HEADER HYDROLASE 04-SEP-19 6SQW TITLE MOUSE DCTPASE IN COMPLEX WITH 5-ME-DCMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DCTP PYROPHOSPHATASE 1; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: DEOXYCYTIDINE-TRIPHOSPHATASE 1,DCTPASE 1,RS21-C6; COMPND 5 EC: 3.6.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: DCTPP1, TDRG-TL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS 5-ME-DCMP COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.R.SCALETTI,M.CLAESSON,H.HELLEDAY,A.S.JEMTH,P.STENMARK REVDAT 3 15-MAY-24 6SQW 1 LINK REVDAT 2 11-MAR-20 6SQW 1 JRNL REVDAT 1 29-JAN-20 6SQW 0 JRNL AUTH E.SCALETTI,M.CLAESSON,T.HELLEDAY,A.S.JEMTH,P.STENMARK JRNL TITL THE FIRST STRUCTURE OF AN ACTIVE MAMMALIAN DCTPASE AND ITS JRNL TITL 2 COMPLEXES WITH SUBSTRATE ANALOGS AND PRODUCTS. JRNL REF J.MOL.BIOL. V. 432 1126 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 31954130 JRNL DOI 10.1016/J.JMB.2020.01.005 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22280 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1253 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1616 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1840 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.137 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.143 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1980 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1802 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2709 ; 1.596 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4184 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 234 ; 5.198 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;42.291 ;23.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 317 ;13.785 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.858 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 288 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2190 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 414 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 21 131 D 21 131 7278 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 150 REMARK 3 ORIGIN FOR THE GROUP (A): -7.1976 10.5316 35.5517 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.0598 REMARK 3 T33: 0.1485 T12: 0.0603 REMARK 3 T13: -0.0937 T23: -0.0733 REMARK 3 L TENSOR REMARK 3 L11: 1.0145 L22: 1.2651 REMARK 3 L33: 1.8187 L12: 0.3331 REMARK 3 L13: -0.0298 L23: 0.0404 REMARK 3 S TENSOR REMARK 3 S11: -0.1210 S12: -0.1861 S13: 0.2714 REMARK 3 S21: -0.2394 S22: -0.1179 S23: 0.1747 REMARK 3 S31: -0.2620 S32: -0.1081 S33: 0.2388 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 21 D 150 REMARK 3 ORIGIN FOR THE GROUP (A): 11.7728 -7.8092 34.8731 REMARK 3 T TENSOR REMARK 3 T11: 0.1377 T22: 0.2269 REMARK 3 T33: 0.1669 T12: 0.1155 REMARK 3 T13: 0.0807 T23: 0.0700 REMARK 3 L TENSOR REMARK 3 L11: 0.9428 L22: 1.0385 REMARK 3 L33: 2.3691 L12: 0.6810 REMARK 3 L13: -0.1654 L23: 0.4855 REMARK 3 S TENSOR REMARK 3 S11: -0.0788 S12: -0.1747 S13: -0.1532 REMARK 3 S21: -0.1652 S22: 0.0211 S23: -0.2570 REMARK 3 S31: 0.2391 S32: 0.6096 S33: 0.0577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 6SQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104166. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23533 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 54.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.75, 2.4 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.45250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.25800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.25800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.22625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.25800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.25800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 105.67875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.25800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.25800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.22625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.25800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.25800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 105.67875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.45250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 70.45250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 GLY A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 GLY A 10 REMARK 465 THR A 11 REMARK 465 VAL A 12 REMARK 465 GLY A 13 REMARK 465 GLN A 14 REMARK 465 GLU A 15 REMARK 465 ASP A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 ARG A 135 REMARK 465 GLY A 136 REMARK 465 SER A 137 REMARK 465 ALA A 138 REMARK 465 CYS A 139 REMARK 465 LYS A 140 REMARK 465 TYR A 141 REMARK 465 THR A 142 REMARK 465 ASP A 143 REMARK 465 LEU A 144 REMARK 465 PRO A 145 REMARK 465 ARG A 146 REMARK 465 GLY A 147 REMARK 465 THR A 148 REMARK 465 ILE A 149 REMARK 465 SER A 150 REMARK 465 GLU A 151 REMARK 465 ASN A 152 REMARK 465 GLN A 153 REMARK 465 ALA A 154 REMARK 465 VAL A 155 REMARK 465 GLY A 156 REMARK 465 ALA A 157 REMARK 465 GLY A 158 REMARK 465 ASP A 159 REMARK 465 PRO A 160 REMARK 465 ALA A 161 REMARK 465 SER A 162 REMARK 465 GLU A 163 REMARK 465 LEU A 164 REMARK 465 ARG A 165 REMARK 465 ASP A 166 REMARK 465 GLN A 167 REMARK 465 ALA A 168 REMARK 465 SER A 169 REMARK 465 THR A 170 REMARK 465 MET D 1 REMARK 465 SER D 2 REMARK 465 THR D 3 REMARK 465 ALA D 4 REMARK 465 GLY D 5 REMARK 465 ASP D 6 REMARK 465 GLY D 7 REMARK 465 GLU D 8 REMARK 465 ARG D 9 REMARK 465 GLY D 10 REMARK 465 THR D 11 REMARK 465 VAL D 12 REMARK 465 GLY D 13 REMARK 465 GLN D 14 REMARK 465 GLU D 15 REMARK 465 ASP D 16 REMARK 465 SER D 17 REMARK 465 ALA D 18 REMARK 465 ALA D 19 REMARK 465 ALA D 20 REMARK 465 LEU D 133 REMARK 465 SER D 134 REMARK 465 ARG D 135 REMARK 465 GLY D 136 REMARK 465 SER D 137 REMARK 465 ALA D 138 REMARK 465 CYS D 139 REMARK 465 LYS D 140 REMARK 465 TYR D 141 REMARK 465 THR D 142 REMARK 465 ASP D 143 REMARK 465 LEU D 144 REMARK 465 PRO D 145 REMARK 465 ARG D 146 REMARK 465 GLY D 147 REMARK 465 THR D 148 REMARK 465 ILE D 149 REMARK 465 SER D 150 REMARK 465 GLU D 151 REMARK 465 ASN D 152 REMARK 465 GLN D 153 REMARK 465 ALA D 154 REMARK 465 VAL D 155 REMARK 465 GLY D 156 REMARK 465 ALA D 157 REMARK 465 GLY D 158 REMARK 465 ASP D 159 REMARK 465 PRO D 160 REMARK 465 ALA D 161 REMARK 465 SER D 162 REMARK 465 GLU D 163 REMARK 465 LEU D 164 REMARK 465 ARG D 165 REMARK 465 ASP D 166 REMARK 465 GLN D 167 REMARK 465 ALA D 168 REMARK 465 SER D 169 REMARK 465 THR D 170 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG D 24 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 24 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 51 40.80 -104.63 REMARK 500 HIS D 51 43.31 -102.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 63 OE1 REMARK 620 2 GLU A 66 OE2 84.2 REMARK 620 3 GLU A 95 OE1 95.1 88.0 REMARK 620 4 ASP A 98 OD2 92.1 176.3 91.8 REMARK 620 5 HOH A 328 O 86.3 85.7 173.3 94.6 REMARK 620 6 HOH A 350 O 167.9 88.9 94.6 94.9 83.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 63 OE1 REMARK 620 2 GLU D 66 OE2 83.3 REMARK 620 3 GLU D 95 OE1 96.7 88.8 REMARK 620 4 ASP D 98 OD2 91.7 174.5 94.2 REMARK 620 5 HOH D 303 O 79.8 85.3 173.5 91.4 REMARK 620 6 HOH D 339 O 167.6 92.3 94.9 92.1 88.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5CM A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 5CM D 202 DBREF 6SQW A 1 170 UNP Q9QY93 DCTP1_MOUSE 1 170 DBREF 6SQW D 1 170 UNP Q9QY93 DCTP1_MOUSE 1 170 SEQADV 6SQW MET A 21 UNP Q9QY93 ARG 21 CONFLICT SEQADV 6SQW MET D 21 UNP Q9QY93 ARG 21 CONFLICT SEQRES 1 A 170 MET SER THR ALA GLY ASP GLY GLU ARG GLY THR VAL GLY SEQRES 2 A 170 GLN GLU ASP SER ALA ALA ALA MET PRO PHE ARG PHE SER SEQRES 3 A 170 PRO GLU PRO THR LEU GLU ASP ILE ARG ARG LEU HIS ALA SEQRES 4 A 170 GLU PHE ALA ALA GLU ARG ASP TRP GLU GLN PHE HIS GLN SEQRES 5 A 170 PRO ARG ASN LEU LEU LEU ALA LEU VAL GLY GLU VAL GLY SEQRES 6 A 170 GLU LEU ALA GLU LEU PHE GLN TRP LYS SER ASP THR GLU SEQRES 7 A 170 PRO GLY PRO GLN ALA TRP PRO PRO LYS GLU ARG ALA ALA SEQRES 8 A 170 LEU GLN GLU GLU LEU SER ASP VAL LEU ILE TYR LEU VAL SEQRES 9 A 170 ALA LEU ALA ALA ARG CYS HIS VAL ASP LEU PRO GLN ALA SEQRES 10 A 170 VAL ILE SER LYS MET ASP THR ASN ARG GLN ARG TYR PRO SEQRES 11 A 170 VAL HIS LEU SER ARG GLY SER ALA CYS LYS TYR THR ASP SEQRES 12 A 170 LEU PRO ARG GLY THR ILE SER GLU ASN GLN ALA VAL GLY SEQRES 13 A 170 ALA GLY ASP PRO ALA SER GLU LEU ARG ASP GLN ALA SER SEQRES 14 A 170 THR SEQRES 1 D 170 MET SER THR ALA GLY ASP GLY GLU ARG GLY THR VAL GLY SEQRES 2 D 170 GLN GLU ASP SER ALA ALA ALA MET PRO PHE ARG PHE SER SEQRES 3 D 170 PRO GLU PRO THR LEU GLU ASP ILE ARG ARG LEU HIS ALA SEQRES 4 D 170 GLU PHE ALA ALA GLU ARG ASP TRP GLU GLN PHE HIS GLN SEQRES 5 D 170 PRO ARG ASN LEU LEU LEU ALA LEU VAL GLY GLU VAL GLY SEQRES 6 D 170 GLU LEU ALA GLU LEU PHE GLN TRP LYS SER ASP THR GLU SEQRES 7 D 170 PRO GLY PRO GLN ALA TRP PRO PRO LYS GLU ARG ALA ALA SEQRES 8 D 170 LEU GLN GLU GLU LEU SER ASP VAL LEU ILE TYR LEU VAL SEQRES 9 D 170 ALA LEU ALA ALA ARG CYS HIS VAL ASP LEU PRO GLN ALA SEQRES 10 D 170 VAL ILE SER LYS MET ASP THR ASN ARG GLN ARG TYR PRO SEQRES 11 D 170 VAL HIS LEU SER ARG GLY SER ALA CYS LYS TYR THR ASP SEQRES 12 D 170 LEU PRO ARG GLY THR ILE SER GLU ASN GLN ALA VAL GLY SEQRES 13 D 170 ALA GLY ASP PRO ALA SER GLU LEU ARG ASP GLN ALA SER SEQRES 14 D 170 THR HET MG A 201 1 HET 5CM A 202 21 HET MG D 201 1 HET 5CM D 202 21 HETNAM MG MAGNESIUM ION HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 5CM 2(C10 H16 N3 O7 P) FORMUL 7 HOH *178(H2 O) HELIX 1 AA1 THR A 30 ARG A 45 1 16 HELIX 2 AA2 ASP A 46 HIS A 51 5 6 HELIX 3 AA3 GLN A 52 GLN A 72 1 21 HELIX 4 AA4 GLY A 80 TRP A 84 5 5 HELIX 5 AA5 PRO A 85 CYS A 110 1 26 HELIX 6 AA6 ASP A 113 TYR A 129 1 17 HELIX 7 AA7 PRO A 130 SER A 134 5 5 HELIX 8 AA8 THR D 30 ARG D 45 1 16 HELIX 9 AA9 ASP D 46 HIS D 51 5 6 HELIX 10 AB1 GLN D 52 GLN D 72 1 21 HELIX 11 AB2 GLY D 80 TRP D 84 5 5 HELIX 12 AB3 PRO D 85 CYS D 110 1 26 HELIX 13 AB4 ASP D 113 TYR D 129 1 17 LINK OE1 GLU A 63 MG MG A 201 1555 1555 2.03 LINK OE2 GLU A 66 MG MG A 201 1555 1555 2.07 LINK OE1 GLU A 95 MG MG A 201 1555 1555 2.08 LINK OD2 ASP A 98 MG MG A 201 1555 1555 2.12 LINK MG MG A 201 O HOH A 328 1555 1555 2.12 LINK MG MG A 201 O HOH A 350 1555 1555 2.08 LINK OE1 GLU D 63 MG MG D 201 1555 1555 2.11 LINK OE2 GLU D 66 MG MG D 201 1555 1555 2.07 LINK OE1 GLU D 95 MG MG D 201 1555 1555 2.02 LINK OD2 ASP D 98 MG MG D 201 1555 1555 2.13 LINK MG MG D 201 O HOH D 303 1555 1555 2.07 LINK MG MG D 201 O HOH D 339 1555 1555 1.92 CISPEP 1 GLU A 28 PRO A 29 0 2.28 CISPEP 2 GLU D 28 PRO D 29 0 1.30 SITE 1 AC1 6 GLU A 63 GLU A 66 GLU A 95 ASP A 98 SITE 2 AC1 6 HOH A 328 HOH A 350 SITE 1 AC2 18 HIS A 38 TRP A 47 HIS A 51 ASP A 98 SITE 2 AC2 18 ILE A 101 TYR A 102 ASN A 125 ARG A 128 SITE 3 AC2 18 TYR A 129 HOH A 316 HOH A 328 HOH A 336 SITE 4 AC2 18 HOH A 343 HOH A 355 HOH A 361 MET D 21 SITE 5 AC2 18 TRP D 73 HOH D 345 SITE 1 AC3 6 GLU D 63 GLU D 66 GLU D 95 ASP D 98 SITE 2 AC3 6 HOH D 303 HOH D 339 SITE 1 AC4 17 MET A 21 TRP A 73 HIS D 38 TRP D 47 SITE 2 AC4 17 HIS D 51 ASP D 98 ILE D 101 TYR D 102 SITE 3 AC4 17 ASN D 125 ARG D 128 TYR D 129 HOH D 302 SITE 4 AC4 17 HOH D 303 HOH D 311 HOH D 313 HOH D 326 SITE 5 AC4 17 HOH D 333 CRYST1 58.516 58.516 140.905 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017089 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017089 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007097 0.00000