HEADER HYDROLASE 05-SEP-19 6SRF TITLE CRYSTAL STRUCTURE OF HUMAN PROLIDASE G278N VARIANT EXPRESSED IN THE TITLE 2 PRESENCE OF CHAPERONES COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-PRO DIPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: X-PRO DIPEPTIDASE,IMIDODIPEPTIDASE,PEPTIDASE D,PROLINE COMPND 5 DIPEPTIDASE,PROLIDASE; COMPND 6 EC: 3.4.13.9; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PEPD, PRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ARCTIC EXPRESS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DIPEPTIDASE, METALLOHYDROLASE, PROLIDASE, PATHOLOGICAL VARIANTS, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.WATOR,P.WILK REVDAT 3 24-JAN-24 6SRF 1 REMARK REVDAT 2 16-DEC-20 6SRF 1 JRNL LINK REVDAT 1 15-JUL-20 6SRF 0 JRNL AUTH E.WATOR,M.RUTKIEWICZ,M.S.WEISS,P.WILK JRNL TITL CO-EXPRESSION WITH CHAPERONES CAN AFFECT PROTEIN 3D JRNL TITL 2 STRUCTURE AS EXEMPLIFIED BY LOSS-OF-FUNCTION VARIANTS OF JRNL TITL 3 HUMAN PROLIDASE. JRNL REF FEBS LETT. V. 594 3045 2020 JRNL REFN ISSN 0014-5793 JRNL PMID 32598484 JRNL DOI 10.1002/1873-3468.13877 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 102287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8600 - 4.5528 1.00 7005 147 0.1724 0.2048 REMARK 3 2 4.5528 - 3.6141 1.00 6810 143 0.1319 0.1614 REMARK 3 3 3.6141 - 3.1573 1.00 6744 142 0.1425 0.1657 REMARK 3 4 3.1573 - 2.8687 1.00 6698 140 0.1626 0.1872 REMARK 3 5 2.8687 - 2.6631 1.00 6706 141 0.1715 0.2447 REMARK 3 6 2.6631 - 2.5061 1.00 6728 141 0.1857 0.2339 REMARK 3 7 2.5061 - 2.3806 1.00 6659 139 0.1868 0.2353 REMARK 3 8 2.3806 - 2.2770 1.00 6679 140 0.1961 0.2520 REMARK 3 9 2.2770 - 2.1893 1.00 6642 139 0.2002 0.2468 REMARK 3 10 2.1893 - 2.1138 1.00 6693 141 0.2099 0.2637 REMARK 3 11 2.1138 - 2.0477 1.00 6643 139 0.2289 0.2489 REMARK 3 12 2.0477 - 1.9891 1.00 6655 139 0.2674 0.3333 REMARK 3 13 1.9891 - 1.9368 1.00 6659 140 0.3019 0.3032 REMARK 3 14 1.9368 - 1.8895 1.00 6629 139 0.3207 0.3804 REMARK 3 15 1.8895 - 1.8470 0.94 6236 131 0.3323 0.3280 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6805 -20.1592 -10.7100 REMARK 3 T TENSOR REMARK 3 T11: 0.3561 T22: 0.2278 REMARK 3 T33: 0.1672 T12: 0.0039 REMARK 3 T13: -0.0455 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.4386 L22: 1.1045 REMARK 3 L33: 0.5322 L12: -0.0832 REMARK 3 L13: -0.1454 L23: 0.0595 REMARK 3 S TENSOR REMARK 3 S11: -0.0060 S12: -0.0595 S13: -0.0376 REMARK 3 S21: 0.4511 S22: 0.0282 S23: -0.0914 REMARK 3 S31: 0.0380 S32: 0.0195 S33: -0.0176 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3252 -15.4321 -39.2709 REMARK 3 T TENSOR REMARK 3 T11: 0.1839 T22: 0.2330 REMARK 3 T33: 0.2109 T12: -0.0015 REMARK 3 T13: 0.0104 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.4175 L22: 1.6606 REMARK 3 L33: 1.6247 L12: -0.7067 REMARK 3 L13: 1.1855 L23: -0.7637 REMARK 3 S TENSOR REMARK 3 S11: -0.0821 S12: -0.1462 S13: 0.0829 REMARK 3 S21: 0.0503 S22: 0.0525 S23: 0.0277 REMARK 3 S31: -0.1523 S32: -0.2483 S33: 0.0026 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 457 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8991 3.5466 -33.8153 REMARK 3 T TENSOR REMARK 3 T11: 0.1838 T22: 0.2205 REMARK 3 T33: 0.2077 T12: -0.0115 REMARK 3 T13: 0.0096 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.6268 L22: 1.5105 REMARK 3 L33: 0.8298 L12: -0.2038 REMARK 3 L13: 0.0996 L23: -0.4860 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.0330 S13: 0.0767 REMARK 3 S21: 0.0996 S22: 0.0055 S23: 0.1331 REMARK 3 S31: -0.0252 S32: -0.0224 S33: -0.0184 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 458 THROUGH 480 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2544 0.6703 -35.7299 REMARK 3 T TENSOR REMARK 3 T11: 0.1841 T22: 0.2378 REMARK 3 T33: 0.3238 T12: -0.0255 REMARK 3 T13: -0.0090 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 1.2645 L22: 1.7174 REMARK 3 L33: 4.3903 L12: -0.1282 REMARK 3 L13: 0.2510 L23: 1.0120 REMARK 3 S TENSOR REMARK 3 S11: 0.0217 S12: 0.1247 S13: 0.0868 REMARK 3 S21: 0.0440 S22: 0.0528 S23: -0.4865 REMARK 3 S31: -0.1141 S32: 0.4443 S33: -0.0751 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 504 THROUGH 505 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4254 -4.5503 -29.7073 REMARK 3 T TENSOR REMARK 3 T11: 0.2622 T22: 0.3400 REMARK 3 T33: 0.3024 T12: 0.0146 REMARK 3 T13: 0.0211 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 3.8998 L22: 5.4370 REMARK 3 L33: 1.6434 L12: -0.0572 REMARK 3 L13: 1.1953 L23: 1.0441 REMARK 3 S TENSOR REMARK 3 S11: -0.0321 S12: 0.2266 S13: -0.0495 REMARK 3 S21: -0.3310 S22: -0.0800 S23: -0.0342 REMARK 3 S31: 0.2197 S32: 0.1727 S33: 0.1197 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.5542 -28.4471 -36.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.2174 REMARK 3 T33: 0.2658 T12: 0.0020 REMARK 3 T13: -0.0385 T23: 0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.7982 L22: 1.3794 REMARK 3 L33: 0.4997 L12: 0.0866 REMARK 3 L13: -0.1585 L23: -0.2768 REMARK 3 S TENSOR REMARK 3 S11: -0.0188 S12: 0.0330 S13: 0.0501 REMARK 3 S21: -0.1082 S22: 0.1042 S23: 0.4056 REMARK 3 S31: -0.0129 S32: -0.0957 S33: -0.0884 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 213 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7322 -30.6684 -36.2805 REMARK 3 T TENSOR REMARK 3 T11: 0.2012 T22: 0.2301 REMARK 3 T33: 0.2463 T12: -0.0057 REMARK 3 T13: 0.0356 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 1.9105 L22: 1.7012 REMARK 3 L33: 1.8359 L12: -0.5261 REMARK 3 L13: 1.2370 L23: -0.6257 REMARK 3 S TENSOR REMARK 3 S11: -0.0447 S12: -0.1983 S13: -0.3577 REMARK 3 S21: 0.0878 S22: 0.1203 S23: -0.0296 REMARK 3 S31: 0.0370 S32: -0.1794 S33: -0.0603 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 253 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4277 -42.2302 -35.5767 REMARK 3 T TENSOR REMARK 3 T11: 0.2185 T22: 0.2439 REMARK 3 T33: 0.3175 T12: 0.0188 REMARK 3 T13: 0.0355 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 0.8551 L22: 0.5904 REMARK 3 L33: 0.3176 L12: 0.2017 REMARK 3 L13: 0.3085 L23: -0.2664 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0757 S13: 0.0018 REMARK 3 S21: -0.0281 S22: -0.0191 S23: -0.3764 REMARK 3 S31: -0.0020 S32: 0.0530 S33: 0.0235 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 320 THROUGH 452 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0171 -55.1269 -28.7961 REMARK 3 T TENSOR REMARK 3 T11: 0.1921 T22: 0.2027 REMARK 3 T33: 0.2334 T12: 0.0186 REMARK 3 T13: -0.0070 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.9046 L22: 1.8182 REMARK 3 L33: 0.6197 L12: -0.1187 REMARK 3 L13: 0.0840 L23: -0.2094 REMARK 3 S TENSOR REMARK 3 S11: -0.0310 S12: -0.1087 S13: -0.2787 REMARK 3 S21: 0.0624 S22: 0.0373 S23: -0.1158 REMARK 3 S31: 0.1048 S32: 0.0213 S33: -0.0043 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 453 THROUGH 480 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7396 -46.1806 -46.7428 REMARK 3 T TENSOR REMARK 3 T11: 0.3327 T22: 0.2773 REMARK 3 T33: 0.2400 T12: 0.0354 REMARK 3 T13: 0.0673 T23: -0.0491 REMARK 3 L TENSOR REMARK 3 L11: 3.1840 L22: 1.2646 REMARK 3 L33: 1.0288 L12: 0.5232 REMARK 3 L13: 0.1603 L23: -0.3273 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: 0.4625 S13: -0.2327 REMARK 3 S21: -0.5207 S22: 0.0074 S23: -0.2869 REMARK 3 S31: 0.0632 S32: 0.0891 S33: -0.0277 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 503 THROUGH 504 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3666 -43.1293 -29.9928 REMARK 3 T TENSOR REMARK 3 T11: 0.2940 T22: 0.3736 REMARK 3 T33: 0.3016 T12: 0.0483 REMARK 3 T13: 0.0112 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 1.6848 L22: 8.7117 REMARK 3 L33: 6.2615 L12: -0.3114 REMARK 3 L13: 0.2701 L23: -7.3854 REMARK 3 S TENSOR REMARK 3 S11: 0.0299 S12: 0.1765 S13: 0.2351 REMARK 3 S21: -0.1046 S22: -0.0609 S23: -0.0574 REMARK 3 S31: -0.2036 S32: 0.0850 S33: 0.0172 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102309 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.847 REMARK 200 RESOLUTION RANGE LOW (A) : 47.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.330 REMARK 200 R MERGE (I) : 0.17100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.02 REMARK 200 R MERGE FOR SHELL (I) : 1.62200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5M4G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM NABORATE, 690-760MM NACITRATE, PH REMARK 280 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.34950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 108.34950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.77850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.34600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.77850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.34600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 108.34950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.77850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.34600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 108.34950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.77850 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.34600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 921 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 484 REMARK 465 ALA A 485 REMARK 465 SER A 490 REMARK 465 GLY A 491 REMARK 465 PRO A 492 REMARK 465 LYS A 493 REMARK 465 ALA B 485 REMARK 465 PHE B 486 REMARK 465 THR B 487 REMARK 465 PRO B 488 REMARK 465 PHE B 489 REMARK 465 SER B 490 REMARK 465 GLY B 491 REMARK 465 PRO B 492 REMARK 465 LYS B 493 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CZ PHE A 489 O HOH B 1072 0.62 REMARK 500 SG CYS A 243 CE MET A 277 0.73 REMARK 500 CG PHE A 489 O HOH A 990 0.79 REMARK 500 CB CYS A 243 HE1 MET A 277 0.82 REMARK 500 CE1 PHE A 489 O HOH B 1072 0.82 REMARK 500 SG CYS A 243 HE2 MET A 277 0.86 REMARK 500 SG CYS A 243 HE3 MET A 277 0.90 REMARK 500 CD2 PHE A 489 O HOH A 990 0.93 REMARK 500 HB2 CYS A 243 HE1 MET A 277 1.19 REMARK 500 SG CYS A 243 HE1 MET A 277 1.25 REMARK 500 HB3 CYS A 243 HE1 MET A 277 1.28 REMARK 500 C GLY B 503 N PRO B 504 1.35 REMARK 500 C GLY A 504 N PRO A 505 1.35 REMARK 500 HG1 THR A 137 O HOH A 602 1.50 REMARK 500 OD1 ASP A 278 H ILE A 288 1.52 REMARK 500 HD2 HIS B 420 O HOH B 725 1.56 REMARK 500 H THR A 242 O HOH A 615 1.58 REMARK 500 CB CYS A 243 CE MET A 277 1.58 REMARK 500 H GLY A 43 OD2 ASP A 89 1.59 REMARK 500 CD1 PHE A 489 O HOH A 990 1.63 REMARK 500 CE2 PHE A 489 O HOH B 1072 1.76 REMARK 500 CE2 PHE A 489 O HOH A 990 1.80 REMARK 500 OE2 GLU A 131 O HOH A 601 1.82 REMARK 500 OG1 THR A 137 O HOH A 602 1.82 REMARK 500 O HOH A 948 O HOH A 1031 1.87 REMARK 500 O HOH A 603 O HOH A 609 1.92 REMARK 500 CD1 PHE A 489 O HOH B 1072 1.93 REMARK 500 NZ LYS A 168 O HOH A 603 1.94 REMARK 500 OE2 GLU B 473 O HOH B 601 1.97 REMARK 500 O HOH B 925 O HOH B 1060 1.98 REMARK 500 O HOH B 964 O HOH B 1031 2.02 REMARK 500 OE1 GLN A 55 O HOH A 604 2.04 REMARK 500 O HOH B 1009 O HOH B 1047 2.04 REMARK 500 O HOH B 1087 O HOH B 1142 2.05 REMARK 500 O HOH B 1032 O HOH B 1047 2.05 REMARK 500 O HOH A 848 O HOH A 929 2.07 REMARK 500 O HOH B 814 O HOH B 884 2.08 REMARK 500 O HOH B 937 O HOH B 1123 2.08 REMARK 500 O HOH B 1047 O HOH B 1089 2.09 REMARK 500 O HOH B 612 O HOH B 745 2.09 REMARK 500 O HOH A 874 O HOH A 974 2.09 REMARK 500 O HOH B 884 O HOH B 995 2.10 REMARK 500 O HOH B 906 O HOH B 933 2.10 REMARK 500 OD1 ASP A 276 O HOH A 605 2.11 REMARK 500 O HOH B 856 O HOH B 909 2.12 REMARK 500 O HOH B 1001 O HOH B 1119 2.12 REMARK 500 O HOH A 844 O HOH A 952 2.12 REMARK 500 OD1 ASP A 271 O HOH A 606 2.12 REMARK 500 O HOH B 779 O HOH B 1003 2.13 REMARK 500 O HOH B 612 O HOH B 738 2.13 REMARK 500 REMARK 500 THIS ENTRY HAS 74 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SG CYS B 482 SG CYS B 482 3554 1.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 213 CB VAL A 213 CG2 0.178 REMARK 500 ARG B 159 C ARG B 159 O -0.139 REMARK 500 GLU B 160 CD GLU B 160 OE1 -0.152 REMARK 500 GLU B 160 CD GLU B 160 OE2 -0.146 REMARK 500 GLU B 160 C GLU B 160 O -0.172 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 409 CA - CB - CG ANGL. DEV. = -16.6 DEGREES REMARK 500 GLU B 119 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 13 -129.32 52.02 REMARK 500 TYR A 57 -127.64 47.69 REMARK 500 HIS A 258 -178.47 -69.74 REMARK 500 PRO A 262 59.90 -91.62 REMARK 500 ARG A 470 -38.72 -132.30 REMARK 500 ASN B 13 -126.79 52.35 REMARK 500 TYR B 57 -127.20 50.92 REMARK 500 CYS B 245 77.56 -118.70 REMARK 500 ARG B 470 -39.05 -130.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 VAL A 213 10.04 REMARK 500 MET A 277 -15.43 REMARK 500 MET B 236 13.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1158 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B1159 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH B1160 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH B1161 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B1162 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH B1163 DISTANCE = 7.53 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLY A 504 REMARK 610 GLY B 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 276 OD2 REMARK 620 2 GLU A 412 OE1 108.6 REMARK 620 3 GLU A 452 OE1 94.6 92.9 REMARK 620 4 GLU A 452 OE2 137.9 73.7 44.0 REMARK 620 5 GLY A 504 O 121.1 92.9 139.5 100.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 287 OD2 REMARK 620 2 HIS A 370 NE2 91.6 REMARK 620 3 GLU A 412 OE2 159.3 78.8 REMARK 620 4 GLU A 452 OE2 85.6 115.6 82.3 REMARK 620 5 GLY A 504 O 99.5 84.9 97.9 158.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 502 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 276 OD2 REMARK 620 2 GLU B 412 OE1 115.3 REMARK 620 3 GLU B 452 OE1 93.3 89.5 REMARK 620 4 GLU B 452 OE2 137.1 70.6 43.9 REMARK 620 5 GLY B 503 O 120.9 96.6 137.5 99.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 501 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 287 OD2 REMARK 620 2 HIS B 370 NE2 94.7 REMARK 620 3 GLU B 412 OE2 162.8 80.7 REMARK 620 4 GLU B 452 OE2 90.3 122.0 78.4 REMARK 620 5 GLY B 503 O 99.5 82.7 96.4 152.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PRO B 504 DBREF 6SRF A 6 493 UNP P12955 PEPD_HUMAN 6 493 DBREF 6SRF B 6 493 UNP P12955 PEPD_HUMAN 6 493 SEQADV 6SRF ASP A 278 UNP P12955 GLY 278 ENGINEERED MUTATION SEQADV 6SRF ASP B 278 UNP P12955 GLY 278 ENGINEERED MUTATION SEQRES 1 A 488 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 A 488 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 A 488 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 A 488 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 A 488 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 A 488 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 A 488 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 A 488 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 A 488 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 A 488 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 A 488 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 A 488 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 A 488 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 A 488 ILE LEU HIS PRO GLU ILE VAL GLU CYS ARG VAL PHE LYS SEQRES 15 A 488 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 A 488 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 A 488 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 A 488 GLU HIS TYR CYS TYR SER ARG GLY GLY MET ARG HIS SER SEQRES 19 A 488 SER TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA SEQRES 20 A 488 VAL LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG SEQRES 21 A 488 THR ILE GLN ASN GLY ASP MET CYS LEU PHE ASP MET ASP SEQRES 22 A 488 GLY GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER SEQRES 23 A 488 PHE PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA SEQRES 24 A 488 VAL TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET SEQRES 25 A 488 GLY ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS SEQRES 26 A 488 ARG LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS SEQRES 27 A 488 MET GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN SEQRES 28 A 488 ALA HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY SEQRES 29 A 488 HIS PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR SEQRES 30 A 488 PRO GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SEQRES 31 A 488 SER LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL SEQRES 32 A 488 LEU THR VAL GLU PRO GLY ILE TYR PHE ILE ASP HIS LEU SEQRES 33 A 488 LEU ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE SEQRES 34 A 488 LEU ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY SEQRES 35 A 488 GLY VAL ARG ILE GLU GLU ASP VAL VAL VAL THR ASP SER SEQRES 36 A 488 GLY ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU SEQRES 37 A 488 GLU ILE GLU ALA CYS MET ALA GLY CYS ASP LYS ALA PHE SEQRES 38 A 488 THR PRO PHE SER GLY PRO LYS SEQRES 1 B 488 GLY PRO SER PHE TRP LEU GLY ASN GLU THR LEU LYS VAL SEQRES 2 B 488 PRO LEU ALA LEU PHE ALA LEU ASN ARG GLN ARG LEU CYS SEQRES 3 B 488 GLU ARG LEU ARG LYS ASN PRO ALA VAL GLN ALA GLY SER SEQRES 4 B 488 ILE VAL VAL LEU GLN GLY GLY GLU GLU THR GLN ARG TYR SEQRES 5 B 488 CYS THR ASP THR GLY VAL LEU PHE ARG GLN GLU SER PHE SEQRES 6 B 488 PHE HIS TRP ALA PHE GLY VAL THR GLU PRO GLY CYS TYR SEQRES 7 B 488 GLY VAL ILE ASP VAL ASP THR GLY LYS SER THR LEU PHE SEQRES 8 B 488 VAL PRO ARG LEU PRO ALA SER HIS ALA THR TRP MET GLY SEQRES 9 B 488 LYS ILE HIS SER LYS GLU HIS PHE LYS GLU LYS TYR ALA SEQRES 10 B 488 VAL ASP ASP VAL GLN TYR VAL ASP GLU ILE ALA SER VAL SEQRES 11 B 488 LEU THR SER GLN LYS PRO SER VAL LEU LEU THR LEU ARG SEQRES 12 B 488 GLY VAL ASN THR ASP SER GLY SER VAL CYS ARG GLU ALA SEQRES 13 B 488 SER PHE ASP GLY ILE SER LYS PHE GLU VAL ASN ASN THR SEQRES 14 B 488 ILE LEU HIS PRO GLU ILE VAL GLU CYS ARG VAL PHE LYS SEQRES 15 B 488 THR ASP MET GLU LEU GLU VAL LEU ARG TYR THR ASN LYS SEQRES 16 B 488 ILE SER SER GLU ALA HIS ARG GLU VAL MET LYS ALA VAL SEQRES 17 B 488 LYS VAL GLY MET LYS GLU TYR GLU LEU GLU SER LEU PHE SEQRES 18 B 488 GLU HIS TYR CYS TYR SER ARG GLY GLY MET ARG HIS SER SEQRES 19 B 488 SER TYR THR CYS ILE CYS GLY SER GLY GLU ASN SER ALA SEQRES 20 B 488 VAL LEU HIS TYR GLY HIS ALA GLY ALA PRO ASN ASP ARG SEQRES 21 B 488 THR ILE GLN ASN GLY ASP MET CYS LEU PHE ASP MET ASP SEQRES 22 B 488 GLY GLU TYR TYR CYS PHE ALA SER ASP ILE THR CYS SER SEQRES 23 B 488 PHE PRO ALA ASN GLY LYS PHE THR ALA ASP GLN LYS ALA SEQRES 24 B 488 VAL TYR GLU ALA VAL LEU ARG SER SER ARG ALA VAL MET SEQRES 25 B 488 GLY ALA MET LYS PRO GLY VAL TRP TRP PRO ASP MET HIS SEQRES 26 B 488 ARG LEU ALA ASP ARG ILE HIS LEU GLU GLU LEU ALA HIS SEQRES 27 B 488 MET GLY ILE LEU SER GLY SER VAL ASP ALA MET VAL GLN SEQRES 28 B 488 ALA HIS LEU GLY ALA VAL PHE MET PRO HIS GLY LEU GLY SEQRES 29 B 488 HIS PHE LEU GLY ILE ASP VAL HIS ASP VAL GLY GLY TYR SEQRES 30 B 488 PRO GLU GLY VAL GLU ARG ILE ASP GLU PRO GLY LEU ARG SEQRES 31 B 488 SER LEU ARG THR ALA ARG HIS LEU GLN PRO GLY MET VAL SEQRES 32 B 488 LEU THR VAL GLU PRO GLY ILE TYR PHE ILE ASP HIS LEU SEQRES 33 B 488 LEU ASP GLU ALA LEU ALA ASP PRO ALA ARG ALA SER PHE SEQRES 34 B 488 LEU ASN ARG GLU VAL LEU GLN ARG PHE ARG GLY PHE GLY SEQRES 35 B 488 GLY VAL ARG ILE GLU GLU ASP VAL VAL VAL THR ASP SER SEQRES 36 B 488 GLY ILE GLU LEU LEU THR CYS VAL PRO ARG THR VAL GLU SEQRES 37 B 488 GLU ILE GLU ALA CYS MET ALA GLY CYS ASP LYS ALA PHE SEQRES 38 B 488 THR PRO PHE SER GLY PRO LYS HET MN A 501 1 HET NA A 502 1 HET GOL A 503 14 HET GLY A 504 9 HET PRO A 505 15 HET MN B 501 1 HET NA B 502 1 HET GLY B 503 9 HET PRO B 504 15 HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM GLY GLYCINE HETNAM PRO PROLINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN 2(MN 2+) FORMUL 4 NA 2(NA 1+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 GLY 2(C2 H5 N O2) FORMUL 7 PRO 2(C5 H9 N O2) FORMUL 12 HOH *1034(H2 O) HELIX 1 AA1 LEU A 20 LYS A 36 1 17 HELIX 2 AA2 GLU A 68 GLY A 76 1 9 HELIX 3 AA3 SER A 103 MET A 108 1 6 HELIX 4 AA4 SER A 113 ALA A 122 1 10 HELIX 5 AA5 GLU A 131 GLN A 139 1 9 HELIX 6 AA6 GLY A 165 PHE A 169 5 5 HELIX 7 AA7 ILE A 175 PHE A 186 1 12 HELIX 8 AA8 THR A 188 VAL A 213 1 26 HELIX 9 AA9 LYS A 218 GLY A 235 1 18 HELIX 10 AB1 GLU A 249 VAL A 253 5 5 HELIX 11 AB2 THR A 299 MET A 320 1 22 HELIX 12 AB3 TRP A 325 MET A 344 1 20 HELIX 13 AB4 SER A 350 ALA A 357 1 8 HELIX 14 AB5 LEU A 359 MET A 364 1 6 HELIX 15 AB6 GLY A 393 LEU A 397 5 5 HELIX 16 AB7 ILE A 418 ASP A 428 1 11 HELIX 17 AB8 ASP A 428 SER A 433 1 6 HELIX 18 AB9 ASN A 436 GLN A 441 1 6 HELIX 19 AC1 ARG A 442 ARG A 444 5 3 HELIX 20 AC2 THR A 471 GLY A 481 1 11 HELIX 21 AC3 LEU B 20 LYS B 36 1 17 HELIX 22 AC4 GLU B 68 GLY B 76 1 9 HELIX 23 AC5 ALA B 102 MET B 108 1 7 HELIX 24 AC6 SER B 113 ALA B 122 1 10 HELIX 25 AC7 GLU B 131 LYS B 140 1 10 HELIX 26 AC8 GLY B 165 PHE B 169 5 5 HELIX 27 AC9 ILE B 175 PHE B 186 1 12 HELIX 28 AD1 THR B 188 VAL B 213 1 26 HELIX 29 AD2 LYS B 218 GLY B 235 1 18 HELIX 30 AD3 GLU B 249 VAL B 253 5 5 HELIX 31 AD4 THR B 299 MET B 320 1 22 HELIX 32 AD5 TRP B 325 MET B 344 1 20 HELIX 33 AD6 SER B 350 ALA B 357 1 8 HELIX 34 AD7 LEU B 359 MET B 364 1 6 HELIX 35 AD8 GLY B 393 LEU B 397 5 5 HELIX 36 AD9 ILE B 418 ALA B 427 1 10 HELIX 37 AE1 ASP B 428 SER B 433 1 6 HELIX 38 AE2 ASN B 436 GLN B 441 1 6 HELIX 39 AE3 ARG B 442 ARG B 444 5 3 HELIX 40 AE4 THR B 471 ALA B 480 1 10 SHEET 1 AA1 2 SER A 8 PHE A 9 0 SHEET 2 AA1 2 VAL A 18 PRO A 19 -1 O VAL A 18 N PHE A 9 SHEET 1 AA2 6 ASP A 125 TYR A 128 0 SHEET 2 AA2 6 SER A 93 VAL A 97 1 N VAL A 97 O GLN A 127 SHEET 3 AA2 6 TYR A 83 ASP A 87 -1 N TYR A 83 O PHE A 96 SHEET 4 AA2 6 ILE A 45 GLN A 49 -1 N LEU A 48 O GLY A 84 SHEET 5 AA2 6 LEU A 144 LEU A 145 1 O LEU A 145 N ILE A 45 SHEET 6 AA2 6 VAL A 171 ASN A 172 1 O ASN A 172 N LEU A 144 SHEET 1 AA3 2 THR A 54 GLN A 55 0 SHEET 2 AA3 2 GLY A 62 VAL A 63 -1 O VAL A 63 N THR A 54 SHEET 1 AA4 2 HIS A 238 SER A 239 0 SHEET 2 AA4 2 GLY A 279 GLU A 280 -1 O GLU A 280 N HIS A 238 SHEET 1 AA5 3 ILE A 244 SER A 247 0 SHEET 2 AA5 3 MET A 272 ASP A 276 -1 O ASP A 276 N ILE A 244 SHEET 3 AA5 3 THR A 289 PRO A 293 -1 O PHE A 292 N CYS A 273 SHEET 1 AA6 3 VAL A 408 VAL A 411 0 SHEET 2 AA6 3 GLU A 453 VAL A 457 -1 O GLU A 453 N VAL A 411 SHEET 3 AA6 3 ILE A 462 LEU A 464 -1 O GLU A 463 N VAL A 456 SHEET 1 AA7 2 GLY A 414 TYR A 416 0 SHEET 2 AA7 2 GLY A 448 ARG A 450 -1 O VAL A 449 N ILE A 415 SHEET 1 AA8 2 SER B 8 PHE B 9 0 SHEET 2 AA8 2 VAL B 18 PRO B 19 -1 O VAL B 18 N PHE B 9 SHEET 1 AA9 6 ASP B 125 TYR B 128 0 SHEET 2 AA9 6 SER B 93 VAL B 97 1 N VAL B 97 O GLN B 127 SHEET 3 AA9 6 TYR B 83 ASP B 87 -1 N TYR B 83 O PHE B 96 SHEET 4 AA9 6 SER B 44 GLN B 49 -1 N LEU B 48 O GLY B 84 SHEET 5 AA9 6 VAL B 143 LEU B 145 1 O LEU B 145 N ILE B 45 SHEET 6 AA9 6 VAL B 171 ASN B 172 1 O ASN B 172 N LEU B 144 SHEET 1 AB1 3 ILE B 244 SER B 247 0 SHEET 2 AB1 3 MET B 272 ASP B 276 -1 O ASP B 276 N ILE B 244 SHEET 3 AB1 3 THR B 289 PRO B 293 -1 O PHE B 292 N CYS B 273 SHEET 1 AB2 3 VAL B 408 VAL B 411 0 SHEET 2 AB2 3 GLU B 453 VAL B 457 -1 O VAL B 455 N LEU B 409 SHEET 3 AB2 3 ILE B 462 LEU B 464 -1 O GLU B 463 N VAL B 456 SHEET 1 AB3 2 GLY B 414 TYR B 416 0 SHEET 2 AB3 2 GLY B 448 ARG B 450 -1 O VAL B 449 N ILE B 415 SSBOND 1 CYS A 482 CYS A 482 1555 3554 2.03 LINK OD2 ASP A 276 NA NA A 502 1555 1555 2.65 LINK OD2 ASP A 287 MN MN A 501 1555 1555 2.01 LINK NE2 HIS A 370 MN MN A 501 1555 1555 2.30 LINK OE2 GLU A 412 MN MN A 501 1555 1555 2.39 LINK OE1 GLU A 412 NA NA A 502 1555 1555 2.64 LINK OE2 GLU A 452 MN MN A 501 1555 1555 2.44 LINK OE1 GLU A 452 NA NA A 502 1555 1555 2.80 LINK OE2 GLU A 452 NA NA A 502 1555 1555 3.07 LINK MN MN A 501 O GLY A 504 1555 1555 2.36 LINK NA NA A 502 O GLY A 504 1555 1555 3.08 LINK OD2 ASP B 276 NA NA B 502 1555 1555 2.68 LINK OD2 ASP B 287 MN MN B 501 1555 1555 1.94 LINK NE2 HIS B 370 MN MN B 501 1555 1555 2.29 LINK OE2 GLU B 412 MN MN B 501 1555 1555 2.37 LINK OE1 GLU B 412 NA NA B 502 1555 1555 2.45 LINK OE2 GLU B 452 MN MN B 501 1555 1555 2.25 LINK OE1 GLU B 452 NA NA B 502 1555 1555 2.77 LINK OE2 GLU B 452 NA NA B 502 1555 1555 3.03 LINK MN MN B 501 O GLY B 503 1555 1555 2.57 LINK NA NA B 502 O GLY B 503 1555 1555 3.13 SITE 1 AC1 6 ASP A 287 HIS A 370 GLU A 412 GLU A 452 SITE 2 AC1 6 NA A 502 GLY A 504 SITE 1 AC2 7 ASP A 276 ASP A 287 GLU A 412 GLU A 452 SITE 2 AC2 7 MN A 501 GLY A 504 PRO A 505 SITE 1 AC3 4 ARG A 388 HOH A 611 HOH A 742 HOH A 824 SITE 1 AC4 10 TYR A 241 ASP A 276 ASP A 287 HIS A 370 SITE 2 AC4 10 HIS A 377 GLU A 412 MN A 501 NA A 502 SITE 3 AC4 10 PRO A 505 HOH A 657 SITE 1 AC5 10 HIS A 255 HIS A 366 HIS A 377 ARG A 398 SITE 2 AC5 10 GLU A 412 ARG A 450 NA A 502 GLY A 504 SITE 3 AC5 10 HOH A 783 HOH A 785 SITE 1 AC6 6 ASP B 287 HIS B 370 GLU B 412 GLU B 452 SITE 2 AC6 6 NA B 502 GLY B 503 SITE 1 AC7 7 ASP B 276 ASP B 287 GLU B 412 GLU B 452 SITE 2 AC7 7 MN B 501 GLY B 503 PRO B 504 SITE 1 AC8 10 TYR B 241 ASP B 276 ASP B 287 HIS B 370 SITE 2 AC8 10 HIS B 377 GLU B 412 MN B 501 NA B 502 SITE 3 AC8 10 PRO B 504 HOH B 816 SITE 1 AC9 10 HIS B 255 HIS B 366 HIS B 377 ARG B 398 SITE 2 AC9 10 GLU B 412 ARG B 450 NA B 502 GLY B 503 SITE 3 AC9 10 HOH B 734 HOH B 759 CRYST1 103.557 106.692 216.699 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009657 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004615 0.00000