HEADER TRANSFERASE 30-AUG-19 6SOV TITLE FRAGMENTS KCL_615 AND KCL_802 IN COMPLEX WITH MAP KINASE P38-ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAPK 14,CRK1,MITOGEN-ACTIVATED PROTEIN KINASE P38 ALPHA,MAP COMPND 5 KINASE P38 ALPHA; COMPND 6 EC: 2.7.11.24; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MAPK14, CRK1, CSBP1, CSBP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FBDD, FRAGMENT BASED DRUG DESIGN, P38, MAPK14, KINASE, TRANSFERASE., KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.E.NICHOLS,G.F.DE NICOLA REVDAT 3 24-JAN-24 6SOV 1 REMARK REVDAT 2 14-OCT-20 6SOV 1 JRNL LINK REVDAT 1 02-OCT-19 6SOV 0 JRNL AUTH C.NICHOLS,J.NG,A.KESHU,G.KELLY,M.R.CONTE,M.S.MARBER, JRNL AUTH 2 F.FRATERNALI,G.F.DE NICOLA JRNL TITL MINING THE PDB FOR TRACTABLE CASES WHERE X-RAY JRNL TITL 2 CRYSTALLOGRAPHY COMBINED WITH FRAGMENT SCREENS CAN BE USED JRNL TITL 3 TO SYSTEMATICALLY DESIGN PROTEIN-PROTEIN INHIBITORS: TWO JRNL TITL 4 TEST CASES ILLUSTRATED BY IL1 BETA-IL1R AND P38 ALPHA-TAB1 JRNL TITL 5 COMPLEXES. JRNL REF J.MED.CHEM. V. 63 7559 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32543856 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00403 REMARK 2 REMARK 2 RESOLUTION. 1.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 100873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.5400 - 4.0700 1.00 3517 158 0.1854 0.1832 REMARK 3 2 4.0700 - 3.2300 1.00 3376 152 0.1787 0.1641 REMARK 3 3 3.2300 - 2.8200 1.00 3337 163 0.2029 0.2271 REMARK 3 4 2.8200 - 2.5600 1.00 3293 176 0.2023 0.2257 REMARK 3 5 2.5600 - 2.3800 0.99 3283 152 0.2079 0.1969 REMARK 3 6 2.3800 - 2.2400 0.99 3259 189 0.1859 0.2398 REMARK 3 7 2.2400 - 2.1300 0.99 3251 171 0.1883 0.2095 REMARK 3 8 2.1300 - 2.0400 0.99 3247 171 0.1881 0.1867 REMARK 3 9 2.0400 - 1.9600 0.99 3262 174 0.2010 0.2147 REMARK 3 10 1.9600 - 1.8900 0.98 3188 177 0.2037 0.2211 REMARK 3 11 1.8900 - 1.8300 0.99 3260 151 0.2136 0.2332 REMARK 3 12 1.8300 - 1.7800 0.98 3181 171 0.2143 0.2356 REMARK 3 13 1.7800 - 1.7300 0.98 3203 158 0.2366 0.2447 REMARK 3 14 1.7300 - 1.6900 0.98 3228 143 0.2458 0.2323 REMARK 3 15 1.6900 - 1.6500 0.98 3152 199 0.2590 0.2558 REMARK 3 16 1.6500 - 1.6200 0.98 3184 180 0.2554 0.3265 REMARK 3 17 1.6200 - 1.5800 0.98 3196 167 0.2716 0.3161 REMARK 3 18 1.5800 - 1.5500 0.97 3130 187 0.2798 0.3154 REMARK 3 19 1.5500 - 1.5300 0.97 3157 161 0.2997 0.3475 REMARK 3 20 1.5300 - 1.5000 0.97 3172 173 0.2992 0.3559 REMARK 3 21 1.5000 - 1.4800 0.97 3187 149 0.3084 0.3438 REMARK 3 22 1.4800 - 1.4500 0.97 3110 184 0.3282 0.3572 REMARK 3 23 1.4500 - 1.4300 0.97 3123 184 0.3458 0.3639 REMARK 3 24 1.4300 - 1.4100 0.96 3115 184 0.3636 0.3900 REMARK 3 25 1.4100 - 1.3900 0.96 3061 183 0.3736 0.3798 REMARK 3 26 1.3900 - 1.3700 0.95 3117 132 0.3927 0.3631 REMARK 3 27 1.3700 - 1.3600 0.95 3122 177 0.4002 0.4263 REMARK 3 28 1.3600 - 1.3400 0.95 3018 169 0.4188 0.4054 REMARK 3 29 1.3400 - 1.3200 0.95 3051 156 0.4085 0.4544 REMARK 3 30 1.3200 - 1.3100 0.93 3050 152 0.4182 0.4153 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.532 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2945 REMARK 3 ANGLE : 0.830 4031 REMARK 3 CHIRALITY : 0.078 455 REMARK 3 PLANARITY : 0.005 524 REMARK 3 DIHEDRAL : 3.105 1708 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292104077. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103341 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.310 REMARK 200 RESOLUTION RANGE LOW (A) : 63.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.31 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6SO1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG400, 5% PEG550-MME, 0.1M REMARK 280 CALCIUM ACETATE, 0.1M MES PH6.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.44650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.34250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.84350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.44650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.34250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.84350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.44650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 51.34250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.84350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.44650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 51.34250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.84350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A 405 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 640 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 173 REMARK 465 HIS A 174 REMARK 465 THR A 175 REMARK 465 ASP A 176 REMARK 465 ASP A 177 REMARK 465 GLU A 178 REMARK 465 MET A 179 REMARK 465 THR A 180 REMARK 465 GLY A 181 REMARK 465 SER A 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 22 CD OE1 OE2 REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 94 CD NE CZ NH1 NH2 REMARK 470 ILE A 116 CD1 REMARK 470 VAL A 117 CG1 CG2 REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 ARG A 186 NE CZ NH1 NH2 REMARK 470 ASN A 196 OD1 ND2 REMARK 470 HIS A 199 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 220 CD NE CZ NH1 NH2 REMARK 470 ILE A 229 CD1 REMARK 470 LYS A 233 NZ REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 LYS A 249 CD CE NZ REMARK 470 GLN A 264 CD OE1 NE2 REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 ARG A 330 NE CZ NH1 NH2 REMARK 470 ILE A 334 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 120 -58.79 68.76 REMARK 500 ARG A 149 -16.80 78.70 REMARK 500 ASP A 150 46.26 -142.93 REMARK 500 PHE A 274 71.69 -102.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 81 OE1 REMARK 620 2 GLU A 81 OE2 43.5 REMARK 620 3 ASP A 316 OD1 78.6 121.7 REMARK 620 4 ASP A 316 OD2 94.0 126.6 46.4 REMARK 620 5 ASP A 354 OD1 107.9 87.7 109.5 144.0 REMARK 620 6 ASP A 354 OD2 113.0 88.1 115.7 145.1 7.8 REMARK 620 7 GLU A 356 O 118.1 102.3 100.2 129.6 14.7 16.8 REMARK 620 8 HOH A 542 O 132.9 105.0 113.2 128.0 25.3 20.0 19.4 REMARK 620 9 HOH A 565 O 114.9 86.2 121.8 147.1 14.0 6.4 22.0 19.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 313 OD2 REMARK 620 2 ASP A 354 O 104.2 REMARK 620 3 GLU A 359 OE2 86.1 64.8 REMARK 620 4 HOH A 541 O 87.2 17.1 65.2 REMARK 620 5 HOH A 567 O 88.9 76.3 138.0 72.9 REMARK 620 6 HOH A 569 O 85.3 133.1 70.4 135.4 150.5 REMARK 620 7 HOH A 670 O 102.3 140.7 145.8 147.1 75.8 77.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 315 OD1 REMARK 620 2 HOH A 508 O 104.4 REMARK 620 3 HOH A 583 O 79.8 62.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 640 O REMARK 620 2 HOH A 640 O 0.0 REMARK 620 3 HOH A 667 O 75.4 75.4 REMARK 620 4 HOH A 667 O 75.2 75.2 150.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SB4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LOT A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LOW A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 408 DBREF 6SOV A 1 360 UNP P47811 MK14_MOUSE 1 360 SEQADV 6SOV GLY A 0 UNP P47811 EXPRESSION TAG SEQADV 6SOV SER A 162 UNP P47811 CYS 162 CONFLICT SEQRES 1 A 361 GLY MET SER GLN GLU ARG PRO THR PHE TYR ARG GLN GLU SEQRES 2 A 361 LEU ASN LYS THR ILE TRP GLU VAL PRO GLU ARG TYR GLN SEQRES 3 A 361 ASN LEU SER PRO VAL GLY SER GLY ALA TYR GLY SER VAL SEQRES 4 A 361 CYS ALA ALA PHE ASP THR LYS THR GLY HIS ARG VAL ALA SEQRES 5 A 361 VAL LYS LYS LEU SER ARG PRO PHE GLN SER ILE ILE HIS SEQRES 6 A 361 ALA LYS ARG THR TYR ARG GLU LEU ARG LEU LEU LYS HIS SEQRES 7 A 361 MET LYS HIS GLU ASN VAL ILE GLY LEU LEU ASP VAL PHE SEQRES 8 A 361 THR PRO ALA ARG SER LEU GLU GLU PHE ASN ASP VAL TYR SEQRES 9 A 361 LEU VAL THR HIS LEU MET GLY ALA ASP LEU ASN ASN ILE SEQRES 10 A 361 VAL LYS CYS GLN LYS LEU THR ASP ASP HIS VAL GLN PHE SEQRES 11 A 361 LEU ILE TYR GLN ILE LEU ARG GLY LEU LYS TYR ILE HIS SEQRES 12 A 361 SER ALA ASP ILE ILE HIS ARG ASP LEU LYS PRO SER ASN SEQRES 13 A 361 LEU ALA VAL ASN GLU ASP SER GLU LEU LYS ILE LEU ASP SEQRES 14 A 361 PHE GLY LEU ALA ARG HIS THR ASP ASP GLU MET THR GLY SEQRES 15 A 361 TYR VAL ALA THR ARG TRP TYR ARG ALA PRO GLU ILE MET SEQRES 16 A 361 LEU ASN TRP MET HIS TYR ASN GLN THR VAL ASP ILE TRP SEQRES 17 A 361 SER VAL GLY CYS ILE MET ALA GLU LEU LEU THR GLY ARG SEQRES 18 A 361 THR LEU PHE PRO GLY THR ASP HIS ILE ASP GLN LEU LYS SEQRES 19 A 361 LEU ILE LEU ARG LEU VAL GLY THR PRO GLY ALA GLU LEU SEQRES 20 A 361 LEU LYS LYS ILE SER SER GLU SER ALA ARG ASN TYR ILE SEQRES 21 A 361 GLN SER LEU ALA GLN MET PRO LYS MET ASN PHE ALA ASN SEQRES 22 A 361 VAL PHE ILE GLY ALA ASN PRO LEU ALA VAL ASP LEU LEU SEQRES 23 A 361 GLU LYS MET LEU VAL LEU ASP SER ASP LYS ARG ILE THR SEQRES 24 A 361 ALA ALA GLN ALA LEU ALA HIS ALA TYR PHE ALA GLN TYR SEQRES 25 A 361 HIS ASP PRO ASP ASP GLU PRO VAL ALA ASP PRO TYR ASP SEQRES 26 A 361 GLN SER PHE GLU SER ARG ASP LEU LEU ILE ASP GLU TRP SEQRES 27 A 361 LYS SER LEU THR TYR ASP GLU VAL ILE SER PHE VAL PRO SEQRES 28 A 361 PRO PRO LEU ASP GLN GLU GLU MET GLU SER HET SB4 A 401 25 HET CA A 402 1 HET CA A 403 1 HET CA A 404 1 HET CA A 405 1 HET LOT A 406 17 HET LOW A 407 12 HET SO4 A 408 5 HETNAM SB4 4-(4-FLUOROPHENYL)-1-(4-PIPERIDINYL)-5-(2-AMINO-4- HETNAM 2 SB4 PYRIMIDINYL)-IMIDAZOLE HETNAM CA CALCIUM ION HETNAM LOT 6-[2,5-BIS(OXIDANYLIDENE)PYRROLIDIN-1-YL]PYRIDINE-3- HETNAM 2 LOT SULFONAMIDE HETNAM LOW (5~{S},7~{R})-3-AZANYLADAMANTAN-1-OL HETNAM SO4 SULFATE ION HETSYN SB4 SB220025 FORMUL 2 SB4 C18 H19 F N6 FORMUL 3 CA 4(CA 2+) FORMUL 7 LOT C9 H9 N3 O4 S FORMUL 8 LOW C10 H17 N O FORMUL 9 SO4 O4 S 2- FORMUL 10 HOH *186(H2 O) HELIX 1 AA1 SER A 61 MET A 78 1 18 HELIX 2 AA2 SER A 95 PHE A 99 5 5 HELIX 3 AA3 LEU A 113 LYS A 118 1 6 HELIX 4 AA4 THR A 123 ALA A 144 1 22 HELIX 5 AA5 LYS A 152 SER A 154 5 3 HELIX 6 AA6 ALA A 190 LEU A 195 1 6 HELIX 7 AA7 THR A 203 GLY A 219 1 17 HELIX 8 AA8 ASP A 227 GLY A 240 1 14 HELIX 9 AA9 GLY A 243 LYS A 248 1 6 HELIX 10 AB1 SER A 252 LEU A 262 1 11 HELIX 11 AB2 ASN A 269 VAL A 273 5 5 HELIX 12 AB3 ASN A 278 LEU A 289 1 12 HELIX 13 AB4 THR A 298 ALA A 304 1 7 HELIX 14 AB5 HIS A 305 ALA A 309 5 5 HELIX 15 AB6 ASP A 313 GLU A 317 5 5 HELIX 16 AB7 GLN A 325 ARG A 330 5 6 HELIX 17 AB8 LEU A 333 PHE A 348 1 16 SHEET 1 AA1 2 PHE A 8 LEU A 13 0 SHEET 2 AA1 2 THR A 16 PRO A 21 -1 O THR A 16 N LEU A 13 SHEET 1 AA2 5 TYR A 24 GLY A 33 0 SHEET 2 AA2 5 GLY A 36 ASP A 43 -1 O GLY A 36 N GLY A 33 SHEET 3 AA2 5 ARG A 49 LEU A 55 -1 O VAL A 52 N CYS A 39 SHEET 4 AA2 5 TYR A 103 HIS A 107 -1 O LEU A 104 N LYS A 53 SHEET 5 AA2 5 ASP A 88 PHE A 90 -1 N ASP A 88 O VAL A 105 SHEET 1 AA3 3 ALA A 111 ASP A 112 0 SHEET 2 AA3 3 LEU A 156 VAL A 158 -1 O VAL A 158 N ALA A 111 SHEET 3 AA3 3 LEU A 164 ILE A 166 -1 O LYS A 165 N ALA A 157 LINK OE1 GLU A 81 CA CA A 402 1555 2555 2.44 LINK OE2 GLU A 81 CA CA A 402 1555 2555 3.18 LINK OD2 ASP A 313 CA CA A 403 1555 1555 2.36 LINK OD1 ASP A 315 CA CA A 404 1555 1555 2.67 LINK OD1 ASP A 316 CA CA A 402 1555 2555 3.00 LINK OD2 ASP A 316 CA CA A 402 1555 2555 2.39 LINK OD1 ASP A 354 CA CA A 402 1555 1555 2.45 LINK OD2 ASP A 354 CA CA A 402 1555 1555 2.56 LINK O ASP A 354 CA CA A 403 1555 2555 2.43 LINK O GLU A 356 CA CA A 402 1555 1555 2.35 LINK OE2 GLU A 359 CA CA A 403 1555 1555 2.46 LINK CA CA A 402 O HOH A 542 1555 2555 2.44 LINK CA CA A 402 O HOH A 565 1555 2555 2.38 LINK CA CA A 403 O HOH A 541 1555 1555 2.46 LINK CA CA A 403 O HOH A 567 1555 1555 2.42 LINK CA CA A 403 O HOH A 569 1555 1555 2.40 LINK CA CA A 403 O HOH A 670 1555 2555 2.44 LINK CA CA A 404 O HOH A 508 1555 1555 2.46 LINK CA CA A 404 O HOH A 583 1555 1555 2.42 LINK CA CA A 405 O HOH A 640 1555 1555 2.61 LINK CA CA A 405 O HOH A 640 1555 2555 2.61 LINK CA CA A 405 O HOH A 667 1555 1555 2.49 LINK CA CA A 405 O HOH A 667 1555 2555 2.50 SITE 1 AC1 17 VAL A 30 SER A 32 GLY A 33 VAL A 38 SITE 2 AC1 17 ALA A 51 LEU A 86 LEU A 104 VAL A 105 SITE 3 AC1 17 THR A 106 HIS A 107 LEU A 108 MET A 109 SITE 4 AC1 17 LEU A 167 HOH A 517 HOH A 527 HOH A 548 SITE 5 AC1 17 HOH A 579 SITE 1 AC2 6 GLU A 81 ASP A 316 ASP A 354 GLU A 356 SITE 2 AC2 6 HOH A 542 HOH A 565 SITE 1 AC3 7 ASP A 313 ASP A 354 GLU A 359 HOH A 541 SITE 2 AC3 7 HOH A 567 HOH A 569 HOH A 670 SITE 1 AC4 3 ASP A 315 HOH A 508 HOH A 583 SITE 1 AC5 2 HOH A 640 HOH A 667 SITE 1 AC6 6 LEU A 217 THR A 218 VAL A 273 PHE A 274 SITE 2 AC6 6 ILE A 275 SO4 A 408 SITE 1 AC7 5 LEU A 222 LEU A 234 ARG A 237 SO4 A 408 SITE 2 AC7 5 HOH A 597 SITE 1 AC8 7 THR A 218 ARG A 220 THR A 221 VAL A 273 SITE 2 AC8 7 LOT A 406 LOW A 407 HOH A 578 CRYST1 80.893 102.685 103.687 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012362 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009739 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009644 0.00000