLU LEU ALA LEU SER TRP LEU SEQRES 12 C 146 ALA THR ASP SEQRES 1 D 146 GLY SER HIS MET SER LYS GLN ILE LEU VAL LEU ASN GLY SEQRES 2 D 146 PRO ASN LEU GLY ARG LEU GLY ARG ARG GLU PRO GLN ILE SEQRES 3 D 146 TYR GLY THR THR THR HIS ASP ASP LEU ALA ALA ARG LEU SEQRES 4 D 146 ILE GLU TYR GLY ARG GLU LEU GLY LEU ASP VAL GLU VAL SEQRES 5 D 146 ARG GLN THR ASP SER GLU GLU ARG MET MET GLY TRP ILE SEQRES 6 D 146 HIS GLN ALA ALA ASP ASP ARG THR PRO VAL VAL ILE ASN SEQRES 7 D 146 PRO ALA ALA TRP SER HIS TYR ASN ILE ALA ILE ALA ASP SEQRES 8 D 146 ALA LEU VAL GLN LEU VAL ALA PRO CYS ILE GLU VAL HIS SEQRES 9 D 146 ILE SER ASN ILE ALA ALA ARG GLU GLU PHE ARG HIS HIS SEQRES 10 D 146 SER VAL VAL SER ALA HIS VAL THR GLY THR ILE ALA GLY SEQRES 11 D 146 LEU GLY LEU LYS GLY TYR GLU LEU ALA LEU SER TRP LEU SEQRES 12 D 146 ALA THR ASP HET SO4 A 201 5 HET SO4 A 202 5 HET GOL A 203 6 HET SO4 B 201 5 HET GOL B 202 6 HET SO4 C 201 5 HET SO4 C 202 5 HET SO4 C 203 5 HET GOL C 204 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 SO4 6(O4 S 2-) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 14 HOH *341(H2 O) HELIX 1 AA1 ASN A 12 LEU A 16 5 5 HELIX 2 AA2 GLU A 20 GLY A 25 1 6 HELIX 3 AA3 THR A 28 LEU A 43 1 16 HELIX 4 AA4 SER A 54 ARG A 69 1 16 HELIX 5 AA5 PRO A 76 TYR A 82 5 7 HELIX 6 AA6 ASN A 83 VAL A 91 1 9 HELIX 7 AA7 ASN A 104 ARG A 108 5 5 HELIX 8 AA8 GLU A 109 HIS A 113 5 5 HELIX 9 AA9 VAL A 117 VAL A 121 5 5 HELIX 10 AB1 LEU A 130 ASP A 143 1 14 HELIX 11 AB2 ASN B 12 LEU B 16 5 5 HELIX 12 AB3 GLU B 20 GLY B 25 1 6 HELIX 13 AB4 THR B 28 LEU B 43 1 16 HELIX 14 AB5 SER B 54 ARG B 69 1 16 HELIX 15 AB6 PRO B 76 TYR B 82 5 7 HELIX 16 AB7 ASN B 83 VAL B 91 1 9 HELIX 17 AB8 ASN B 104 ARG B 108 5 5 HELIX 18 AB9 GLU B 109 HIS B 113 5 5 HELIX 19 AC1 VAL B 117 VAL B 121 5 5 HELIX 20 AC2 LEU B 130 ASP B 143 1 14 HELIX 21 AC3 ASN C 12 LEU C 16 5 5 HELIX 22 AC4 GLU C 20 GLY C 25 1 6 HELIX 23 AC5 THR C 28 LEU C 43 1 16 HELIX 24 AC6 SER C 54 ARG C 69 1 16 HELIX 25 AC7 PRO C 76 TYR C 82 5 7 HELIX 26 AC8 ASN C 83 VAL C 91 1 9 HELIX 27 AC9 ASN C 104 ARG C 108 5 5 HELIX 28 AD1 GLU C 109 HIS C 113 5 5 HELIX 29 AD2 VAL C 117 VAL C 121 5 5 HELIX 30 AD3 LEU C 130 ASP C 143 1 14 HELIX 31 AD4 ASN D 12 LEU D 16 5 5 HELIX 32 AD5 THR D 28 LEU D 43 1 16 HELIX 33 AD6 SER D 54 ARG D 69 1 16 HELIX 34 AD7 PRO D 76 TYR D 82 5 7 HELIX 35 AD8 ASN D 83 VAL D 91 1 9 HELIX 36 AD9 ASN D 104 ARG D 108 5 5 HELIX 37 AE1 GLU D 109 HIS D 113 5 5 HELIX 38 AE2 VAL D 117 VAL D 121 5 5 HELIX 39 AE3 LEU D 130 THR D 142 1 13 SHEET 1 AA110 LEU A 45 GLN A 51 0 SHEET 2 AA110 LYS A 3 ASN A 9 1 N VAL A 7 O GLU A 48 SHEET 3 AA110 VAL A 72 ASN A 75 1 O VAL A 73 N LEU A 8 SHEET 4 AA110 CYS A 97 HIS A 101 1 O ILE A 98 N ILE A 74 SHEET 5 AA110 GLY A 123 ALA A 126 1 O GLY A 123 N GLU A 99 SHEET 6 AA110 GLY D 123 ALA D 126 -1 O ALA D 126 N THR A 124 SHEET 7 AA110 CYS D 97 HIS D 101 1 N GLU D 99 O GLY D 123 SHEET 8 AA110 VAL D 72 ASN D 75 1 N ILE D 74 O ILE D 98 SHEET 9 AA110 GLN D 4 ASN D 9 1 N LEU D 8 O VAL D 73 SHEET 10 AA110 ASP D 46 GLN D 51 1 O GLU D 48 N VAL D 7 SHEET 1 AA2 5 LEU B 45 GLN B 51 0 SHEET 2 AA2 5 LYS B 3 ASN B 9 1 N VAL B 7 O GLU B 48 SHEET 3 AA2 5 VAL B 72 ASN B 75 1 O VAL B 73 N LEU B 8 SHEET 4 AA2 5 CYS B 97 HIS B 101 1 O ILE B 98 N ILE B 74 SHEET 5 AA2 5 GLY B 123 ALA B 126 1 O GLY B 123 N GLU B 99 SHEET 1 AA3 5 LEU C 45 GLN C 51 0 SHEET 2 AA3 5 LYS C 3 ASN C 9 1 N VAL C 7 O GLU C 48 SHEET 3 AA3 5 VAL C 72 ASN C 75 1 O VAL C 73 N LEU C 8 SHEET 4 AA3 5 CYS C 97 HIS C 101 1 O ILE C 98 N ILE C 74 SHEET 5 AA3 5 GLY C 123 ALA C 126 1 O ILE C 125 N GLU C 99 SITE 1 AC1 8 TYR A 24 ASN A 75 ALA A 77 HIS A 101 SITE 2 AC1 8 ILE A 102 SER A 103 HOH A 314 HOH A 341 SITE 1 AC2 3 ARG A 57 TRP A 61 HOH A 327 SITE 1 AC3 5 ASN A 12 ARG A 15 LEU A 16 ARG A 19 SITE 2 AC3 5 HOH A 314 SITE 1 AC4 3 ARG B 57 TRP B 61 HOH B 343 SITE 1 AC5 7 ARG B 19 TYR B 24 ASN B 75 HIS B 101 SITE 2 AC5 7 ILE B 102 SER B 103 ILE B 105 SITE 1 AC6 6 TYR C 24 ASN C 75 HIS C 101 ILE C 102 SITE 2 AC6 6 SER C 103 HOH C 349 SITE 1 AC7 5 ARG C 35 LEU C 130 LYS C 131 HOH C 319 SITE 2 AC7 5 HOH C 333 SITE 1 AC8 2 ARG C 57 TRP C 61 SITE 1 AC9 8 HIS B 113 HIS B 114 HOH B 344 HIS C 113 SITE 2 AC9 8 HIS C 114 HOH C 320 HOH C 340 HOH C 346 CRYST1 128.820 128.820 75.999 90.00 90.00 120.00 P 3 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007763 0.004482 0.000000 0.00000 SCALE2 0.000000 0.008964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013158 0.00000