HEADER TRANSFERASE 29-AUG-19 6SOI TITLE FRAGMENT N13788A IN COMPLEX WITH MAP KINASE P38-ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAPK 14,CRK1,MITOGEN-ACTIVATED PROTEIN KINASE P38 ALPHA,MAP COMPND 5 KINASE P38 ALPHA; COMPND 6 EC: 2.7.11.24; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MAPK14, CRK1, CSBP1, CSBP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FBDD, FRAGMENT BASED DRUG DESIGN, P38, MAPK14, KINASE, TRANSFERASE., KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.E.NICHOLS,G.F.DE NICOLA REVDAT 3 24-JAN-24 6SOI 1 REMARK REVDAT 2 14-OCT-20 6SOI 1 JRNL REVDAT 1 02-OCT-19 6SOI 0 JRNL AUTH C.NICHOLS,J.NG,A.KESHU,G.KELLY,M.R.CONTE,M.S.MARBER, JRNL AUTH 2 F.FRATERNALI,G.F.DE NICOLA JRNL TITL MINING THE PDB FOR TRACTABLE CASES WHERE X-RAY JRNL TITL 2 CRYSTALLOGRAPHY COMBINED WITH FRAGMENT SCREENS CAN BE USED JRNL TITL 3 TO SYSTEMATICALLY DESIGN PROTEIN-PROTEIN INHIBITORS: TWO JRNL TITL 4 TEST CASES ILLUSTRATED BY IL1 BETA-IL1R AND P38 ALPHA-TAB1 JRNL TITL 5 COMPLEXES. JRNL REF J.MED.CHEM. V. 63 7559 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32543856 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00403 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 70481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 6658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 70.9800 - 4.8200 0.96 4280 217 0.1819 0.1900 REMARK 3 2 4.8200 - 3.8200 1.00 4382 249 0.1554 0.1821 REMARK 3 3 3.8200 - 3.3400 1.00 4472 219 0.1651 0.1733 REMARK 3 4 3.3400 - 3.0300 0.94 4140 225 0.1815 0.1866 REMARK 3 5 3.0300 - 2.8200 1.00 4478 187 0.1951 0.2693 REMARK 3 6 2.8200 - 2.6500 0.99 4397 233 0.1934 0.2197 REMARK 3 7 2.6500 - 2.5200 0.99 4391 239 0.1954 0.2233 REMARK 3 8 2.5200 - 2.4100 0.99 4361 227 0.1870 0.2202 REMARK 3 9 2.4100 - 2.3200 0.99 4349 233 0.1908 0.2046 REMARK 3 10 2.3200 - 2.2400 0.95 4316 213 0.1940 0.2266 REMARK 3 11 2.2400 - 2.1700 0.95 4198 181 0.1977 0.2178 REMARK 3 12 2.1700 - 2.1000 0.98 4379 222 0.1949 0.2303 REMARK 3 13 2.1000 - 2.0500 0.98 4385 215 0.2009 0.2214 REMARK 3 14 2.0500 - 2.0000 0.97 4261 227 0.2126 0.2794 REMARK 3 15 2.0000 - 1.9500 0.97 4331 211 0.2272 0.2408 REMARK 3 16 1.9500 - 1.9100 0.96 4170 260 0.2403 0.2761 REMARK 3 17 1.9100 - 1.8700 0.96 4311 225 0.2557 0.2721 REMARK 3 18 1.8700 - 1.8400 0.96 4181 243 0.2662 0.3149 REMARK 3 19 1.8400 - 1.8000 0.96 4303 269 0.2894 0.3440 REMARK 3 20 1.8000 - 1.7700 0.94 4131 214 0.3086 0.3094 REMARK 3 21 1.7700 - 1.7500 0.87 3854 198 0.3339 0.3517 REMARK 3 22 1.7500 - 1.7200 0.93 4093 229 0.3557 0.3363 REMARK 3 23 1.7200 - 1.6900 0.93 4108 222 0.3493 0.3353 REMARK 3 24 1.6900 - 1.6700 0.93 4156 230 0.3771 0.4120 REMARK 3 25 1.6700 - 1.6500 0.93 4075 195 0.3842 0.4246 REMARK 3 26 1.6500 - 1.6300 0.92 4076 215 0.4000 0.3914 REMARK 3 27 1.6300 - 1.6100 0.92 4125 185 0.4079 0.4175 REMARK 3 28 1.6100 - 1.5900 0.91 4053 210 0.4223 0.4356 REMARK 3 29 1.5900 - 1.5700 0.91 3970 242 0.4194 0.3860 REMARK 3 30 1.5700 - 1.5500 0.90 4010 223 0.4480 0.4598 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.238 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.544 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2822 REMARK 3 ANGLE : 0.810 3841 REMARK 3 CHIRALITY : 0.052 434 REMARK 3 PLANARITY : 0.005 500 REMARK 3 DIHEDRAL : 2.207 2309 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SOI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292104051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71998 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 70.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6SO1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27.5% PEG3350, 0.1M MAGNESIUM REMARK 280 CHLORIDE, 0.1M MAGNESIUM SULPHATE, 0.1M BIS-TRIS PROPANE, 10% REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.93250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.30650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.86050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.30650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.93250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.86050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 GLN A -9 REMARK 465 ASP A -8 REMARK 465 PRO A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLY A 33 REMARK 465 ALA A 34 REMARK 465 ARG A 173 REMARK 465 LEU A 353 REMARK 465 ASP A 354 REMARK 465 GLN A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 MET A 358 REMARK 465 GLU A 359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 ARG A 10 CZ NH1 NH2 REMARK 470 LEU A 13 CD1 CD2 REMARK 470 ASN A 14 CG OD1 ND2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 SER A 32 OG REMARK 470 TYR A 35 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 45 CE NZ REMARK 470 ARG A 49 CD NE CZ NH1 NH2 REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 63 CD1 REMARK 470 ARG A 67 CD NE CZ NH1 NH2 REMARK 470 GLU A 97 CD OE1 OE2 REMARK 470 GLU A 98 CD OE1 OE2 REMARK 470 ILE A 116 CG1 CG2 CD1 REMARK 470 VAL A 117 CG1 CG2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 ARG A 149 NE CZ NH1 NH2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 ARG A 237 NE CZ NH1 NH2 REMARK 470 LYS A 248 CD CE NZ REMARK 470 GLU A 253 CD OE1 OE2 REMARK 470 ILE A 346 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 100 -33.12 -141.02 REMARK 500 ARG A 149 -13.42 83.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 155 OD1 REMARK 620 2 ASP A 168 OD2 95.9 REMARK 620 3 HOH A 529 O 92.9 97.4 REMARK 620 4 HOH A 612 O 86.1 175.6 86.4 REMARK 620 5 HOH A 642 O 87.8 87.7 174.7 88.4 REMARK 620 6 HOH A 658 O 175.2 88.7 88.1 89.2 90.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LOK A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 410 DBREF 6SOI A 1 359 UNP P47811 MK14_MOUSE 1 359 SEQADV 6SOI MET A -20 UNP P47811 INITIATING METHIONINE SEQADV 6SOI GLY A -19 UNP P47811 EXPRESSION TAG SEQADV 6SOI SER A -18 UNP P47811 EXPRESSION TAG SEQADV 6SOI SER A -17 UNP P47811 EXPRESSION TAG SEQADV 6SOI HIS A -16 UNP P47811 EXPRESSION TAG SEQADV 6SOI HIS A -15 UNP P47811 EXPRESSION TAG SEQADV 6SOI HIS A -14 UNP P47811 EXPRESSION TAG SEQADV 6SOI HIS A -13 UNP P47811 EXPRESSION TAG SEQADV 6SOI HIS A -12 UNP P47811 EXPRESSION TAG SEQADV 6SOI HIS A -11 UNP P47811 EXPRESSION TAG SEQADV 6SOI SER A -10 UNP P47811 EXPRESSION TAG SEQADV 6SOI GLN A -9 UNP P47811 EXPRESSION TAG SEQADV 6SOI ASP A -8 UNP P47811 EXPRESSION TAG SEQADV 6SOI PRO A -7 UNP P47811 EXPRESSION TAG SEQADV 6SOI GLU A -6 UNP P47811 EXPRESSION TAG SEQADV 6SOI ASN A -5 UNP P47811 EXPRESSION TAG SEQADV 6SOI LEU A -4 UNP P47811 EXPRESSION TAG SEQADV 6SOI TYR A -3 UNP P47811 EXPRESSION TAG SEQADV 6SOI PHE A -2 UNP P47811 EXPRESSION TAG SEQADV 6SOI GLN A -1 UNP P47811 EXPRESSION TAG SEQADV 6SOI GLY A 0 UNP P47811 EXPRESSION TAG SEQRES 1 A 380 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 380 PRO GLU ASN LEU TYR PHE GLN GLY MET SER GLN GLU ARG SEQRES 3 A 380 PRO THR PHE TYR ARG GLN GLU LEU ASN LYS THR ILE TRP SEQRES 4 A 380 GLU VAL PRO GLU ARG TYR GLN ASN LEU SER PRO VAL GLY SEQRES 5 A 380 SER GLY ALA TYR GLY SER VAL CYS ALA ALA PHE ASP THR SEQRES 6 A 380 LYS THR GLY HIS ARG VAL ALA VAL LYS LYS LEU SER ARG SEQRES 7 A 380 PRO PHE GLN SER ILE ILE HIS ALA LYS ARG THR TYR ARG SEQRES 8 A 380 GLU LEU ARG LEU LEU LYS HIS MET LYS HIS GLU ASN VAL SEQRES 9 A 380 ILE GLY LEU LEU ASP VAL PHE THR PRO ALA ARG SER LEU SEQRES 10 A 380 GLU GLU PHE ASN ASP VAL TYR LEU VAL THR HIS LEU MET SEQRES 11 A 380 GLY ALA ASP LEU ASN ASN ILE VAL LYS CYS GLN LYS LEU SEQRES 12 A 380 THR ASP ASP HIS VAL GLN PHE LEU ILE TYR GLN ILE LEU SEQRES 13 A 380 ARG GLY LEU LYS TYR ILE HIS SER ALA ASP ILE ILE HIS SEQRES 14 A 380 ARG ASP LEU LYS PRO SER ASN LEU ALA VAL ASN GLU ASP SEQRES 15 A 380 CYS GLU LEU LYS ILE LEU ASP PHE GLY LEU ALA ARG HIS SEQRES 16 A 380 THR ASP ASP GLU MET THR GLY TYR VAL ALA THR ARG TRP SEQRES 17 A 380 TYR ARG ALA PRO GLU ILE MET LEU ASN TRP MET HIS TYR SEQRES 18 A 380 ASN GLN THR VAL ASP ILE TRP SER VAL GLY CYS ILE MET SEQRES 19 A 380 ALA GLU LEU LEU THR GLY ARG THR LEU PHE PRO GLY THR SEQRES 20 A 380 ASP HIS ILE ASP GLN LEU LYS LEU ILE LEU ARG LEU VAL SEQRES 21 A 380 GLY THR PRO GLY ALA GLU LEU LEU LYS LYS ILE SER SER SEQRES 22 A 380 GLU SER ALA ARG ASN TYR ILE GLN SER LEU ALA GLN MET SEQRES 23 A 380 PRO LYS MET ASN PHE ALA ASN VAL PHE ILE GLY ALA ASN SEQRES 24 A 380 PRO LEU ALA VAL ASP LEU LEU GLU LYS MET LEU VAL LEU SEQRES 25 A 380 ASP SER ASP LYS ARG ILE THR ALA ALA GLN ALA LEU ALA SEQRES 26 A 380 HIS ALA TYR PHE ALA GLN TYR HIS ASP PRO ASP ASP GLU SEQRES 27 A 380 PRO VAL ALA ASP PRO TYR ASP GLN SER PHE GLU SER ARG SEQRES 28 A 380 ASP LEU LEU ILE ASP GLU TRP LYS SER LEU THR TYR ASP SEQRES 29 A 380 GLU VAL ILE SER PHE VAL PRO PRO PRO LEU ASP GLN GLU SEQRES 30 A 380 GLU MET GLU HET LOK A 401 16 HET CL A 402 1 HET CL A 403 1 HET CL A 404 1 HET CL A 405 1 HET CL A 406 1 HET MG A 407 1 HET SO4 A 408 5 HET SO4 A 409 5 HET DMS A 410 4 HETNAM LOK METHYL ~{N}-[3-(METHOXYCARBONYLAMINO)PHENYL]CARBAMATE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE FORMUL 2 LOK C10 H12 N2 O4 FORMUL 3 CL 5(CL 1-) FORMUL 8 MG MG 2+ FORMUL 9 SO4 2(O4 S 2-) FORMUL 11 DMS C2 H6 O S FORMUL 12 HOH *259(H2 O) HELIX 1 AA1 SER A 61 MET A 78 1 18 HELIX 2 AA2 SER A 95 PHE A 99 5 5 HELIX 3 AA3 LEU A 113 LYS A 118 1 6 HELIX 4 AA4 THR A 123 ALA A 144 1 22 HELIX 5 AA5 LYS A 152 SER A 154 5 3 HELIX 6 AA6 ASP A 176 THR A 180 5 5 HELIX 7 AA7 VAL A 183 TYR A 188 1 6 HELIX 8 AA8 ALA A 190 LEU A 195 1 6 HELIX 9 AA9 GLN A 202 GLY A 219 1 18 HELIX 10 AB1 ASP A 227 GLY A 240 1 14 HELIX 11 AB2 GLY A 243 LYS A 248 1 6 HELIX 12 AB3 SER A 252 SER A 261 1 10 HELIX 13 AB4 ASN A 269 VAL A 273 5 5 HELIX 14 AB5 ASN A 278 LEU A 289 1 12 HELIX 15 AB6 ASP A 292 ARG A 296 5 5 HELIX 16 AB7 THR A 298 ALA A 304 1 7 HELIX 17 AB8 HIS A 305 ALA A 309 5 5 HELIX 18 AB9 GLN A 325 ARG A 330 5 6 HELIX 19 AC1 LEU A 333 SER A 347 1 15 SHEET 1 AA1 2 PHE A 8 GLU A 12 0 SHEET 2 AA1 2 ILE A 17 PRO A 21 -1 O TRP A 18 N GLN A 11 SHEET 1 AA2 5 TYR A 24 GLY A 31 0 SHEET 2 AA2 5 GLY A 36 ASP A 43 -1 O ALA A 40 N SER A 28 SHEET 3 AA2 5 ARG A 49 LEU A 55 -1 O VAL A 52 N CYS A 39 SHEET 4 AA2 5 TYR A 103 HIS A 107 -1 O THR A 106 N ALA A 51 SHEET 5 AA2 5 ASP A 88 PHE A 90 -1 N ASP A 88 O VAL A 105 SHEET 1 AA3 3 ALA A 111 ASP A 112 0 SHEET 2 AA3 3 LEU A 156 VAL A 158 -1 O VAL A 158 N ALA A 111 SHEET 3 AA3 3 LEU A 164 ILE A 166 -1 O LYS A 165 N ALA A 157 LINK OD1 ASN A 155 MG MG A 407 1555 1555 2.17 LINK OD2 ASP A 168 MG MG A 407 1555 1555 2.12 LINK MG MG A 407 O HOH A 529 1555 1555 2.08 LINK MG MG A 407 O HOH A 612 1555 1555 1.98 LINK MG MG A 407 O HOH A 642 1555 1555 2.09 LINK MG MG A 407 O HOH A 658 1555 1555 2.14 SITE 1 AC1 10 LEU A 217 THR A 218 VAL A 273 PHE A 274 SITE 2 AC1 10 ILE A 275 ALA A 277 PRO A 322 ASP A 324 SITE 3 AC1 10 CL A 404 HOH A 504 SITE 1 AC2 5 THR A 91 ALA A 93 GLU A 98 ASN A 100 SITE 2 AC2 5 ASP A 101 SITE 1 AC3 5 GLY A 85 HIS A 107 LYS A 165 HOH A 507 SITE 2 AC3 5 HOH A 629 SITE 1 AC4 5 ARG A 73 ARG A 220 ASP A 324 LOK A 401 SITE 2 AC4 5 HOH A 580 SITE 1 AC5 3 ASN A 114 SER A 154 HOH A 650 SITE 1 AC6 2 ALA A 263 GLN A 264 SITE 1 AC7 6 ASN A 155 ASP A 168 HOH A 529 HOH A 612 SITE 2 AC7 6 HOH A 642 HOH A 658 SITE 1 AC8 7 ARG A 220 THR A 221 HOH A 503 HOH A 505 SITE 2 AC8 7 HOH A 510 HOH A 669 HOH A 683 SITE 1 AC9 5 LYS A 152 HIS A 174 HOH A 529 HOH A 612 SITE 2 AC9 5 HOH A 658 SITE 1 AD1 5 LYS A 76 HIS A 77 LYS A 79 HOH A 528 SITE 2 AD1 5 HOH A 580 CRYST1 45.865 85.721 126.613 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021803 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007898 0.00000