HEADER TRANSFERASE 03-SEP-19 6SPY TITLE CRYSTAL STRUCTURE OF CAMP-DEPENDENT PROTEIN KINASE A (CHO PKA) IN TITLE 2 COMPLEX WITH 6-(MORPHOLIN-4-YL)PYRIDINE-3-CARBOXAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: PRKACA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHOTRANSFERASE, SIGNALLING PATHWAYS, GLYCOGEN METABOLISM, KEYWDS 2 SERINE/THREONINE KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.OEBBEKE,C.SIEFKER,A.HEINE,G.KLEBE REVDAT 4 24-JAN-24 6SPY 1 REMARK REVDAT 3 30-DEC-20 6SPY 1 JRNL REVDAT 2 09-DEC-20 6SPY 1 JRNL REVDAT 1 30-SEP-20 6SPY 0 JRNL AUTH M.OEBBEKE,C.SIEFKER,B.WAGNER,A.HEINE,G.KLEBE JRNL TITL FRAGMENT BINDING TO KINASE HINGE: IF CHARGE DISTRIBUTION AND JRNL TITL 2 LOCAL PK A SHIFTS MISLEAD POPULAR BIOISOSTERISM CONCEPTS. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 60 252 2021 JRNL REFN ESSN 1521-3773 JRNL PMID 33021032 JRNL DOI 10.1002/ANIE.202011295 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 47309 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.182 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7500 - 4.1100 0.97 2819 149 0.1701 0.1771 REMARK 3 2 4.1100 - 3.2600 0.99 2731 144 0.1512 0.1441 REMARK 3 3 3.2600 - 2.8500 0.99 2711 142 0.1565 0.1588 REMARK 3 4 2.8500 - 2.5900 0.97 2626 139 0.1606 0.1880 REMARK 3 5 2.5900 - 2.4000 0.99 2672 140 0.1503 0.1981 REMARK 3 6 2.4000 - 2.2600 0.99 2665 140 0.1423 0.1812 REMARK 3 7 2.2600 - 2.1500 0.99 2651 140 0.1410 0.1550 REMARK 3 8 2.1500 - 2.0600 0.99 2644 139 0.1493 0.1966 REMARK 3 9 2.0600 - 1.9800 0.99 2667 141 0.1575 0.2517 REMARK 3 10 1.9800 - 1.9100 0.96 2555 134 0.1623 0.1911 REMARK 3 11 1.9100 - 1.8500 0.98 2603 137 0.1636 0.2164 REMARK 3 12 1.8500 - 1.8000 0.98 2627 139 0.1697 0.1964 REMARK 3 13 1.8000 - 1.7500 0.98 2621 138 0.1741 0.2264 REMARK 3 14 1.7500 - 1.7100 0.98 2603 137 0.1808 0.2354 REMARK 3 15 1.7100 - 1.6700 0.98 2592 137 0.1958 0.2083 REMARK 3 16 1.6700 - 1.6300 0.98 2599 136 0.2090 0.2332 REMARK 3 17 1.6300 - 1.6000 0.96 2556 135 0.2132 0.2448 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2914 REMARK 3 ANGLE : 0.986 3964 REMARK 3 CHIRALITY : 0.058 417 REMARK 3 PLANARITY : 0.007 518 REMARK 3 DIHEDRAL : 15.831 1730 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6728 26.3628 29.9806 REMARK 3 T TENSOR REMARK 3 T11: 0.2374 T22: 0.1582 REMARK 3 T33: 0.2117 T12: -0.0476 REMARK 3 T13: 0.0205 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 0.0923 L22: 0.0652 REMARK 3 L33: 0.0492 L12: -0.0732 REMARK 3 L13: -0.0002 L23: 0.0195 REMARK 3 S TENSOR REMARK 3 S11: 0.1115 S12: -0.1002 S13: 0.1033 REMARK 3 S21: 0.0585 S22: -0.0944 S23: -0.0420 REMARK 3 S31: -0.1109 S32: -0.0860 S33: -0.0010 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9578 6.7558 9.6266 REMARK 3 T TENSOR REMARK 3 T11: 0.1764 T22: 0.1614 REMARK 3 T33: 0.1600 T12: 0.0060 REMARK 3 T13: 0.0016 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.1061 L22: 0.5179 REMARK 3 L33: 0.4603 L12: -0.1855 REMARK 3 L13: -0.0834 L23: 0.4031 REMARK 3 S TENSOR REMARK 3 S11: 0.0654 S12: 0.0915 S13: -0.0484 REMARK 3 S21: -0.0872 S22: -0.0693 S23: 0.0487 REMARK 3 S31: -0.1243 S32: 0.0113 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.8724 15.6316 16.3001 REMARK 3 T TENSOR REMARK 3 T11: 0.1940 T22: 0.1571 REMARK 3 T33: 0.1641 T12: 0.0068 REMARK 3 T13: 0.0093 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.2996 L22: 0.3696 REMARK 3 L33: 0.1443 L12: -0.1427 REMARK 3 L13: -0.2056 L23: 0.0757 REMARK 3 S TENSOR REMARK 3 S11: 0.0517 S12: 0.0520 S13: 0.0206 REMARK 3 S21: -0.1065 S22: -0.0765 S23: -0.0625 REMARK 3 S31: -0.1221 S32: -0.0080 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6381 -0.2002 26.5962 REMARK 3 T TENSOR REMARK 3 T11: 0.1051 T22: 0.0806 REMARK 3 T33: 0.0867 T12: 0.0211 REMARK 3 T13: 0.0029 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.1467 L22: 0.1158 REMARK 3 L33: 0.2359 L12: 0.0312 REMARK 3 L13: -0.1415 L23: -0.1443 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.0193 S13: -0.0990 REMARK 3 S21: 0.0052 S22: -0.0467 S23: -0.0634 REMARK 3 S31: -0.0535 S32: -0.0792 S33: 0.0777 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6702 12.6441 30.0878 REMARK 3 T TENSOR REMARK 3 T11: 0.1377 T22: 0.1318 REMARK 3 T33: 0.1349 T12: 0.0231 REMARK 3 T13: -0.0063 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.6401 L22: 0.1777 REMARK 3 L33: 0.6236 L12: 0.1142 REMARK 3 L13: -0.3503 L23: 0.0509 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: 0.0138 S13: 0.0143 REMARK 3 S21: -0.0352 S22: 0.0024 S23: 0.0058 REMARK 3 S31: -0.0758 S32: -0.0619 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2679 4.3546 29.8902 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.1826 REMARK 3 T33: 0.2922 T12: -0.0193 REMARK 3 T13: -0.0552 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.0189 L22: 0.0406 REMARK 3 L33: 0.0562 L12: 0.0138 REMARK 3 L13: 0.0312 L23: 0.0081 REMARK 3 S TENSOR REMARK 3 S11: 0.0521 S12: -0.2028 S13: -0.2248 REMARK 3 S21: -0.1980 S22: 0.0985 S23: 0.4852 REMARK 3 S31: 0.1715 S32: -0.2413 S33: 0.0017 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5647 12.1944 43.9871 REMARK 3 T TENSOR REMARK 3 T11: 0.1521 T22: 0.1502 REMARK 3 T33: 0.1434 T12: 0.0285 REMARK 3 T13: 0.0067 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.2945 L22: 0.1164 REMARK 3 L33: 0.2404 L12: -0.0078 REMARK 3 L13: 0.1505 L23: -0.1420 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: -0.1629 S13: 0.0635 REMARK 3 S21: 0.1676 S22: 0.0729 S23: -0.0115 REMARK 3 S31: -0.1623 S32: -0.1128 S33: 0.0023 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7124 4.9921 19.3849 REMARK 3 T TENSOR REMARK 3 T11: 0.1239 T22: 0.1508 REMARK 3 T33: 0.1557 T12: -0.0154 REMARK 3 T13: -0.0023 T23: 0.0158 REMARK 3 L TENSOR REMARK 3 L11: 0.3399 L22: 0.6873 REMARK 3 L33: 0.6018 L12: -0.2952 REMARK 3 L13: -0.4478 L23: 0.5003 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: 0.0229 S13: -0.0359 REMARK 3 S21: -0.1179 S22: -0.0545 S23: -0.0063 REMARK 3 S31: -0.0273 S32: 0.0057 S33: 0.0021 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47330 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 12.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48400 REMARK 200 FOR SHELL : 2.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6F14 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES-BIS-TRIS-BUFFER, 1 MM REMARK 280 DITHIOTHREITOL, 0.1 MM SODIUM EDTA, 75 MM LICL, 0.03 MEGA 8 AND REMARK 280 23 % METHANOL (V/V)0.003 ML DROP VOLUME, 0.5 ML RESERVOIR VOLUME, REMARK 280 PH 6.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.75600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.74800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.74800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.75600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SER A 10 REMARK 465 GLU A 11 REMARK 465 GLN A 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CD CE NZ REMARK 470 LYS A 29 NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 78 CE NZ REMARK 470 LYS A 81 CD CE NZ REMARK 470 LYS A 83 CD CE NZ REMARK 470 LYS A 105 CD CE NZ REMARK 470 GLN A 176 CD OE1 NE2 REMARK 470 GLN A 177 CG CD OE1 NE2 REMARK 470 PHE A 239 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 242 CG CD OE1 NE2 REMARK 470 ILE A 244 CD1 REMARK 470 GLN A 245 NE2 REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 285 CD CE NZ REMARK 470 LYS A 295 CD CE NZ REMARK 470 LYS A 309 CD CE NZ REMARK 470 GLU A 311 CG CD OE1 OE2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 LYS A 319 CE NZ REMARK 470 ILE A 339 CG1 CG2 CD1 REMARK 470 LYS A 345 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 166 39.07 -146.50 REMARK 500 ASP A 184 93.24 76.95 REMARK 500 LEU A 273 41.86 -90.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LR8 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 403 DBREF 6SPY A 0 350 UNP P25321 KAPCA_CRIGR 1 351 SEQADV 6SPY GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 6SPY HIS A -1 UNP P25321 EXPRESSION TAG SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SER SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE MODRES 6SPY SEP A 139 SER MODIFIED RESIDUE MODRES 6SPY TPO A 197 THR MODIFIED RESIDUE MODRES 6SPY SEP A 338 SER MODIFIED RESIDUE HET SEP A 139 14 HET TPO A 197 17 HET SEP A 338 14 HET LR8 A 401 15 HET DMS A 402 4 HET MPD A 403 8 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM LR8 6-MORPHOLIN-4-YLPYRIDINE-3-CARBOXAMIDE HETNAM DMS DIMETHYL SULFOXIDE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 LR8 C10 H13 N3 O2 FORMUL 3 DMS C2 H6 O S FORMUL 4 MPD C6 H14 O2 FORMUL 5 HOH *302(H2 O) HELIX 1 AA1 GLU A 13 SER A 32 1 20 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 GLN A 96 1 13 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SEP A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 GLY A 253 1 12 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 ASP A 276 ARG A 280 5 5 HELIX 14 AB5 VAL A 288 ASN A 293 1 6 HELIX 15 AB6 HIS A 294 ALA A 298 5 5 HELIX 16 AB7 ASP A 301 GLN A 307 1 7 HELIX 17 AB8 GLY A 344 THR A 348 5 5 SHEET 1 AA1 5 PHE A 43 THR A 51 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 120 N ALA A 70 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C PHE A 138 N SEP A 139 1555 1555 1.33 LINK C SEP A 139 N GLU A 140 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.33 SITE 1 AC1 11 LEU A 49 GLY A 50 VAL A 57 ALA A 70 SITE 2 AC1 11 GLU A 121 TYR A 122 VAL A 123 GLU A 127 SITE 3 AC1 11 LEU A 173 THR A 183 PHE A 327 SITE 1 AC2 2 ASN A 36 ALA A 38 SITE 1 AC3 5 VAL A 15 LEU A 152 GLU A 155 TYR A 306 SITE 2 AC3 5 HOH A 622 CRYST1 51.512 71.340 97.496 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019413 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010257 0.00000