HEADER TRANSFERASE 08-AUG-17 6SPW TITLE STRUCTURE OF PROTEIN KINASE CK2 CATALYTIC SUBUNIT WITH THE CK2BETA- TITLE 2 COMPETITIVE BISUBSTRATE INHIBITOR ARC3140 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CASEIN KINASE II SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CK II ALPHA; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ARC3140; COMPND 9 CHAIN: B, C, D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CSNK2A1, CK2A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS PROTEIN KINASE CK2 CASEIN KINASE 2 BISUBSTRATE INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.NIEFIND,A.SCHNITZLER REVDAT 3 24-JAN-24 6SPW 1 LINK REVDAT 2 26-FEB-20 6SPW 1 JRNL REVDAT 1 29-JAN-20 6SPW 0 JRNL AUTH M.PIETSCH,K.VIHT,A.SCHNITZLER,R.EKAMBARAM,M.STEINKRUGER, JRNL AUTH 2 E.ENKVIST,C.NIENBERG,A.NICKELSEN,M.LAUWERS,J.JOSE,A.URI, JRNL AUTH 3 K.NIEFIND JRNL TITL UNEXPECTED CK2 BETA-ANTAGONISTIC FUNCTIONALITY OF JRNL TITL 2 BISUBSTRATE INHIBITORS TARGETING PROTEIN KINASE CK2. JRNL REF BIOORG.CHEM. V. 96 03608 2020 JRNL REFN ISSN 0045-2068 JRNL PMID 32058103 JRNL DOI 10.1016/J.BIOORG.2020.103608 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.ENKVIST,K.VIHT,N.BISCHOFF,J.VAHTER,S.SAAVER,G.RAIDARU, REMARK 1 AUTH 2 O.G.ISSINGER,K.NIEFIND,A.URI REMARK 1 TITL A SUBNANOMOLAR FLUORESCENT PROBE FOR PROTEIN KINASE CK2 REMARK 1 TITL 2 INTERACTION STUDIES. REMARK 1 REF ORG. BIOMOL. CHEM. V. 10 8645 2012 REMARK 1 REFN ESSN 1477-0539 REMARK 1 PMID 23032938 REMARK 1 DOI 10.1039/C2OB26022K REMARK 1 REFERENCE 2 REMARK 1 AUTH I.ERMAKOVA,B.BOLDYREFF,O.G.ISSINGER,K.NIEFIND REMARK 1 TITL CRYSTAL STRUCTURE OF A C-TERMINAL DELETION MUTANT OF HUMAN REMARK 1 TITL 2 PROTEIN KINASE CK2 CATALYTIC SUBUNIT. REMARK 1 REF J. MOL. BIOL. V. 330 925 2003 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 12860116 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 49163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5860 - 3.8536 1.00 3598 154 0.1645 0.1708 REMARK 3 2 3.8536 - 3.0590 1.00 3432 140 0.1439 0.1740 REMARK 3 3 3.0590 - 2.6724 1.00 3411 136 0.1509 0.1845 REMARK 3 4 2.6724 - 2.4281 1.00 3392 141 0.1576 0.1841 REMARK 3 5 2.4281 - 2.2540 1.00 3356 145 0.1556 0.2096 REMARK 3 6 2.2540 - 2.1212 1.00 3360 145 0.1522 0.1876 REMARK 3 7 2.1212 - 2.0149 1.00 3359 139 0.1499 0.1705 REMARK 3 8 2.0149 - 1.9272 1.00 3335 131 0.1665 0.2113 REMARK 3 9 1.9272 - 1.8530 1.00 3358 135 0.1743 0.2128 REMARK 3 10 1.8530 - 1.7891 1.00 3344 147 0.1832 0.2344 REMARK 3 11 1.7891 - 1.7331 1.00 3344 132 0.2012 0.2858 REMARK 3 12 1.7331 - 1.6836 1.00 3301 147 0.2115 0.2586 REMARK 3 13 1.6836 - 1.6393 1.00 3325 134 0.2363 0.2919 REMARK 3 14 1.6393 - 1.5993 0.98 3288 134 0.2592 0.3155 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.300 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 3108 REMARK 3 ANGLE : 1.377 4199 REMARK 3 CHIRALITY : 0.098 423 REMARK 3 PLANARITY : 0.011 542 REMARK 3 DIHEDRAL : 12.145 1851 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0254 62.2496 57.4641 REMARK 3 T TENSOR REMARK 3 T11: 0.1165 T22: 0.1334 REMARK 3 T33: 0.1142 T12: 0.0191 REMARK 3 T13: -0.0102 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.0415 L22: 0.6192 REMARK 3 L33: 0.4148 L12: -0.5382 REMARK 3 L13: -0.4626 L23: 0.1543 REMARK 3 S TENSOR REMARK 3 S11: -0.1181 S12: -0.2579 S13: 0.0052 REMARK 3 S21: 0.1249 S22: 0.1075 S23: -0.0487 REMARK 3 S31: 0.0008 S32: 0.1030 S33: -0.0511 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2877 54.2225 54.1053 REMARK 3 T TENSOR REMARK 3 T11: 0.1254 T22: 0.2263 REMARK 3 T33: 0.2582 T12: -0.0213 REMARK 3 T13: 0.0418 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 0.4917 L22: 0.6738 REMARK 3 L33: 0.9194 L12: -0.1831 REMARK 3 L13: 0.3441 L23: 0.1299 REMARK 3 S TENSOR REMARK 3 S11: 0.0153 S12: -0.1965 S13: -0.2936 REMARK 3 S21: 0.1245 S22: -0.0941 S23: 0.2987 REMARK 3 S31: 0.1440 S32: -0.3894 S33: 0.0587 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8082 39.7872 47.5935 REMARK 3 T TENSOR REMARK 3 T11: 0.0913 T22: 0.0792 REMARK 3 T33: 0.0914 T12: -0.0078 REMARK 3 T13: 0.0332 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 1.2101 L22: 1.1839 REMARK 3 L33: 0.5376 L12: 0.1928 REMARK 3 L13: 0.1180 L23: -0.0056 REMARK 3 S TENSOR REMARK 3 S11: -0.0380 S12: -0.0442 S13: -0.0474 REMARK 3 S21: -0.0037 S22: -0.0151 S23: 0.0848 REMARK 3 S31: 0.0700 S32: -0.0429 S33: -0.0157 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7467 46.9049 62.1911 REMARK 3 T TENSOR REMARK 3 T11: 1.0828 T22: 0.7356 REMARK 3 T33: 0.7970 T12: -0.0700 REMARK 3 T13: -0.1145 T23: -0.3024 REMARK 3 L TENSOR REMARK 3 L11: 0.0219 L22: 0.0027 REMARK 3 L33: 0.0058 L12: 0.0042 REMARK 3 L13: -0.0104 L23: -0.0006 REMARK 3 S TENSOR REMARK 3 S11: -0.0305 S12: -0.0142 S13: 0.0594 REMARK 3 S21: 0.0185 S22: -0.0401 S23: 0.0232 REMARK 3 S31: -0.0086 S32: 0.0325 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 3 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8821 49.2532 75.0337 REMARK 3 T TENSOR REMARK 3 T11: 1.2458 T22: 1.2557 REMARK 3 T33: 1.4232 T12: -0.0286 REMARK 3 T13: 0.0790 T23: -0.2046 REMARK 3 L TENSOR REMARK 3 L11: 0.0177 L22: 0.0382 REMARK 3 L33: 0.0109 L12: 0.0205 REMARK 3 L13: 0.0091 L23: 0.0201 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: -0.0135 S13: 0.0076 REMARK 3 S21: -0.0028 S22: 0.0101 S23: 0.0611 REMARK 3 S31: -0.0014 S32: 0.0537 S33: 0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 3 THROUGH 8 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1632 26.4167 63.9207 REMARK 3 T TENSOR REMARK 3 T11: 1.4076 T22: 1.4743 REMARK 3 T33: 1.3363 T12: 0.1046 REMARK 3 T13: 0.2847 T23: -0.0657 REMARK 3 L TENSOR REMARK 3 L11: 0.0245 L22: 0.0098 REMARK 3 L33: 0.0683 L12: 0.0067 REMARK 3 L13: -0.0403 L23: -0.0149 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: 0.0217 S13: -0.0281 REMARK 3 S21: 0.0308 S22: -0.0021 S23: -0.0074 REMARK 3 S31: -0.0082 S32: -0.0082 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104118. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12713 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49166 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.599 REMARK 200 RESOLUTION RANGE LOW (A) : 42.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.10040 REMARK 200 R SYM (I) : 0.10040 REMARK 200 FOR THE DATA SET : 11.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.79380 REMARK 200 R SYM FOR SHELL (I) : 0.79380 REMARK 200 FOR SHELL : 1.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2PVR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MIKROLITER OF THE CK2ALPHA/ARC3140 REMARK 280 MIXTURE (COMPOSITION: 7 MG/ML CK2ALPHA ENZYME, 1 MILLIMOLAR REMARK 280 ARC3140, 10 % DIMETHYL SULFOXIDE, 450 MM NACL, 22.5 MM TRIS/HCL, REMARK 280 PH 8.5) WAS MIXED WITH 2.5 MIKROLITER RESERVOIR SOLUTION REMARK 280 (COMPOSITION: 30 % PEG4000, 0.2 M AMMONIUM ACETATE, 0.1 M SODIUM REMARK 280 CITRATE, PH 5.6) FOLLOWED BY VAPOUR DIFFUSION EQUILIBRATION REMARK 280 AGAINST MICROLITER OF THE RESERVOIR SOLUTION., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.75150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.21600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.58550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.21600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.75150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.58550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 330 REMARK 465 GLN A 331 REMARK 465 ALA A 332 REMARK 465 ARG A 333 REMARK 465 MET A 334 REMARK 465 GLY A 335 REMARK 465 SER A 336 REMARK 465 SER A 337 REMARK 465 SER A 338 REMARK 465 MET A 339 REMARK 465 PRO A 340 REMARK 465 GLY A 341 REMARK 465 GLY A 342 REMARK 465 SER A 343 REMARK 465 THR A 344 REMARK 465 PRO A 345 REMARK 465 VAL A 346 REMARK 465 SER A 347 REMARK 465 SER A 348 REMARK 465 ALA A 349 REMARK 465 ASN A 350 REMARK 465 MET A 351 REMARK 465 MET A 352 REMARK 465 SER A 353 REMARK 465 GLY A 354 REMARK 465 ILE A 355 REMARK 465 SER A 356 REMARK 465 SER A 357 REMARK 465 VAL A 358 REMARK 465 PRO A 359 REMARK 465 THR A 360 REMARK 465 PRO A 361 REMARK 465 SER A 362 REMARK 465 PRO A 363 REMARK 465 LEU A 364 REMARK 465 GLY A 365 REMARK 465 PRO A 366 REMARK 465 LEU A 367 REMARK 465 ALA A 368 REMARK 465 GLY A 369 REMARK 465 SER A 370 REMARK 465 PRO A 371 REMARK 465 VAL A 372 REMARK 465 ILE A 373 REMARK 465 ALA A 374 REMARK 465 ALA A 375 REMARK 465 ALA A 376 REMARK 465 ASN A 377 REMARK 465 PRO A 378 REMARK 465 LEU A 379 REMARK 465 GLY A 380 REMARK 465 MET A 381 REMARK 465 PRO A 382 REMARK 465 VAL A 383 REMARK 465 PRO A 384 REMARK 465 ALA A 385 REMARK 465 ALA A 386 REMARK 465 ALA A 387 REMARK 465 GLY A 388 REMARK 465 ALA A 389 REMARK 465 GLN A 390 REMARK 465 GLN A 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 538 O HOH A 612 2.02 REMARK 500 O HOH A 733 O HOH A 739 2.03 REMARK 500 O HOH A 731 O HOH A 743 2.05 REMARK 500 N DAS C 2 OAI A0Z C 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 21 OE1 GLU A 167 1655 2.05 REMARK 500 O HOH A 564 O HOH A 686 4566 2.13 REMARK 500 O HOH A 502 O HOH A 722 4566 2.15 REMARK 500 O HOH A 744 O HOH A 751 4566 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 18 31.87 -97.68 REMARK 500 ASN A 61 12.09 -143.90 REMARK 500 PRO A 72 105.32 -57.41 REMARK 500 ASP A 156 42.32 -148.32 REMARK 500 ASP A 175 70.59 59.76 REMARK 500 ALA A 193 167.12 56.49 REMARK 500 MET A 208 53.78 -90.86 REMARK 500 MET A 208 54.30 -90.98 REMARK 500 HIS A 234 73.31 -106.66 REMARK 500 ASP B 5 -54.17 -131.17 REMARK 500 ASP C 3 -66.80 -128.25 REMARK 500 ASP C 7 113.32 -164.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 33 O REMARK 620 2 THR A 326 O 58.7 REMARK 620 3 HOH A 654 O 56.8 3.0 REMARK 620 4 HOH A 662 O 61.2 3.7 4.5 REMARK 620 5 HOH A 674 O 57.1 4.5 1.9 4.3 REMARK 620 6 HOH A 709 O 61.6 4.6 5.0 1.0 4.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue A0Z B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DAS C 2 and ASP C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide A0Z C 101 and DAS C REMARK 800 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide DAS D 2 and ASP D 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide A0Z D 101 and DAS D REMARK 800 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5NUY RELATED DB: PDB REMARK 900 THE SAME ENZYME WITH A SIMILAR BISUBSTRATE INHIBITOR. DBREF 6SPW A 1 391 UNP P68400 CSK21_HUMAN 1 391 DBREF 6SPW B 2 8 PDB 6SPW 6SPW 2 8 DBREF 6SPW C 2 8 PDB 6SPW 6SPW 2 8 DBREF 6SPW D 2 8 PDB 6SPW 6SPW 2 8 SEQRES 1 A 391 MET SER GLY PRO VAL PRO SER ARG ALA ARG VAL TYR THR SEQRES 2 A 391 ASP VAL ASN THR HIS ARG PRO ARG GLU TYR TRP ASP TYR SEQRES 3 A 391 GLU SER HIS VAL VAL GLU TRP GLY ASN GLN ASP ASP TYR SEQRES 4 A 391 GLN LEU VAL ARG LYS LEU GLY ARG GLY LYS TYR SER GLU SEQRES 5 A 391 VAL PHE GLU ALA ILE ASN ILE THR ASN ASN GLU LYS VAL SEQRES 6 A 391 VAL VAL LYS ILE LEU LYS PRO VAL LYS LYS LYS LYS ILE SEQRES 7 A 391 LYS ARG GLU ILE LYS ILE LEU GLU ASN LEU ARG GLY GLY SEQRES 8 A 391 PRO ASN ILE ILE THR LEU ALA ASP ILE VAL LYS ASP PRO SEQRES 9 A 391 VAL SER ARG THR PRO ALA LEU VAL PHE GLU HIS VAL ASN SEQRES 10 A 391 ASN THR ASP PHE LYS GLN LEU TYR GLN THR LEU THR ASP SEQRES 11 A 391 TYR ASP ILE ARG PHE TYR MET TYR GLU ILE LEU LYS ALA SEQRES 12 A 391 LEU ASP TYR CYS HIS SER MET GLY ILE MET HIS ARG ASP SEQRES 13 A 391 VAL LYS PRO HIS ASN VAL MET ILE ASP HIS GLU HIS ARG SEQRES 14 A 391 LYS LEU ARG LEU ILE ASP TRP GLY LEU ALA GLU PHE TYR SEQRES 15 A 391 HIS PRO GLY GLN GLU TYR ASN VAL ARG VAL ALA SER ARG SEQRES 16 A 391 TYR PHE LYS GLY PRO GLU LEU LEU VAL ASP TYR GLN MET SEQRES 17 A 391 TYR ASP TYR SER LEU ASP MET TRP SER LEU GLY CYS MET SEQRES 18 A 391 LEU ALA SER MET ILE PHE ARG LYS GLU PRO PHE PHE HIS SEQRES 19 A 391 GLY HIS ASP ASN TYR ASP GLN LEU VAL ARG ILE ALA LYS SEQRES 20 A 391 VAL LEU GLY THR GLU ASP LEU TYR ASP TYR ILE ASP LYS SEQRES 21 A 391 TYR ASN ILE GLU LEU ASP PRO ARG PHE ASN ASP ILE LEU SEQRES 22 A 391 GLY ARG HIS SER ARG LYS ARG TRP GLU ARG PHE VAL HIS SEQRES 23 A 391 SER GLU ASN GLN HIS LEU VAL SER PRO GLU ALA LEU ASP SEQRES 24 A 391 PHE LEU ASP LYS LEU LEU ARG TYR ASP HIS GLN SER ARG SEQRES 25 A 391 LEU THR ALA ARG GLU ALA MET GLU HIS PRO TYR PHE TYR SEQRES 26 A 391 THR VAL VAL LYS ASP GLN ALA ARG MET GLY SER SER SER SEQRES 27 A 391 MET PRO GLY GLY SER THR PRO VAL SER SER ALA ASN MET SEQRES 28 A 391 MET SER GLY ILE SER SER VAL PRO THR PRO SER PRO LEU SEQRES 29 A 391 GLY PRO LEU ALA GLY SER PRO VAL ILE ALA ALA ALA ASN SEQRES 30 A 391 PRO LEU GLY MET PRO VAL PRO ALA ALA ALA GLY ALA GLN SEQRES 31 A 391 GLN SEQRES 1 B 7 DAS ASP ASP ASP ASP ASP LYS SEQRES 1 C 7 DAS ASP ASP ASP ASP ASP LYS SEQRES 1 D 7 DAS ASP ASP ASP ASP ASP LYS HET DAS B 2 8 HET DAS C 2 8 HET DAS D 2 8 HET NA A 401 1 HET A0Z B 101 22 HET A0Z C 101 22 HET A0Z D 101 22 HETNAM DAS D-ASPARTIC ACID HETNAM NA SODIUM ION HETNAM A0Z 8-[4,5,6,7-TETRAKIS(IODANYL)BENZIMIDAZOL-1-YL]OCTANOIC HETNAM 2 A0Z ACID FORMUL 2 DAS 3(C4 H7 N O4) FORMUL 5 NA NA 1+ FORMUL 6 A0Z 3(C15 H16 I4 N2 O2) FORMUL 9 HOH *293(H2 O) HELIX 1 AA1 VAL A 15 ARG A 19 5 5 HELIX 2 AA2 PRO A 20 ASP A 25 1 6 HELIX 3 AA3 TYR A 26 HIS A 29 5 4 HELIX 4 AA4 ASN A 35 ASP A 37 5 3 HELIX 5 AA5 LYS A 74 ARG A 89 1 16 HELIX 6 AA6 ASP A 120 LEU A 128 1 9 HELIX 7 AA7 THR A 129 MET A 150 1 22 HELIX 8 AA8 LYS A 158 HIS A 160 5 3 HELIX 9 AA9 ASP A 175 ALA A 179 5 5 HELIX 10 AB1 SER A 194 LYS A 198 5 5 HELIX 11 AB2 GLY A 199 VAL A 204 1 6 HELIX 12 AB3 TYR A 211 ARG A 228 1 18 HELIX 13 AB4 ASP A 237 GLY A 250 1 14 HELIX 14 AB5 GLY A 250 TYR A 261 1 12 HELIX 15 AB6 ASP A 266 GLY A 274 1 9 HELIX 16 AB7 ARG A 280 VAL A 285 5 6 HELIX 17 AB8 ASN A 289 VAL A 293 5 5 HELIX 18 AB9 SER A 294 LEU A 305 1 12 HELIX 19 AC1 ASP A 308 ARG A 312 5 5 HELIX 20 AC2 THR A 314 GLU A 320 1 7 HELIX 21 AC3 HIS A 321 TYR A 323 5 3 HELIX 22 AC4 PHE A 324 LYS A 329 1 6 SHEET 1 AA1 5 TYR A 39 GLY A 48 0 SHEET 2 AA1 5 SER A 51 ASN A 58 -1 O SER A 51 N GLY A 48 SHEET 3 AA1 5 LYS A 64 LEU A 70 -1 O VAL A 65 N ALA A 56 SHEET 4 AA1 5 PRO A 109 GLU A 114 -1 O PHE A 113 N VAL A 66 SHEET 5 AA1 5 LEU A 97 LYS A 102 -1 N ALA A 98 O VAL A 112 SHEET 1 AA2 2 ILE A 152 MET A 153 0 SHEET 2 AA2 2 GLU A 180 PHE A 181 -1 O GLU A 180 N MET A 153 SHEET 1 AA3 2 VAL A 162 ASP A 165 0 SHEET 2 AA3 2 LYS A 170 LEU A 173 -1 O LYS A 170 N ASP A 165 LINK C DAS B 2 N ASP B 3 1555 1555 1.33 LINK N DAS B 2 CCH A0Z B 101 1555 1555 1.43 LINK C DAS C 2 N ASP C 3 1555 1555 1.33 LINK N DAS C 2 CCH A0Z C 101 1555 1555 1.43 LINK C DAS D 2 N ASP D 3 1555 1555 1.34 LINK N DAS D 2 CCH A0Z D 101 1555 1555 1.43 LINK O TRP A 33 NA NA A 401 1555 4566 2.67 LINK O THR A 326 NA NA A 401 1555 1555 2.71 LINK NA NA A 401 O HOH A 654 1555 1555 2.50 LINK NA NA A 401 O HOH A 662 1555 1555 2.44 LINK NA NA A 401 O HOH A 674 1555 1555 2.16 LINK NA NA A 401 O HOH A 709 1555 1555 2.58 CISPEP 1 GLU A 230 PRO A 231 0 -9.85 SITE 1 AC1 6 TRP A 33 THR A 326 HOH A 654 HOH A 662 SITE 2 AC1 6 HOH A 674 HOH A 709 SITE 1 AC2 12 ARG A 47 GLY A 48 VAL A 53 PHE A 113 SITE 2 AC2 12 GLU A 114 VAL A 116 LYS A 158 ASP A 175 SITE 3 AC2 12 HOH A 737 HOH A 769 DAS B 2 HOH B 201 SITE 1 AC3 5 HOH A 572 ASP C 4 A0Z C 101 HOH C 201 SITE 2 AC3 5 A0Z D 101 SITE 1 AC4 14 TYR A 39 LEU A 41 LYS A 44 VAL A 101 SITE 2 AC4 14 THR A 108 HIS A 236 ARG A 244 HOH A 572 SITE 3 AC4 14 HOH A 575 HOH A 725 HOH A 780 ASP C 3 SITE 4 AC4 14 HOH C 201 A0Z D 101 SITE 1 AC5 5 ASP A 266 PRO A 267 ARG A 268 ASP D 4 SITE 2 AC5 5 A0Z D 101 SITE 1 AC6 14 LEU A 41 VAL A 42 ASP A 237 TYR A 239 SITE 2 AC6 14 ASP A 240 ASP A 266 PRO A 267 ARG A 268 SITE 3 AC6 14 ILE A 272 DAS C 2 A0Z C 101 HOH C 203 SITE 4 AC6 14 ASP D 3 HOH D 202 CRYST1 47.503 85.171 90.432 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021051 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011058 0.00000