HEADER SPLICING 26-AUG-19 6SNJ TITLE SOLUTION STRUCTURE OF THE FUS/TLS RNA RECOGNITION MOTIF IN COMPLEX TITLE 2 WITH U1 SNRNA STEM LOOP III COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN FUS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 75 KDA DNA-PAIRING PROTEIN,ONCOGENE FUS,ONCOGENE TLS,POMP75, COMPND 5 TRANSLOCATED IN LIPOSARCOMA PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: U1 SNRNA STEM LOOP III, RNA (28-MER); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FUS, TLS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODON+; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: IN VITRO TRANSCRIPTION VECTOR PT7-FLUC(DELTAI); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 905932 KEYWDS SPLICING REGULATION, FUS-U1SNRNP, SPLICEOSOME, SPLICING EXPDTA SOLUTION NMR NUMMDL 18 AUTHOR S.CAMPAGNE,F.H.ALLAIN REVDAT 3 14-JUN-23 6SNJ 1 REMARK REVDAT 2 23-DEC-20 6SNJ 1 JRNL REVDAT 1 28-OCT-20 6SNJ 0 JRNL AUTH D.JUTZI,S.CAMPAGNE,R.SCHMIDT,S.REBER,J.MECHTERSHEIMER, JRNL AUTH 2 F.GYPAS,C.SCHWEINGRUBER,M.COLOMBO,C.VON SCHROETTER, JRNL AUTH 3 F.E.LOUGHLIN,A.DEVOY,E.HEDLUND,M.ZAVOLAN,F.H.ALLAIN, JRNL AUTH 4 M.D.RUEPP JRNL TITL ABERRANT INTERACTION OF FUS WITH THE U1 SNRNA PROVIDES A JRNL TITL 2 MOLECULAR MECHANISM OF FUS INDUCED AMYOTROPHIC LATERAL JRNL TITL 3 SCLEROSIS. JRNL REF NAT COMMUN V. 11 6341 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 33311468 JRNL DOI 10.1038/S41467-020-20191-3 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 12 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SNJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103976. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 60 REMARK 210 PRESSURE : ATM ATM REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-99% 15N] REMARK 210 FUS/TLS RNA RECOGNITION MOTIF REMARK 210 (260-390), 1.5 MM SL3, 10 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 90% H2O/10% REMARK 210 D2O; 1.2 MM [U-99% 13C; U-99% REMARK 210 15N] FUS/TLS RNA RECOGNITION REMARK 210 MOTIF (260-390), 1.5 MM SL3, 10 REMARK 210 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 100% REMARK 210 D2O; 1 MM FUS/TLS RNA REMARK 210 RECOGNITION MOTIF (260-390), 0.8 REMARK 210 MM [U-13C; U-15N] SL3, 10 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 100% D2O; 1 REMARK 210 MM FUS/TLS RNA RECOGNITION MOTIF REMARK 210 (260-390), 1 MM SL3, 10 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D HCCH-TOCSY; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 2D 1H-1H NOESY; 2D F1FF2F REMARK 210 NOESY; 2D F2F NOEY; 2D F1FF2F REMARK 210 TOCSY; 3D 1H-13C FILTERED EDITED REMARK 210 NOESY HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.98, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 18 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 A B 104 O4' - C1' - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 A B 104 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 5 A B 104 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 7 A B 104 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 9 A B 104 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 10 A B 104 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 11 A B 104 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 12 A B 104 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 14 A B 104 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 15 A B 104 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 16 A B 104 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 17 A B 104 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 268 25.16 -71.81 REMARK 500 1 GLN A 279 -109.15 -101.72 REMARK 500 1 SER A 282 -35.53 -156.18 REMARK 500 1 LYS A 316 -24.24 -147.03 REMARK 500 1 THR A 330 -22.60 -149.67 REMARK 500 1 ASN A 376 -41.80 -154.13 REMARK 500 2 ASN A 263 -173.99 -68.20 REMARK 500 2 PRO A 268 27.90 -70.19 REMARK 500 2 ASP A 270 27.57 -146.82 REMARK 500 2 GLN A 279 -80.51 -85.97 REMARK 500 2 ASP A 280 14.25 49.63 REMARK 500 2 SER A 282 -35.84 -155.64 REMARK 500 2 LYS A 316 -1.41 -141.43 REMARK 500 2 THR A 330 -24.34 -150.18 REMARK 500 2 TRP A 353 -60.35 -92.65 REMARK 500 2 PHE A 359 -37.38 -130.66 REMARK 500 2 SER A 360 15.59 -144.37 REMARK 500 2 ASN A 376 -41.68 -154.42 REMARK 500 3 ASN A 263 -174.29 -68.67 REMARK 500 3 PRO A 268 20.96 -67.67 REMARK 500 3 ASP A 276 22.82 -150.19 REMARK 500 3 GLN A 279 -84.53 -90.13 REMARK 500 3 ASP A 280 17.35 48.96 REMARK 500 3 SER A 282 -30.20 -149.53 REMARK 500 3 ASN A 284 54.41 -92.11 REMARK 500 3 THR A 330 -24.29 -150.68 REMARK 500 3 TRP A 353 -60.37 -93.13 REMARK 500 3 PHE A 359 -39.41 -131.45 REMARK 500 3 SER A 360 19.69 -141.53 REMARK 500 3 ASN A 376 -41.37 -157.05 REMARK 500 4 PRO A 268 19.84 -68.44 REMARK 500 4 GLN A 279 -81.84 -90.89 REMARK 500 4 ASP A 280 15.47 47.95 REMARK 500 4 SER A 282 -32.55 -156.75 REMARK 500 4 ASN A 285 17.99 -158.66 REMARK 500 4 THR A 330 -18.93 -157.20 REMARK 500 4 ASN A 376 -41.64 -154.94 REMARK 500 5 PRO A 268 22.60 -71.17 REMARK 500 5 ASP A 276 20.70 -146.10 REMARK 500 5 GLN A 279 -111.50 -103.34 REMARK 500 5 SER A 282 -36.62 -154.27 REMARK 500 5 THR A 330 -20.44 -156.22 REMARK 500 5 SER A 360 11.05 -145.00 REMARK 500 5 ASN A 376 -43.55 -155.45 REMARK 500 6 ASN A 263 -174.97 -68.18 REMARK 500 6 PRO A 268 18.85 -67.97 REMARK 500 6 GLN A 279 -83.01 -89.89 REMARK 500 6 ASP A 280 15.99 49.22 REMARK 500 6 SER A 282 -33.70 -149.39 REMARK 500 6 ASN A 284 35.15 -95.72 REMARK 500 REMARK 500 THIS ENTRY HAS 178 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 325 0.09 SIDE CHAIN REMARK 500 1 A B 104 0.06 SIDE CHAIN REMARK 500 2 TYR A 325 0.10 SIDE CHAIN REMARK 500 3 TYR A 325 0.09 SIDE CHAIN REMARK 500 4 TYR A 325 0.09 SIDE CHAIN REMARK 500 7 TYR A 325 0.08 SIDE CHAIN REMARK 500 8 TYR A 325 0.09 SIDE CHAIN REMARK 500 9 TYR A 325 0.09 SIDE CHAIN REMARK 500 11 TYR A 325 0.10 SIDE CHAIN REMARK 500 12 TYR A 325 0.08 SIDE CHAIN REMARK 500 13 TYR A 325 0.09 SIDE CHAIN REMARK 500 13 U B 105 0.08 SIDE CHAIN REMARK 500 14 TYR A 325 0.10 SIDE CHAIN REMARK 500 16 TYR A 325 0.09 SIDE CHAIN REMARK 500 16 A B 104 0.06 SIDE CHAIN REMARK 500 18 TYR A 325 0.09 SIDE CHAIN REMARK 500 18 U B 105 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34427 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE FUS/TLS RNA RECOGNITION MOTIF IN COMPLEX REMARK 900 WITH U1 SNRNA STEM LOOP III DBREF 6SNJ A 260 390 UNP P35637 FUS_HUMAN 259 389 DBREF 6SNJ B 91 118 PDB 6SNJ 6SNJ 91 118 SEQRES 1 A 131 GLY GLY PHE ASN LYS PHE GLY GLY PRO ARG ASP GLN GLY SEQRES 2 A 131 SER ARG HIS ASP SER GLU GLN ASP ASN SER ASP ASN ASN SEQRES 3 A 131 THR ILE PHE VAL GLN GLY LEU GLY GLU ASN VAL THR ILE SEQRES 4 A 131 GLU SER VAL ALA ASP TYR PHE LYS GLN ILE GLY ILE ILE SEQRES 5 A 131 LYS THR ASN LYS LYS THR GLY GLN PRO MET ILE ASN LEU SEQRES 6 A 131 TYR THR ASP ARG GLU THR GLY LYS LEU LYS GLY GLU ALA SEQRES 7 A 131 THR VAL SER PHE ASP ASP PRO PRO SER ALA LYS ALA ALA SEQRES 8 A 131 ILE ASP TRP PHE ASP GLY LYS GLU PHE SER GLY ASN PRO SEQRES 9 A 131 ILE LYS VAL SER PHE ALA THR ARG ARG ALA ASP PHE ASN SEQRES 10 A 131 ARG GLY GLY GLY ASN GLY ARG GLY GLY ARG GLY ARG GLY SEQRES 11 A 131 GLY SEQRES 1 B 28 G G G A U U U C C C C A A SEQRES 2 B 28 A U G U G G G A A A C U C SEQRES 3 B 28 C C HELIX 1 AA1 GLY A 266 ASP A 270 5 5 HELIX 2 AA2 GLY A 272 ASP A 276 5 5 HELIX 3 AA3 THR A 297 LYS A 306 1 10 HELIX 4 AA4 ASP A 343 ASP A 355 1 13 HELIX 5 AA5 ARG A 371 PHE A 375 5 5 SHEET 1 AA1 4 ILE A 322 THR A 326 0 SHEET 2 AA1 4 LEU A 333 SER A 340 -1 O GLU A 336 N TYR A 325 SHEET 3 AA1 4 THR A 286 GLN A 290 -1 N VAL A 289 O ALA A 337 SHEET 4 AA1 4 LYS A 365 PHE A 368 -1 O SER A 367 N PHE A 288 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1