HEADER TRANSFERASE 02-SEP-19 6SPU TITLE CRYSTAL STRUCTURE OF CAMP-DEPENDENT PROTEIN KINASE A (CHO PKA) IN TITLE 2 COMPLEX WITH 3-AMINOBENZOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHOTRANSFERASE, SIGNALLING PATHWAYS, GLYCOGEN METABOLISM, KEYWDS 2 SERINE/THREONINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.OEBBEKE,C.SIEFKER,A.HEINE,G.KLEBE REVDAT 4 24-JAN-24 6SPU 1 REMARK REVDAT 3 30-DEC-20 6SPU 1 JRNL REVDAT 2 09-DEC-20 6SPU 1 JRNL REVDAT 1 30-SEP-20 6SPU 0 JRNL AUTH M.OEBBEKE,C.SIEFKER,B.WAGNER,A.HEINE,G.KLEBE JRNL TITL FRAGMENT BINDING TO KINASE HINGE: IF CHARGE DISTRIBUTION AND JRNL TITL 2 LOCAL PK A SHIFTS MISLEAD POPULAR BIOISOSTERISM CONCEPTS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 60 252 2021 JRNL REFN ESSN 1521-3773 JRNL PMID 33021032 JRNL DOI 10.1002/ANIE.202011295 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 72994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5500 - 4.1200 0.96 2794 148 0.1826 0.1985 REMARK 3 2 4.1200 - 3.2700 0.98 2697 142 0.1526 0.1456 REMARK 3 3 3.2700 - 2.8500 0.99 2705 142 0.1590 0.1956 REMARK 3 4 2.8500 - 2.5900 0.99 2698 142 0.1651 0.2016 REMARK 3 5 2.5900 - 2.4100 0.99 2689 141 0.1522 0.1630 REMARK 3 6 2.4100 - 2.2700 0.99 2664 141 0.1479 0.1454 REMARK 3 7 2.2700 - 2.1500 0.99 2650 139 0.1458 0.1664 REMARK 3 8 2.1500 - 2.0600 0.99 2656 140 0.1482 0.1848 REMARK 3 9 2.0600 - 1.9800 1.00 2696 142 0.1517 0.1687 REMARK 3 10 1.9800 - 1.9100 1.00 2676 141 0.1579 0.2002 REMARK 3 11 1.9100 - 1.8500 1.00 2674 140 0.1558 0.1819 REMARK 3 12 1.8500 - 1.8000 1.00 2663 141 0.1523 0.1644 REMARK 3 13 1.8000 - 1.7500 1.00 2658 140 0.1601 0.1948 REMARK 3 14 1.7500 - 1.7100 1.00 2652 138 0.1568 0.1672 REMARK 3 15 1.7100 - 1.6700 1.00 2650 140 0.1643 0.2051 REMARK 3 16 1.6700 - 1.6300 1.00 2671 140 0.1667 0.2428 REMARK 3 17 1.6300 - 1.6000 1.00 2635 139 0.1698 0.2060 REMARK 3 18 1.6000 - 1.5700 1.00 2669 140 0.1749 0.2067 REMARK 3 19 1.5700 - 1.5400 1.00 2653 140 0.1757 0.2139 REMARK 3 20 1.5400 - 1.5200 1.00 2648 139 0.1760 0.2024 REMARK 3 21 1.5200 - 1.4900 1.00 2635 139 0.1864 0.2300 REMARK 3 22 1.4900 - 1.4700 1.00 2645 139 0.1931 0.2127 REMARK 3 23 1.4700 - 1.4500 1.00 2659 140 0.2065 0.2221 REMARK 3 24 1.4500 - 1.4300 1.00 2652 140 0.2122 0.2412 REMARK 3 25 1.4300 - 1.4100 1.00 2624 138 0.2173 0.2572 REMARK 3 26 1.4100 - 1.3900 0.99 2631 139 0.2241 0.2042 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2940 REMARK 3 ANGLE : 1.032 3999 REMARK 3 CHIRALITY : 0.111 421 REMARK 3 PLANARITY : 0.007 524 REMARK 3 DIHEDRAL : 23.266 1077 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9862 26.0624 30.6566 REMARK 3 T TENSOR REMARK 3 T11: 0.1662 T22: 0.1095 REMARK 3 T33: 0.1461 T12: -0.0396 REMARK 3 T13: 0.0163 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.3569 L22: 2.1226 REMARK 3 L33: 6.5448 L12: 0.2593 REMARK 3 L13: 1.1898 L23: 1.9046 REMARK 3 S TENSOR REMARK 3 S11: 0.0972 S12: -0.1812 S13: 0.1432 REMARK 3 S21: 0.2060 S22: -0.0671 S23: -0.0285 REMARK 3 S31: -0.1928 S32: -0.0005 S33: -0.0245 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3607 10.1113 12.3185 REMARK 3 T TENSOR REMARK 3 T11: 0.1292 T22: 0.1241 REMARK 3 T33: 0.1220 T12: 0.0042 REMARK 3 T13: 0.0019 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.5925 L22: 2.0040 REMARK 3 L33: 1.4622 L12: -0.8189 REMARK 3 L13: -0.5238 L23: 0.9037 REMARK 3 S TENSOR REMARK 3 S11: 0.0795 S12: 0.0802 S13: -0.0246 REMARK 3 S21: -0.2006 S22: -0.1040 S23: 0.0937 REMARK 3 S31: -0.1308 S32: -0.0853 S33: 0.0156 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8374 -0.3637 26.1753 REMARK 3 T TENSOR REMARK 3 T11: 0.1205 T22: 0.0914 REMARK 3 T33: 0.1337 T12: 0.0226 REMARK 3 T13: -0.0012 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 1.0325 L22: 0.8723 REMARK 3 L33: 5.7251 L12: 0.7249 REMARK 3 L13: -2.4293 L23: -1.7873 REMARK 3 S TENSOR REMARK 3 S11: -0.1206 S12: 0.0122 S13: -0.1195 REMARK 3 S21: -0.0795 S22: -0.0318 S23: -0.0283 REMARK 3 S31: 0.1607 S32: -0.1017 S33: 0.1533 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0685 12.5805 29.4068 REMARK 3 T TENSOR REMARK 3 T11: 0.0748 T22: 0.0708 REMARK 3 T33: 0.0850 T12: 0.0081 REMARK 3 T13: 0.0080 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.8782 L22: 1.1247 REMARK 3 L33: 1.7025 L12: -0.0758 REMARK 3 L13: 0.0034 L23: -0.5196 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: 0.0339 S13: 0.0260 REMARK 3 S21: -0.0266 S22: -0.0132 S23: 0.0267 REMARK 3 S31: -0.0866 S32: -0.0095 S33: -0.0052 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1200 10.9431 37.2577 REMARK 3 T TENSOR REMARK 3 T11: 0.0882 T22: 0.1070 REMARK 3 T33: 0.1131 T12: 0.0177 REMARK 3 T13: 0.0137 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.0358 L22: 1.7118 REMARK 3 L33: 1.7525 L12: -0.5867 REMARK 3 L13: 0.4151 L23: -0.7432 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: -0.0118 S13: 0.0154 REMARK 3 S21: -0.0154 S22: 0.0310 S23: 0.1712 REMARK 3 S31: -0.0542 S32: -0.1606 S33: -0.0599 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2998 4.8387 20.5742 REMARK 3 T TENSOR REMARK 3 T11: 0.1142 T22: 0.1294 REMARK 3 T33: 0.1477 T12: -0.0046 REMARK 3 T13: -0.0099 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.4143 L22: 0.8168 REMARK 3 L33: 0.7841 L12: -0.2121 REMARK 3 L13: -0.5291 L23: 0.5530 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: 0.0435 S13: -0.0149 REMARK 3 S21: -0.1152 S22: -0.0700 S23: 0.0067 REMARK 3 S31: -0.0309 S32: -0.0556 S33: 0.0816 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SPU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73003 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 45.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48100 REMARK 200 FOR SHELL : 2.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6F14 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES-BIS-TRIS-BUFFER, 1 MM REMARK 280 DITHIOTHREITOL, 0.1 MM SODIUM EDTA, 75 MM LICL, 0.03 MEGA 8 AND REMARK 280 23 % METHANOL (V/V)0.003 ML DROP VOLUME, 0.5 ML RESERVOIR VOLUME, REMARK 280 PH 6.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.73850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.86550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.81950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.86550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.73850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.81950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 GLN A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 78 CE NZ REMARK 470 LYS A 81 CG CD CE NZ REMARK 470 LYS A 83 CD CE NZ REMARK 470 LYS A 105 CD CE NZ REMARK 470 GLN A 176 CD OE1 NE2 REMARK 470 GLN A 177 CG CD OE1 NE2 REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 ILE A 244 CG1 CD1 REMARK 470 GLN A 245 CG CD OE1 NE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 285 CD CE NZ REMARK 470 LYS A 295 CG CD CE NZ REMARK 470 GLU A 311 CD OE1 OE2 REMARK 470 LYS A 317 CD CE NZ REMARK 470 LYS A 319 CE NZ REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 339 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 95 CB - CG - CD1 ANGL. DEV. = 18.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 166 34.36 -141.88 REMARK 500 ASP A 184 84.77 70.46 REMARK 500 LEU A 273 43.52 -89.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAB A 405 DBREF 6SPU A 0 350 UNP P25321 KAPCA_CRIGR 1 351 SEQADV 6SPU GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 6SPU HIS A -1 UNP P25321 EXPRESSION TAG SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SER SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE MODRES 6SPU SEP A 139 SER MODIFIED RESIDUE MODRES 6SPU TPO A 197 THR MODIFIED RESIDUE MODRES 6SPU SEP A 338 SER MODIFIED RESIDUE HET SEP A 139 14 HET TPO A 197 17 HET SEP A 338 14 HET DMS A 401 4 HET DMS A 402 4 HET DMS A 403 4 HET DMS A 404 4 HET GAB A 405 10 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM DMS DIMETHYL SULFOXIDE HETNAM GAB 3-AMINOBENZOIC ACID HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE HETSYN GAB GABACULINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 DMS 4(C2 H6 O S) FORMUL 6 GAB C7 H7 N O2 FORMUL 7 HOH *277(H2 O) HELIX 1 AA1 GLU A 13 SER A 32 1 20 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 VAL A 98 1 15 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SEP A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 SER A 252 1 11 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 ASP A 276 ARG A 280 5 5 HELIX 14 AB5 VAL A 288 ASN A 293 1 6 HELIX 15 AB6 HIS A 294 ALA A 298 5 5 HELIX 16 AB7 ASP A 301 GLN A 307 1 7 SHEET 1 AA1 5 PHE A 43 THR A 51 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O VAL A 57 N LEU A 49 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N PHE A 108 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C PHE A 138 N SEP A 139 1555 1555 1.33 LINK C SEP A 139 N GLU A 140 1555 1555 1.32 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.32 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 SITE 1 AC1 3 PHE A 18 HOH A 502 HOH A 545 SITE 1 AC2 4 LEU A 89 ASN A 90 ARG A 93 GLU A 349 SITE 1 AC3 1 ALA A 233 SITE 1 AC4 3 LEU A 198 GLY A 200 HOH A 654 SITE 1 AC5 7 ALA A 70 GLU A 121 TYR A 122 VAL A 123 SITE 2 AC5 7 LEU A 173 THR A 183 HOH A 647 CRYST1 51.477 71.639 97.731 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019426 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010232 0.00000