HEADER MEMBRANE PROTEIN 22-AUG-19 6SML TITLE STRUCTURE OF THE RAGAB PEPTIDE IMPORTER IN THE 'OPEN-OPEN' STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN RAGB; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: RAGA PROTEIN; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: GLY-THR-GLY-GLY-SER-THR-GLY-THR-THR-SER-ALA-GLY; COMPND 9 CHAIN: C; COMPND 10 OTHER_DETAILS: PUTATIVE PEPTIDE SUBSTRATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS W83; SOURCE 3 ORGANISM_TAXID: 242619; SOURCE 4 STRAIN: KRAB; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS W83; SOURCE 7 ORGANISM_TAXID: 242619; SOURCE 8 STRAIN: KRAB; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS W83; SOURCE 11 ORGANISM_TAXID: 242619; SOURCE 12 STRAIN: KRAB KEYWDS BETA-BARREL, OMP, TONB-DEPENDENT, TRANSPORTER, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR J.B.R.WHITE,N.A.RANSON,B.VAN DEN BERG REVDAT 2 05-AUG-20 6SML 1 JRNL LINK REVDAT 1 20-MAY-20 6SML 0 JRNL AUTH M.MADEJ,J.B.R.WHITE,Z.NOWAKOWSKA,S.RAWSON,C.SCAVENIUS, JRNL AUTH 2 J.J.ENGHILD,G.P.BERETA,K.POTHULA,U.KLEINEKATHOEFER,A.BASLE, JRNL AUTH 3 N.A.RANSON,J.POTEMPA,B.VAN DEN BERG JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO OLIGOPEPTIDE JRNL TITL 2 ACQUISITION BY THE RAGAB TRANSPORTER FROM PORPHYROMONAS JRNL TITL 3 GINGIVALIS. JRNL REF NAT MICROBIOL V. 5 1016 2020 JRNL REFN ESSN 2058-5276 JRNL PMID 32393857 JRNL DOI 10.1038/S41564-020-0716-Y REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, GCTF, RELION, RELION, RELION, REMARK 3 RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 51849 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6SML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103945. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RAGAB WITH PUTATIVE PEPTIDE REMARK 245 SUBSTRATE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.75 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : 6 SECOND BLOT TIME, BLOT FORCE REMARK 245 6 REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : PUTATIVE PEPTIDE SUBSTRATE CO REMARK 245 -PURIFIED WITH THE COMPLEX REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 77.88 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 59620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 230.74040 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 230.98060 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 838 REMARK 465 ASP B 839 REMARK 465 GLY B 840 REMARK 465 ASN B 841 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 474 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N CYS A 20 C1 PLM A 602 1.87 REMARK 500 CB CYS A 20 CAW 5PL A 601 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 349 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP B 721 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 69 50.36 -93.75 REMARK 500 ASN A 138 -168.43 -127.81 REMARK 500 THR A 174 -60.99 -90.49 REMARK 500 THR A 303 45.03 -108.28 REMARK 500 PHE A 357 42.05 -103.29 REMARK 500 ASN A 420 26.71 -144.51 REMARK 500 LEU A 432 37.03 -98.35 REMARK 500 ARG A 489 -1.12 64.71 REMARK 500 GLN B 113 -67.90 -94.23 REMARK 500 LYS B 114 -178.07 179.43 REMARK 500 ALA B 174 -169.58 -117.10 REMARK 500 ASP B 183 56.24 38.65 REMARK 500 ALA B 211 -38.66 -130.03 REMARK 500 TYR B 215 52.52 -102.12 REMARK 500 GLN B 282 -6.81 72.11 REMARK 500 SER B 342 -159.64 -159.63 REMARK 500 ASN B 380 -159.49 -147.36 REMARK 500 TYR B 401 47.02 -87.57 REMARK 500 TYR B 501 45.20 -97.33 REMARK 500 ASP B 532 -167.15 -120.70 REMARK 500 SER B 576 33.00 -95.87 REMARK 500 LYS B 639 -50.41 -120.42 REMARK 500 SER B 662 47.16 -92.15 REMARK 500 GLU B 663 36.70 -97.40 REMARK 500 ALA B 690 -11.65 72.54 REMARK 500 GLU B 698 66.75 61.03 REMARK 500 TYR B 746 70.49 61.33 REMARK 500 LEU B 789 -151.03 -150.71 REMARK 500 PHE B 790 -151.96 -72.17 REMARK 500 PHE B 791 76.63 -66.41 REMARK 500 ASN B 800 58.05 33.86 REMARK 500 ASP B 857 35.92 -94.37 REMARK 500 LYS B 875 45.43 -144.37 REMARK 500 GLU B 900 45.32 -140.96 REMARK 500 ASN B 916 50.51 -91.85 REMARK 500 PHE B 990 -16.64 74.26 REMARK 500 ASN B 997 -21.50 69.11 REMARK 500 SER B1016 56.56 -96.68 REMARK 500 THR C 5 44.95 32.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 5PL A 601 REMARK 610 PLM A 602 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5PL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLM A 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6SLI RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAGAB FROM P. GINGIVALIS W83 (KRAB) REMARK 900 RELATED ID: 6SLJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAGAB FROM P. GINGIVALIS W83 WT REMARK 900 RELATED ID: 6SLN RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAGAB FROM P. GINGIVALIS W83 WT PLUS P21 REMARK 900 PEPTIDE REMARK 900 RELATED ID: EMD-10241 RELATED DB: EMDB REMARK 900 EM MAP OF RAGAB IN THE CLOSED-CLOSED STATE REMARK 900 RELATED ID: 6SM3 RELATED DB: PDB REMARK 900 EM STRUCTURE OF RAGAB IN THE CLOSED-CLOSED STATE REMARK 900 RELATED ID: EMD-10243 RELATED DB: EMDB REMARK 900 STRUCTURE OF THE RAGAB PEPTIDE IMPORTER IN THE 'OPEN-OPEN' STATE DBREF 6SML A 20 501 UNP F5H948 F5H948_PORGI 20 501 DBREF 6SML B 103 1017 UNP Q7MXJ7 Q7MXJ7_PORGI 103 1017 DBREF 6SML C 0 11 PDB 6SML 6SML 0 11 SEQRES 1 A 482 CYS GLU LEU ASP ARG ASP PRO GLU GLY LYS ASP PHE GLN SEQRES 2 A 482 GLN PRO TYR THR SER PHE VAL GLN THR LYS GLN ASN ARG SEQRES 3 A 482 ASP GLY LEU TYR ALA LEU LEU ARG ASN THR GLU ASN PRO SEQRES 4 A 482 ARG MET HIS PHE TYR GLN GLU LEU GLN SER ASP MET TYR SEQRES 5 A 482 CYS THR THR ILE THR ASP GLY ASN SER LEU ALA PRO PHE SEQRES 6 A 482 VAL ASN TRP ASP LEU GLY ILE LEU ASN ASP HIS GLY ARG SEQRES 7 A 482 ALA ASP GLU ASP GLU VAL SER GLY ILE ALA GLY TYR TYR SEQRES 8 A 482 PHE VAL TYR ASN ARG LEU ASN GLN GLN ALA ASN ALA PHE SEQRES 9 A 482 VAL ASN ASN THR GLU ALA ALA LEU GLN ASN GLN VAL TYR SEQRES 10 A 482 LYS ASN SER THR GLU ILE ALA ASN ALA LYS SER PHE LEU SEQRES 11 A 482 ALA GLU GLY LYS VAL LEU GLN ALA LEU ALA ILE TRP ARG SEQRES 12 A 482 LEU MET ASP ARG PHE SER PHE HIS GLU SER VAL THR GLU SEQRES 13 A 482 VAL ASN SER GLY ALA LYS ASP LEU GLY VAL ILE LEU LEU SEQRES 14 A 482 LYS GLU TYR ASN PRO GLY TYR ILE GLY PRO ARG ALA THR SEQRES 15 A 482 LYS ALA GLN CYS TYR ASP TYR ILE LEU SER ARG LEU SER SEQRES 16 A 482 GLU ALA ILE GLU VAL LEU PRO GLU ASN ARG GLU SER VAL SEQRES 17 A 482 LEU TYR VAL SER ARG ASP TYR ALA TYR ALA LEU ARG ALA SEQRES 18 A 482 ARG ILE TYR LEU ALA LEU GLY GLU TYR GLY LYS ALA ALA SEQRES 19 A 482 ALA ASP ALA LYS MET VAL VAL ASP LYS TYR PRO LEU ILE SEQRES 20 A 482 GLY ALA ALA ASP ALA SER GLU PHE GLU ASN ILE TYR ARG SEQRES 21 A 482 SER ASP ALA ASN ASN PRO GLU ILE ILE PHE ARG GLY PHE SEQRES 22 A 482 ALA SER ALA THR LEU GLY SER PHE THR ALA THR THR LEU SEQRES 23 A 482 ASN GLY ALA ALA PRO ALA GLY LYS ASP ILE LYS TYR ASN SEQRES 24 A 482 PRO SER ALA VAL PRO PHE GLN TRP VAL VAL ASP LEU TYR SEQRES 25 A 482 GLU ASN GLU ASP PHE ARG LYS SER VAL TYR ILE ALA LYS SEQRES 26 A 482 VAL VAL LYS LYS ASP LYS GLY TYR LEU VAL ASN LYS PHE SEQRES 27 A 482 LEU GLU ASP LYS ALA TYR ARG ASP VAL GLN ASP LYS PRO SEQRES 28 A 482 ASN LEU LYS VAL GLY ALA ARG TYR PHE SER VAL ALA GLU SEQRES 29 A 482 VAL TYR LEU ILE LEU VAL GLU SER ALA LEU GLN THR GLY SEQRES 30 A 482 ASP THR PRO THR ALA GLU LYS TYR LEU LYS ALA LEU SER SEQRES 31 A 482 LYS ALA ARG GLY ALA GLU VAL SER VAL VAL ASN MET GLU SEQRES 32 A 482 ALA LEU GLN ALA GLU ARG THR ARG GLU LEU ILE GLY GLU SEQRES 33 A 482 GLY SER ARG LEU ARG ASP MET VAL ARG TRP SER ILE PRO SEQRES 34 A 482 ASN ASN HIS ASP ALA PHE GLU THR GLN PRO GLY LEU GLU SEQRES 35 A 482 GLY PHE ALA ASN THR THR PRO LEU LYS ALA GLN ALA PRO SEQRES 36 A 482 VAL GLY PHE TYR ALA TYR THR TRP GLU PHE PRO GLN ARG SEQRES 37 A 482 ASP ARG GLN THR ASN PRO GLN LEU ILE LYS ASN TRP PRO SEQRES 38 A 482 ILE SEQRES 1 B 915 GLN VAL VAL VAL LEU GLY TYR GLY THR GLY GLN LYS LEU SEQRES 2 B 915 SER THR VAL SER GLY SER VAL ALA LYS VAL SER SER GLU SEQRES 3 B 915 LYS LEU ALA GLU LYS PRO VAL ALA ASN ILE MET ASP ALA SEQRES 4 B 915 LEU GLN GLY GLN VAL ALA GLY MET GLN VAL MET THR THR SEQRES 5 B 915 SER GLY ASP PRO THR ALA VAL ALA SER VAL GLU ILE HIS SEQRES 6 B 915 GLY THR GLY SER LEU GLY ALA SER SER ALA PRO LEU TYR SEQRES 7 B 915 ILE VAL ASP GLY MET GLN THR SER LEU ASP VAL VAL ALA SEQRES 8 B 915 THR MET ASN PRO ASN ASP PHE GLU SER MET SER VAL LEU SEQRES 9 B 915 LYS ASP ALA SER ALA THR SER ILE TYR GLY ALA ARG ALA SEQRES 10 B 915 ALA ASN GLY VAL VAL PHE ILE GLN THR LYS LYS GLY LYS SEQRES 11 B 915 MET SER GLU ARG GLY ARG ILE THR PHE ASN ALA SER TYR SEQRES 12 B 915 GLY ILE SER GLN ILE LEU ASN THR LYS PRO LEU ASP ASN SEQRES 13 B 915 MET MET THR GLY ASP GLU LEU LEU ASP PHE GLN VAL LYS SEQRES 14 B 915 ALA GLY PHE TRP GLY ASN ASN GLN THR VAL GLN LYS VAL SEQRES 15 B 915 LYS ASP MET ILE LEU ALA GLY ALA GLU ASP LEU TYR GLY SEQRES 16 B 915 ASN TYR ASP SER LEU LYS ASP GLU TYR GLY LYS THR LEU SEQRES 17 B 915 PHE PRO VAL ASP PHE ASN HIS ASP ALA ASP TRP LEU LYS SEQRES 18 B 915 ALA LEU PHE LYS THR ALA PRO THR SER GLN GLY ASP ILE SEQRES 19 B 915 SER PHE SER GLY GLY SER GLN GLY THR SER TYR TYR ALA SEQRES 20 B 915 SER ILE GLY TYR PHE ASP GLN GLU GLY MET ALA ARG GLU SEQRES 21 B 915 PRO ALA ASN PHE LYS ARG TYR SER GLY ARG LEU ASN PHE SEQRES 22 B 915 GLU SER ARG ILE ASN GLU TRP LEU LYS VAL GLY ALA ASN SEQRES 23 B 915 LEU SER GLY ALA ILE ALA ASN ARG ARG SER ALA ASP TYR SEQRES 24 B 915 PHE GLY LYS TYR TYR MET GLY SER GLY THR PHE GLY VAL SEQRES 25 B 915 LEU THR MET PRO ARG TYR TYR ASN PRO PHE ASP VAL ASN SEQRES 26 B 915 GLY ASP LEU ALA ASP VAL TYR TYR MET TYR GLY ALA THR SEQRES 27 B 915 ARG PRO SER MET THR GLU PRO TYR PHE ALA LYS MET ARG SEQRES 28 B 915 PRO PHE SER SER GLU SER HIS GLN ALA ASN VAL ASN GLY SEQRES 29 B 915 PHE ALA GLN ILE THR PRO ILE LYS GLY LEU THR LEU LYS SEQRES 30 B 915 ALA GLN ALA GLY VAL ASP ILE THR ASN THR ARG THR SER SEQRES 31 B 915 SER LYS ARG MET PRO ASN ASN PRO TYR ASP SER THR PRO SEQRES 32 B 915 LEU GLY GLU ARG ARG GLU ARG ALA TYR ARG ASP VAL SER SEQRES 33 B 915 LYS SER PHE THR ASN THR ALA GLU TYR LYS PHE SER ILE SEQRES 34 B 915 ASP GLU LYS HIS ASP LEU THR ALA LEU MET GLY HIS GLU SEQRES 35 B 915 TYR ILE GLU TYR GLU GLY ASP VAL ILE GLY ALA SER SER SEQRES 36 B 915 LYS GLY PHE GLU SER ASP LYS LEU MET LEU LEU SER GLN SEQRES 37 B 915 GLY LYS THR GLY ASN SER LEU SER LEU PRO GLU HIS ARG SEQRES 38 B 915 VAL ALA GLU TYR ALA TYR LEU SER PHE PHE SER ARG PHE SEQRES 39 B 915 ASN TYR GLY PHE ASP LYS TRP MET TYR ILE ASP PHE SER SEQRES 40 B 915 VAL ARG ASN ASP GLN SER SER ARG PHE GLY SER ASN ASN SEQRES 41 B 915 ARG SER ALA TRP PHE TYR SER VAL GLY GLY MET PHE ASP SEQRES 42 B 915 ILE TYR ASN LYS PHE ILE GLN GLU SER ASN TRP LEU SER SEQRES 43 B 915 ASP LEU ARG LEU LYS MET SER TYR GLY THR THR GLY ASN SEQRES 44 B 915 SER GLU ILE GLY ASN TYR ASN HIS GLN ALA LEU VAL THR SEQRES 45 B 915 VAL ASN ASN TYR THR GLU ASP ALA MET GLY LEU SER ILE SEQRES 46 B 915 SER THR ALA GLY ASN PRO ASP LEU SER TRP GLU LYS GLN SEQRES 47 B 915 SER GLN PHE ASN PHE GLY LEU ALA ALA GLY ALA PHE ASN SEQRES 48 B 915 ASN ARG LEU SER ALA GLU VAL ASP PHE TYR VAL ARG THR SEQRES 49 B 915 THR ASN ASP MET LEU ILE ASP VAL PRO MET PRO TYR ILE SEQRES 50 B 915 SER GLY PHE PHE SER GLN TYR GLN ASN VAL GLY SER MET SEQRES 51 B 915 LYS ASN THR GLY VAL ASP LEU SER LEU LYS GLY THR ILE SEQRES 52 B 915 TYR GLN ASN LYS ASP TRP ASN VAL TYR ALA SER ALA ASN SEQRES 53 B 915 PHE ASN TYR ASN ARG GLN GLU ILE THR LYS LEU PHE PHE SEQRES 54 B 915 GLY LEU ASN LYS TYR MET LEU PRO ASN THR GLY THR ILE SEQRES 55 B 915 TRP GLU ILE GLY TYR PRO ASN SER PHE TYR MET ALA GLU SEQRES 56 B 915 TYR ALA GLY ILE ASP LYS LYS THR GLY LYS GLN LEU TRP SEQRES 57 B 915 TYR VAL PRO GLY GLN VAL ASP ALA ASP GLY ASN LYS VAL SEQRES 58 B 915 THR THR SER GLN TYR SER ALA ASP LEU GLU THR ARG ILE SEQRES 59 B 915 ASP LYS SER VAL THR PRO PRO ILE THR GLY GLY PHE SER SEQRES 60 B 915 LEU GLY ALA SER TRP LYS GLY LEU SER LEU ASP ALA ASP SEQRES 61 B 915 PHE ALA TYR ILE VAL GLY LYS TRP MET ILE ASN ASN ASP SEQRES 62 B 915 ARG TYR PHE THR GLU ASN GLY GLY GLY LEU MET GLN LEU SEQRES 63 B 915 ASN LYS ASP LYS MET LEU LEU ASN ALA TRP THR GLU ASP SEQRES 64 B 915 ASN LYS GLU THR ASP VAL PRO LYS LEU GLY GLN SER PRO SEQRES 65 B 915 GLN PHE ASP THR HIS LEU LEU GLU ASN ALA SER PHE LEU SEQRES 66 B 915 ARG LEU LYS ASN LEU LYS LEU THR TYR VAL LEU PRO ASN SEQRES 67 B 915 SER LEU PHE ALA GLY GLN ASN VAL ILE GLY GLY ALA ARG SEQRES 68 B 915 VAL TYR LEU MET ALA ARG ASN LEU LEU THR VAL THR LYS SEQRES 69 B 915 TYR LYS GLY PHE ASP PRO GLU ALA GLY GLY ASN VAL GLY SEQRES 70 B 915 LYS ASN GLN TYR PRO ASN SER LYS GLN TYR VAL ALA GLY SEQRES 71 B 915 ILE GLN LEU SER PHE SEQRES 1 C 12 GLY THR GLY GLY SER THR GLY THR THR SER ALA GLY HET 5PL A 601 26 HET PLM A 602 8 HETNAM 5PL (1R,4S,6R)-6-({[2-(ACETYLAMINO)-2-DEOXY-ALPHA-D- HETNAM 2 5PL GLUCOPYRANOSYL]OXY}METHYL)-4-HYDROXY-1-{[(15- HETNAM 3 5PL METHYLHEXADECANOYL)OXY]METHYL}-4-OXIDO-7-OXO-3,5- HETNAM 4 5PL DIOXA-8-AZA-4-PHOSPHAHEPTACOS-1-YL 15- HETNAM 5 5PL METHYLHEXADECANOATE HETNAM PLM PALMITIC ACID FORMUL 4 5PL C67 H129 N2 O15 P FORMUL 5 PLM C16 H32 O2 HELIX 1 AA1 PHE A 38 GLU A 56 1 19 HELIX 2 AA2 HIS A 61 GLN A 67 1 7 HELIX 3 AA3 LEU A 81 ASN A 86 1 6 HELIX 4 AA4 GLY A 105 ASN A 133 1 29 HELIX 5 AA5 ASN A 138 PHE A 167 1 30 HELIX 6 AA6 THR A 201 GLU A 218 1 18 HELIX 7 AA7 SER A 231 GLY A 247 1 17 HELIX 8 AA8 GLU A 248 LYS A 257 1 10 HELIX 9 AA9 ASP A 270 ARG A 279 1 10 HELIX 10 AB1 PHE A 324 LEU A 330 1 7 HELIX 11 AB2 PHE A 336 TYR A 341 1 6 HELIX 12 AB3 VAL A 381 GLY A 396 1 16 HELIX 13 AB4 ASP A 397 GLY A 413 1 17 HELIX 14 AB5 GLU A 422 LEU A 432 1 11 HELIX 15 AB6 SER A 437 TRP A 445 1 9 HELIX 16 AB7 PHE A 477 THR A 481 5 5 HELIX 17 AB8 ILE B 138 GLN B 143 5 6 HELIX 18 AB9 SER B 188 ALA B 193 1 6 HELIX 19 AC1 THR B 194 MET B 195 5 2 HELIX 20 AC2 ASN B 196 ASN B 198 5 3 HELIX 21 AC3 THR B 253 ASP B 257 5 5 HELIX 22 AC4 THR B 261 ALA B 272 1 12 HELIX 23 AC5 ASP B 320 PHE B 326 1 7 HELIX 24 AC6 THR B 411 MET B 417 1 7 HELIX 25 AC7 THR B 445 ARG B 453 1 9 HELIX 26 AC8 ASP B 895 PHE B 898 5 4 HELIX 27 AC9 ASP B 911 LEU B 915 5 5 HELIX 28 AD1 ASP B 937 HIS B 939 5 3 SHEET 1 AA1 3 ASP A 30 PHE A 31 0 SHEET 2 AA1 3 LEU B 672 VAL B 675 -1 O VAL B 673 N ASP A 30 SHEET 3 AA1 3 LEU B 685 ILE B 687 -1 O SER B 686 N THR B 674 SHEET 1 AA2 2 TYR A 71 THR A 73 0 SHEET 2 AA2 2 ALA A 321 PRO A 323 -1 O VAL A 322 N CYS A 72 SHEET 1 AA3 2 ARG A 97 ALA A 98 0 SHEET 2 AA3 2 VAL A 103 SER A 104 -1 O SER A 104 N ARG A 97 SHEET 1 AA4 2 ILE A 287 ARG A 290 0 SHEET 2 AA4 2 ARG A 377 SER A 380 -1 O TYR A 378 N PHE A 289 SHEET 1 AA5 2 ALA A 308 ALA A 311 0 SHEET 2 AA5 2 ASP A 314 TYR A 317 -1 O ASP A 314 N ALA A 311 SHEET 1 AA6 2 ILE A 342 VAL A 346 0 SHEET 2 AA6 2 GLY A 351 VAL A 354 -1 O LEU A 353 N ALA A 343 SHEET 1 AA7 5 VAL B 122 VAL B 125 0 SHEET 2 AA7 5 PHE B 200 LEU B 206 -1 O VAL B 205 N ALA B 123 SHEET 3 AA7 5 VAL B 223 THR B 228 -1 O PHE B 225 N SER B 204 SHEET 4 AA7 5 LEU B 179 VAL B 182 1 N LEU B 179 O VAL B 224 SHEET 5 AA7 5 GLN B 186 THR B 187 -1 O THR B 187 N TYR B 180 SHEET 1 AA8 2 MET B 149 MET B 152 0 SHEET 2 AA8 2 SER B 163 ILE B 166 -1 O GLU B 165 N GLN B 150 SHEET 1 AA924 THR B 983 THR B 985 0 SHEET 2 AA924 PHE B 946 VAL B 957 -1 N LEU B 947 O VAL B 984 SHEET 3 AA924 ALA B 972 ARG B 979 -1 O LEU B 976 N LEU B 954 SHEET 4 AA924 SER B1006 LEU B1015 -1 O VAL B1010 N MET B 977 SHEET 5 AA924 ARG B 238 ILE B 250 -1 N PHE B 241 O LEU B1015 SHEET 6 AA924 ALA B 329 GLY B 341 -1 O SER B 339 N ARG B 238 SHEET 7 AA924 SER B 346 GLU B 357 -1 O ALA B 349 N PHE B 338 SHEET 8 AA924 ASN B 365 ASN B 380 -1 O ASN B 374 N TYR B 348 SHEET 9 AA924 LEU B 383 ARG B 396 -1 O ASN B 395 N LYS B 367 SHEET 10 AA924 PHE B 455 ILE B 470 -1 O GLN B 469 N LYS B 384 SHEET 11 AA924 THR B 477 ARG B 495 -1 O LEU B 478 N ILE B 470 SHEET 12 AA924 GLY B 507 PHE B 529 -1 O GLU B 526 N THR B 477 SHEET 13 AA924 ASP B 536 PHE B 560 -1 O GLU B 549 N VAL B 517 SHEET 14 AA924 GLU B 581 GLY B 599 -1 O ALA B 585 N GLY B 550 SHEET 15 AA924 MET B 604 SER B 615 -1 O PHE B 608 N PHE B 596 SHEET 16 AA924 SER B 624 ASP B 635 -1 O MET B 633 N TYR B 605 SHEET 17 AA924 LEU B 647 THR B 659 -1 O LEU B 652 N PHE B 634 SHEET 18 AA924 GLN B 700 ALA B 711 -1 O GLN B 700 N THR B 659 SHEET 19 AA924 LEU B 716 ASN B 728 -1 O THR B 726 N SER B 701 SHEET 20 AA924 SER B 751 ILE B 765 -1 O ASN B 754 N ARG B 725 SHEET 21 AA924 ASN B 772 LYS B 788 -1 O TYR B 781 N VAL B 757 SHEET 22 AA924 ILE B 864 SER B 873 -1 O GLY B 867 N ASN B 778 SHEET 23 AA924 LEU B 877 VAL B 887 -1 O TYR B 885 N GLY B 866 SHEET 24 AA924 PHE B 946 VAL B 957 -1 O ARG B 948 N ALA B 884 SHEET 1 AB1 2 VAL B 433 TYR B 434 0 SHEET 2 AB1 2 SER B 443 MET B 444 -1 O SER B 443 N TYR B 434 SHEET 1 AB2 2 LEU B 731 ILE B 732 0 SHEET 2 AB2 2 GLN B 747 ASN B 748 -1 O GLN B 747 N ILE B 732 SHEET 1 AB3 4 LYS B 795 TYR B 796 0 SHEET 2 AB3 4 THR B 803 GLU B 806 -1 O TRP B 805 N TYR B 796 SHEET 3 AB3 4 SER B 812 ALA B 816 -1 O SER B 812 N ILE B 804 SHEET 4 AB3 4 GLU B 853 SER B 859 -1 O ILE B 856 N PHE B 813 SHEET 1 AB4 2 TRP B 830 TYR B 831 0 SHEET 2 AB4 2 THR B 844 THR B 845 -1 O THR B 845 N TRP B 830 SHEET 1 AB5 3 LEU B 941 ASN B 943 0 SHEET 2 AB5 3 TRP B 890 ASN B 893 -1 N MET B 891 O GLU B 942 SHEET 3 AB5 3 ASN B 997 GLY B 999 1 O GLY B 999 N ILE B 892 LINK SG CYS A 20 CAW 5PL A 601 1555 1555 1.77 LINK N CYS A 20 O2 PLM A 602 1555 1555 1.30 SITE 1 AC1 4 CYS A 20 ASN B 523 HIS B 543 TYR B 545 SITE 1 AC2 1 CYS A 20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000