HEADER STRUCTURAL PROTEIN 03-SEP-19 6SPZ TITLE CRYSTAL STRUCTURE OF PDZ1-2 FROM PSD-95 WITH PEPTIDE LIGAND SEQUENCE TITLE 2 RRESEI BOUND TO BOTH DOMAINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DISKS LARGE HOMOLOG 4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: POSTSYNAPTIC DENSITY PROTEIN 95,PSD-95,SYNAPSE-ASSOCIATED COMPND 5 PROTEIN 90,SAP90; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ARG-ARG-GLU-SER-GLU-ILE; COMPND 9 CHAIN: P, Q; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: SYNTHEIC PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DLG4, PSD95; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: POPINF; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606 KEYWDS PSD-95 FRAGMENT, CLUSTERING, PROTEIN-COMPLEX, RECEPTOR-BINDING, KEYWDS 2 MEMBRANE ASSOCIATED, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.RODZLI,C.W.LEVY,S.M.PRINCE REVDAT 4 24-JAN-24 6SPZ 1 JRNL REVDAT 3 19-AUG-20 6SPZ 1 JRNL REVDAT 2 22-JUL-20 6SPZ 1 JRNL REVDAT 1 02-OCT-19 6SPZ 0 JRNL AUTH N.A.RODZLI,M.P.LOCKHART-CAIRNS,C.W.LEVY,J.CHIPPERFIELD, JRNL AUTH 2 L.BIRD,C.BALDOCK,S.M.PRINCE JRNL TITL THE DUAL PDZ DOMAIN FROM POSTSYNAPTIC DENSITY PROTEIN 95 JRNL TITL 2 FORMS A SCAFFOLD WITH PEPTIDE LIGAND. JRNL REF BIOPHYS.J. V. 119 667 2020 JRNL REFN ESSN 1542-0086 JRNL PMID 32652058 JRNL DOI 10.1016/J.BPJ.2020.06.018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.RODZLI,M.P.LOCKHART-CAIRNS,C.W.LEVY,J.CHIPPERFIELD,L.BIRD, REMARK 1 AUTH 2 C.BALDOCK,S.M.PRINCE REMARK 1 TITL HOW THE DUAL PDZ DOMAIN FROM POSTSYNAPTIC DENSITY PROTEIN 95 REMARK 1 TITL 2 CLUSTERS ION CHANNELS AND RECEPTORS. REMARK 1 REF BIORXIV 2019 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/775726 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 2014/05/25 REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 703 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 920 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1526 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22600 REMARK 3 B22 (A**2) : 0.22600 REMARK 3 B33 (A**2) : -0.45100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.185 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.155 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.386 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1620 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2184 ; 1.139 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 206 ; 5.460 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;34.267 ;24.507 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 289 ;12.131 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;11.770 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 245 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1229 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 661 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1047 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 45 ; 0.116 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 827 ; 1.754 ; 3.134 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1032 ; 3.072 ; 4.667 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 793 ; 1.941 ; 3.624 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1152 ; 3.253 ; 5.284 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : Chains P Q REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 61 A 151 REMARK 3 RESIDUE RANGE : P 423 P 427 REMARK 3 ORIGIN FOR THE GROUP (A): 15.0040 34.6210 0.2410 REMARK 3 T TENSOR REMARK 3 T11: 0.0735 T22: 0.0890 REMARK 3 T33: 0.0498 T12: 0.0625 REMARK 3 T13: 0.0486 T23: 0.0543 REMARK 3 L TENSOR REMARK 3 L11: 2.4368 L22: 3.5596 REMARK 3 L33: 3.5161 L12: -0.1885 REMARK 3 L13: 0.0745 L23: -0.3447 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: -0.0927 S13: 0.0869 REMARK 3 S21: 0.0444 S22: 0.1561 S23: 0.2073 REMARK 3 S31: -0.2681 S32: -0.3032 S33: -0.1565 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 158 A 244 REMARK 3 RESIDUE RANGE : Q 423 Q 427 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5410 11.8310 24.1270 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.1901 REMARK 3 T33: 0.1044 T12: 0.0106 REMARK 3 T13: 0.0077 T23: 0.1314 REMARK 3 L TENSOR REMARK 3 L11: 1.5648 L22: 2.9813 REMARK 3 L33: 5.7671 L12: 0.5692 REMARK 3 L13: 0.0510 L23: -1.2049 REMARK 3 S TENSOR REMARK 3 S11: 0.1428 S12: 0.2437 S13: 0.1597 REMARK 3 S21: -0.1617 S22: 0.0957 S23: 0.1856 REMARK 3 S31: -0.0683 S32: -0.1020 S33: -0.2385 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6SPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2, XDS REMARK 200 DATA SCALING SOFTWARE : SCALA, POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13236 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 48.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RL7, 3RL8 REMARK 200 REMARK 200 REMARK: TETRAGONAL BIPYRAMID REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M NA/K PHOSPHATE, 50% REMARK 280 V/V PEG 200. MATRIX MICROSEEDING WITH APO CRYSTAL FORM (PDB ID: REMARK 280 6SPV)., PH 6.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.25000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 25.25000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.18500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.09250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.25000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.27750 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.25000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 88.18500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 25.25000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 132.27750 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 25.25000 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.09250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 53 REMARK 465 PRO A 54 REMARK 465 ASN A 55 REMARK 465 GLY A 56 REMARK 465 THR A 57 REMARK 465 SER A 247 REMARK 465 ASN A 248 REMARK 465 ALA A 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 88 107.03 74.40 REMARK 500 ASN A 114 -2.35 79.15 REMARK 500 ASN A 121 -118.71 45.12 REMARK 500 ASN A 216 -121.58 50.23 REMARK 500 GLU P 426 59.42 71.09 REMARK 500 GLU Q 426 85.69 75.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GSH A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6SPV RELATED DB: PDB REMARK 900 APO (UNLIGANDED) STRUCTURE DBREF 6SPZ A 55 249 UNP P78352 DLG4_HUMAN 55 249 DBREF 6SPZ P 422 427 PDB 6SPZ 6SPZ 422 427 DBREF 6SPZ Q 422 427 PDB 6SPZ 6SPZ 422 427 SEQADV 6SPZ GLY A 53 UNP P78352 EXPRESSION TAG SEQADV 6SPZ PRO A 54 UNP P78352 EXPRESSION TAG SEQRES 1 A 197 GLY PRO ASN GLY THR GLU GLY GLU MET GLU TYR GLU GLU SEQRES 2 A 197 ILE THR LEU GLU ARG GLY ASN SER GLY LEU GLY PHE SER SEQRES 3 A 197 ILE ALA GLY GLY THR ASP ASN PRO HIS ILE GLY ASP ASP SEQRES 4 A 197 PRO SER ILE PHE ILE THR LYS ILE ILE PRO GLY GLY ALA SEQRES 5 A 197 ALA ALA GLN ASP GLY ARG LEU ARG VAL ASN ASP SER ILE SEQRES 6 A 197 LEU PHE VAL ASN GLU VAL ASP VAL ARG GLU VAL THR HIS SEQRES 7 A 197 SER ALA ALA VAL GLU ALA LEU LYS GLU ALA GLY SER ILE SEQRES 8 A 197 VAL ARG LEU TYR VAL MET ARG ARG LYS PRO PRO ALA GLU SEQRES 9 A 197 LYS VAL MET GLU ILE LYS LEU ILE LYS GLY PRO LYS GLY SEQRES 10 A 197 LEU GLY PHE SER ILE ALA GLY GLY VAL GLY ASN GLN HIS SEQRES 11 A 197 ILE PRO GLY ASP ASN SER ILE TYR VAL THR LYS ILE ILE SEQRES 12 A 197 GLU GLY GLY ALA ALA HIS LYS ASP GLY ARG LEU GLN ILE SEQRES 13 A 197 GLY ASP LYS ILE LEU ALA VAL ASN SER VAL GLY LEU GLU SEQRES 14 A 197 ASP VAL MET HIS GLU ASP ALA VAL ALA ALA LEU LYS ASN SEQRES 15 A 197 THR TYR ASP VAL VAL TYR LEU LYS VAL ALA LYS PRO SER SEQRES 16 A 197 ASN ALA SEQRES 1 P 6 ARG ARG GLU SER GLU ILE SEQRES 1 Q 6 ARG ARG GLU SER GLU ILE HET GSH A 301 20 HETNAM GSH GLUTATHIONE FORMUL 4 GSH C10 H17 N3 O6 S FORMUL 5 HOH *56(H2 O) HELIX 1 AA1 GLY A 103 GLY A 109 1 7 HELIX 2 AA2 THR A 129 GLU A 139 1 11 HELIX 3 AA3 GLY A 198 GLY A 204 1 7 HELIX 4 AA4 MET A 224 ASN A 234 1 11 SHEET 1 AA1 4 MET A 61 GLU A 69 0 SHEET 2 AA1 4 ILE A 143 ARG A 151 -1 O LEU A 146 N ILE A 66 SHEET 3 AA1 4 SER A 116 VAL A 120 -1 N SER A 116 O MET A 149 SHEET 4 AA1 4 VAL A 123 ASP A 124 -1 O VAL A 123 N VAL A 120 SHEET 1 AA2 6 MET A 61 GLU A 69 0 SHEET 2 AA2 6 ILE A 143 ARG A 151 -1 O LEU A 146 N ILE A 66 SHEET 3 AA2 6 SER A 116 VAL A 120 -1 N SER A 116 O MET A 149 SHEET 4 AA2 6 ILE A 94 ILE A 99 -1 N ILE A 94 O ILE A 117 SHEET 5 AA2 6 PHE A 77 GLY A 81 -1 N ALA A 80 O PHE A 95 SHEET 6 AA2 6 GLU P 424 ILE P 427 -1 O ILE P 427 N PHE A 77 SHEET 1 AA3 4 LYS A 157 ILE A 164 0 SHEET 2 AA3 4 VAL A 238 LYS A 245 -1 O LEU A 241 N ILE A 161 SHEET 3 AA3 4 LYS A 211 VAL A 215 -1 N ALA A 214 O LYS A 242 SHEET 4 AA3 4 VAL A 218 GLY A 219 -1 O VAL A 218 N VAL A 215 SHEET 1 AA4 6 LYS A 157 ILE A 164 0 SHEET 2 AA4 6 VAL A 238 LYS A 245 -1 O LEU A 241 N ILE A 161 SHEET 3 AA4 6 LYS A 211 VAL A 215 -1 N ALA A 214 O LYS A 242 SHEET 4 AA4 6 ILE A 189 ILE A 194 -1 N ILE A 189 O ILE A 212 SHEET 5 AA4 6 PHE A 172 GLY A 176 -1 N ALA A 175 O TYR A 190 SHEET 6 AA4 6 GLU Q 424 ILE Q 427 -1 O ILE Q 427 N PHE A 172 SITE 1 AC1 12 THR A 67 GLU A 69 ASP A 108 ARG A 110 SITE 2 AC1 12 ASN A 121 GLU A 122 ARG A 145 TYR A 147 SITE 3 AC1 12 LYS A 162 VAL A 238 TYR A 240 HOH A 430 CRYST1 50.500 50.500 176.370 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019802 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019802 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005670 0.00000