HEADER VIRAL PROTEIN 08-SEP-19 6SSJ TITLE HUMAN ENDOGENOUS RETROVIRUS (HML2) MATURE CAPSID ASSEMBLY, T=1 TITLE 2 ICOSAHEDRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 GAG POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HERV-K101 GAG PROTEIN,HERV-K_22Q11.21 PROVIRUS ANCESTRAL GAG COMPND 5 POLYPROTEIN,GAG POLYPROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERVK-24; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MATURE RETROVIRUS CAPSID ASSEMBLY, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR O.J.H.ACTON,I.A.TAYLOR,P.B.ROSENTHAL REVDAT 1 01-JAN-20 6SSJ 0 JRNL AUTH O.ACTON,T.GRANT,G.NICASTRO,N.J.BALL,D.C.GOLDSTONE, JRNL AUTH 2 L.E.ROBERTSON,K.SADER,A.NANS,A.RAMOS,J.P.STOYE,I.A.TAYLOR, JRNL AUTH 3 P.B.ROSENTHAL JRNL TITL STRUCTURAL BASIS FOR FULLERENE GEOMETRY IN A HUMAN JRNL TITL 2 ENDOGENOUS RETROVIRUS CAPSID. JRNL REF NAT COMMUN V. 10 5822 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31862888 JRNL DOI 10.1038/S41467-019-13786-Y REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, COOT, RELION, REMARK 3 RELION, RELION, CISTEM, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : MAP VS MODEL FSC REMARK 3 OVERALL ANISOTROPIC B VALUE : 90.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.750 REMARK 3 NUMBER OF PARTICLES : 64731 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6SSJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292103728. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN ENDOGENOUS RETROVIRUS REMARK 245 (HML2) MATURE CAPSID ASSEMBLY, REMARK 245 T=1 ICOSAHEDRON REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 16.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 10935 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 30.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 60-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.13.1_B41965. REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.501313 -0.808378 -0.308561 821.73350 REMARK 350 BIOMT2 2 -0.808378 0.310393 0.500181 314.07854 REMARK 350 BIOMT3 2 -0.308561 0.500181 -0.809079 505.22705 REMARK 350 BIOMT1 3 0.808963 0.307976 -0.500729 119.58886 REMARK 350 BIOMT2 3 -0.310144 -0.499999 -0.808586 822.41316 REMARK 350 BIOMT3 3 -0.499389 0.809414 -0.308964 311.25506 REMARK 350 BIOMT1 4 -0.308225 0.500978 0.808714 -0.53078 REMARK 350 BIOMT2 4 0.500791 0.808225 -0.309808 0.27533 REMARK 350 BIOMT3 4 -0.808830 0.309507 -0.500000 625.41581 REMARK 350 BIOMT1 5 0.501281 0.808431 0.308474 -194.63798 REMARK 350 BIOMT2 5 0.808319 -0.310298 -0.500335 315.58075 REMARK 350 BIOMT3 5 -0.308768 0.500154 -0.809017 505.28109 REMARK 350 BIOMT1 6 -0.809016 -0.307890 0.500696 507.48598 REMARK 350 BIOMT2 6 0.310049 0.500153 0.808528 -192.79069 REMARK 350 BIOMT3 6 -0.499362 0.809352 -0.309171 311.33072 REMARK 350 BIOMT1 7 0.308138 -0.500945 -0.808768 627.63909 REMARK 350 BIOMT2 7 -0.500945 -0.808166 0.309713 629.40675 REMARK 350 BIOMT3 7 -0.808768 0.309713 -0.499973 625.32262 REMARK 350 BIOMT1 8 0.498718 -0.809654 0.309420 315.26123 REMARK 350 BIOMT2 8 -0.809659 -0.307735 0.499751 509.20865 REMARK 350 BIOMT3 8 -0.309406 -0.499760 -0.809017 820.26537 REMARK 350 BIOMT1 9 0.809069 -0.309963 0.499329 1.23577 REMARK 350 BIOMT2 9 0.307985 -0.499999 -0.809411 628.86464 REMARK 350 BIOMT3 9 0.500552 0.808656 -0.309070 -1.99176 REMARK 350 BIOMT1 10 0.309017 -0.499511 0.809319 120.71680 REMARK 350 BIOMT2 10 0.500336 0.809075 0.308320 -193.22232 REMARK 350 BIOMT3 10 -0.808809 0.309655 0.499941 312.54543 REMARK 350 BIOMT1 11 0.000845 0.000148 1.000000 0.39050 REMARK 350 BIOMT2 11 0.999999 -0.000697 -0.000845 1.75782 REMARK 350 BIOMT3 11 0.000697 1.000000 -0.000148 -2.14774 REMARK 350 BIOMT1 12 -0.000845 -0.999999 0.000887 628.33620 REMARK 350 BIOMT2 12 -0.000041 0.000887 1.000000 1.70950 REMARK 350 BIOMT3 12 -1.000000 0.000845 -0.000042 626.12012 REMARK 350 BIOMT1 13 0.999999 -0.001584 -0.000106 0.53221 REMARK 350 BIOMT2 13 -0.001584 -0.999999 0.000000 630.11884 REMARK 350 BIOMT3 13 -0.000106 0.000000 -1.000000 625.70473 REMARK 350 BIOMT1 14 0.809069 0.307985 0.500552 -193.68367 REMARK 350 BIOMT2 14 -0.309963 -0.499999 0.808656 316.42554 REMARK 350 BIOMT3 14 0.499329 -0.809411 -0.309070 507.77725 REMARK 350 BIOMT1 15 -0.308931 -0.500303 0.808863 314.85884 REMARK 350 BIOMT2 15 0.499664 -0.809017 -0.309560 509.67692 REMARK 350 BIOMT3 15 0.809257 0.308527 0.499914 -194.41554 REMARK 350 BIOMT1 16 0.499967 -0.809224 -0.308528 508.05058 REMARK 350 BIOMT2 16 0.808863 0.309017 0.500249 -192.57534 REMARK 350 BIOMT3 16 -0.309473 -0.499665 0.809050 314.06752 REMARK 350 BIOMT1 17 -0.500000 -0.808810 0.309559 628.08752 REMARK 350 BIOMT2 17 0.809166 -0.308922 0.499818 1.99891 REMARK 350 BIOMT3 17 -0.308628 0.500394 0.808922 -0.98717 REMARK 350 BIOMT1 18 0.808963 -0.310144 -0.499389 313.76099 REMARK 350 BIOMT2 18 0.307976 -0.499999 0.809414 122.44101 REMARK 350 BIOMT3 18 -0.500729 -0.808586 -0.308964 821.04011 REMARK 350 BIOMT1 19 0.309894 0.499207 0.809171 -193.91969 REMARK 350 BIOMT2 19 0.499207 -0.809750 0.308379 316.73751 REMARK 350 BIOMT3 19 0.809171 0.308379 -0.500145 118.51216 REMARK 350 BIOMT1 20 0.000845 0.999999 0.000697 -1.75666 REMARK 350 BIOMT2 20 0.000148 -0.000697 1.000000 2.14891 REMARK 350 BIOMT3 20 1.000000 -0.000845 -0.000148 -0.38933 REMARK 350 BIOMT1 21 -1.000000 0.000000 0.000107 627.04165 REMARK 350 BIOMT2 21 0.000000 -1.000000 0.000190 629.56339 REMARK 350 BIOMT3 21 0.000107 0.000190 1.000000 -0.09317 REMARK 350 BIOMT1 22 0.000738 -0.000149 -1.000000 626.18844 REMARK 350 BIOMT2 22 0.999999 -0.000887 0.000739 1.32215 REMARK 350 BIOMT3 22 -0.000887 -1.000000 0.000148 627.87860 REMARK 350 BIOMT1 23 -0.309104 -0.500489 -0.808681 820.99713 REMARK 350 BIOMT2 23 0.499544 -0.809017 0.309755 315.97085 REMARK 350 BIOMT3 23 -0.809266 -0.308225 0.500086 507.15893 REMARK 350 BIOMT1 24 0.501281 0.808319 -0.308768 -1.50742 REMARK 350 BIOMT2 24 0.808431 -0.310298 0.500154 2.55699 REMARK 350 BIOMT3 24 0.308474 -0.500335 -0.809017 626.71790 REMARK 350 BIOMT1 25 -0.808474 0.309352 0.500671 313.00931 REMARK 350 BIOMT2 25 0.309352 -0.500336 0.808681 122.34512 REMARK 350 BIOMT3 25 0.500671 0.808681 0.308810 -195.33220 REMARK 350 BIOMT1 26 -0.809016 0.310049 -0.499362 625.80567 REMARK 350 BIOMT2 26 -0.307890 0.500153 0.809352 0.69838 REMARK 350 BIOMT3 26 0.500696 0.808528 -0.309171 -1.96544 REMARK 350 BIOMT1 27 -0.309104 0.499544 -0.809266 506.35816 REMARK 350 BIOMT2 27 -0.500489 -0.809017 -0.308225 822.84501 REMARK 350 BIOMT3 27 -0.808681 0.309755 0.500086 312.42846 REMARK 350 BIOMT1 28 -0.498751 0.809601 -0.309506 311.86787 REMARK 350 BIOMT2 28 0.809601 0.307641 -0.499904 120.51042 REMARK 350 BIOMT3 28 -0.309506 -0.499904 -0.808889 820.30243 REMARK 350 BIOMT1 29 0.309722 0.499021 -0.809352 312.52481 REMARK 350 BIOMT2 29 0.499021 -0.809867 -0.308374 509.77508 REMARK 350 BIOMT3 29 -0.809352 -0.308374 -0.499855 820.04992 REMARK 350 BIOMT1 30 -0.498685 0.809713 0.309319 118.22121 REMARK 350 BIOMT2 30 0.809713 0.307830 0.499606 -192.26692 REMARK 350 BIOMT3 30 0.309319 0.499606 -0.809145 311.70017 REMARK 350 BIOMT1 31 -0.809559 -0.308776 -0.499270 820.76057 REMARK 350 BIOMT2 31 -0.308776 -0.499357 0.809506 315.58533 REMARK 350 BIOMT3 31 -0.499270 0.809506 0.308917 117.89390 REMARK 350 BIOMT1 32 0.809506 0.308862 0.499303 -193.70635 REMARK 350 BIOMT2 32 0.308681 0.499511 -0.809447 314.00044 REMARK 350 BIOMT3 32 -0.499415 0.809378 0.309017 117.94813 REMARK 350 BIOMT1 33 -0.309808 -0.499054 0.809299 314.60427 REMARK 350 BIOMT2 33 -0.499175 0.809808 0.308279 119.94395 REMARK 350 BIOMT3 33 -0.809224 -0.308474 -0.500000 820.08680 REMARK 350 BIOMT1 34 0.498718 -0.809659 -0.309406 508.85366 REMARK 350 BIOMT2 34 -0.809654 -0.307735 -0.499760 821.88946 REMARK 350 BIOMT3 34 0.309420 0.499751 -0.809017 311.58311 REMARK 350 BIOMT1 35 -0.501248 -0.808373 0.308681 628.61587 REMARK 350 BIOMT2 35 -0.808373 0.310203 -0.500308 627.12533 REMARK 350 BIOMT3 35 0.308681 -0.500308 -0.808955 626.62504 REMARK 350 BIOMT1 36 0.808527 -0.309266 -0.500638 314.01151 REMARK 350 BIOMT2 36 -0.309257 0.500490 -0.808623 507.18120 REMARK 350 BIOMT3 36 0.500643 0.808619 0.309017 -195.36876 REMARK 350 BIOMT1 37 0.309017 0.500456 0.808735 -193.90141 REMARK 350 BIOMT2 37 -0.499697 0.808958 -0.309660 313.68880 REMARK 350 BIOMT3 37 -0.809204 -0.308432 0.500059 507.21324 REMARK 350 BIOMT1 38 0.000738 0.999999 -0.000887 -1.22781 REMARK 350 BIOMT2 38 -0.000149 -0.000887 -1.000000 627.97272 REMARK 350 BIOMT3 38 -1.000000 0.000739 0.000148 626.09425 REMARK 350 BIOMT1 39 -0.999999 0.001584 0.000000 626.57615 REMARK 350 BIOMT2 39 0.001584 0.999999 -0.000190 -0.43670 REMARK 350 BIOMT3 39 0.000000 -0.000190 -1.000000 625.73120 REMARK 350 BIOMT1 40 -0.000845 -0.000041 -1.000000 626.65092 REMARK 350 BIOMT2 40 -0.999999 0.000887 0.000845 627.80516 REMARK 350 BIOMT3 40 0.000887 1.000000 -0.000042 -2.24054 REMARK 350 BIOMT1 41 -0.309808 -0.499175 -0.809224 820.97397 REMARK 350 BIOMT2 41 -0.499054 0.809808 -0.308474 312.84836 REMARK 350 BIOMT3 41 0.809299 0.308279 -0.500000 118.45843 REMARK 350 BIOMT1 42 0.499967 0.808863 -0.309473 -1.04597 REMARK 350 BIOMT2 42 -0.809224 0.309017 -0.499665 627.56429 REMARK 350 BIOMT3 42 -0.308528 0.500249 0.809050 -1.01300 REMARK 350 BIOMT1 43 -0.809016 0.310058 0.499357 313.36819 REMARK 350 BIOMT2 43 -0.308071 0.499846 -0.809473 507.27820 REMARK 350 BIOMT3 43 -0.500585 -0.808714 -0.308863 821.00361 REMARK 350 BIOMT1 44 -0.808581 0.309171 -0.500610 626.33619 REMARK 350 BIOMT2 44 0.309171 -0.500643 -0.808561 628.42948 REMARK 350 BIOMT3 44 -0.500610 -0.808561 0.309224 627.60355 REMARK 350 BIOMT1 45 -0.308225 0.500791 -0.808830 505.55348 REMARK 350 BIOMT2 45 0.500978 0.808225 0.309507 -193.52694 REMARK 350 BIOMT3 45 0.808714 -0.309808 -0.500000 313.22244 REMARK 350 BIOMT1 46 -0.500000 0.809166 -0.308628 312.12153 REMARK 350 BIOMT2 46 -0.808810 -0.308922 0.500394 509.11478 REMARK 350 BIOMT3 46 0.309559 0.499818 0.808922 -194.63088 REMARK 350 BIOMT1 47 0.309017 0.500336 -0.808809 312.16208 REMARK 350 BIOMT2 47 -0.499511 0.809075 0.309655 119.84958 REMARK 350 BIOMT3 47 0.809319 0.308320 0.499941 -194.37841 REMARK 350 BIOMT1 48 -0.500000 0.809171 0.308614 119.02455 REMARK 350 BIOMT2 48 -0.808922 -0.309112 -0.500095 822.19833 REMARK 350 BIOMT3 48 -0.309266 -0.499692 0.809112 313.99196 REMARK 350 BIOMT1 49 -0.809016 -0.308071 -0.500585 820.77946 REMARK 350 BIOMT2 49 0.310058 0.499846 -0.808714 313.23422 REMARK 350 BIOMT3 49 0.499357 -0.809473 -0.308863 507.72348 REMARK 350 BIOMT1 50 -0.500000 -0.808922 -0.309266 821.71353 REMARK 350 BIOMT2 50 0.809171 -0.309112 -0.499692 314.73951 REMARK 350 BIOMT3 50 0.308614 -0.500095 0.809112 120.39023 REMARK 350 BIOMT1 51 0.809506 0.308681 -0.499415 118.78547 REMARK 350 BIOMT2 51 0.308862 0.499511 0.809378 -192.48264 REMARK 350 BIOMT3 51 0.499303 -0.809447 0.309017 314.43701 REMARK 350 BIOMT1 52 -0.308931 0.499664 0.809257 -0.06558 REMARK 350 BIOMT2 52 -0.500303 -0.809017 0.308527 629.84440 REMARK 350 BIOMT3 52 0.808863 -0.309560 0.499914 0.28898 REMARK 350 BIOMT1 53 0.500033 0.808868 0.309352 -194.65905 REMARK 350 BIOMT2 53 -0.809112 0.309017 0.499846 314.84674 REMARK 350 BIOMT3 53 0.308714 -0.500240 0.808984 120.44440 REMARK 350 BIOMT1 54 -0.809453 -0.308768 0.499448 508.28969 REMARK 350 BIOMT2 54 -0.308768 -0.499664 -0.809319 822.10570 REMARK 350 BIOMT3 54 0.499448 -0.809319 0.309117 314.31997 REMARK 350 BIOMT1 55 0.309017 -0.499697 -0.809204 627.10727 REMARK 350 BIOMT2 55 0.500456 0.808958 -0.308432 -0.28095 REMARK 350 BIOMT3 55 0.808735 -0.309660 0.500059 0.31534 REMARK 350 BIOMT1 56 0.500033 -0.809112 0.308714 314.89937 REMARK 350 BIOMT2 56 0.808868 0.309017 -0.500240 120.41167 REMARK 350 BIOMT3 56 0.309352 0.499846 0.808984 -194.59415 REMARK 350 BIOMT1 57 0.808527 -0.309257 0.500643 0.77237 REMARK 350 BIOMT2 57 -0.309266 0.500490 0.808619 1.25303 REMARK 350 BIOMT3 57 -0.500638 -0.808623 0.309017 627.69641 REMARK 350 BIOMT1 58 0.308311 -0.500824 0.808777 121.52156 REMARK 350 BIOMT2 58 -0.500824 -0.808283 -0.309601 823.14978 REMARK 350 BIOMT3 58 0.808777 -0.309601 -0.500027 313.14643 REMARK 350 BIOMT1 59 -0.000738 0.000042 1.000000 0.92015 REMARK 350 BIOMT2 59 -0.999999 0.000697 -0.000739 628.36040 REMARK 350 BIOMT3 59 -0.000697 -1.000000 0.000042 627.85243 REMARK 350 BIOMT1 60 -0.000738 -0.999999 -0.000697 628.79826 REMARK 350 BIOMT2 60 0.000042 0.000697 -1.000000 627.41440 REMARK 350 BIOMT3 60 1.000000 -0.000739 0.000042 -0.48228 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 7 REMARK 465 PRO A 8 REMARK 465 PRO A 9 REMARK 465 GLY A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 GLN A 14 REMARK 465 GLU A 15 REMARK 465 GLY A 16 REMARK 465 GLU A 17 REMARK 465 PRO A 18 REMARK 465 PRO A 19 REMARK 465 THR A 20 REMARK 465 ALA A 237 REMARK 465 MET A 238 REMARK 465 HIS A 239 REMARK 465 LYS A 240 REMARK 465 ALA A 241 REMARK 465 MET A 242 REMARK 465 LEU A 243 REMARK 465 MET A 244 REMARK 465 ALA A 245 REMARK 465 GLN A 246 REMARK 465 LEU A 247 REMARK 465 GLU A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 6 CG CD REMARK 470 VAL A 21 CG1 CG2 REMARK 470 GLU A 22 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 94 NH1 ARG A 97 1.23 REMARK 500 CD GLU A 94 NH1 ARG A 97 1.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 6 C - N - CA ANGL. DEV. = 11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 42 -66.14 -97.13 REMARK 500 ALA A 219 132.19 -171.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10296 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-10297 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-10298 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-10295 RELATED DB: EMDB REMARK 900 HUMAN ENDOGENOUS RETROVIRUS (HML2) MATURE CAPSID ASSEMBLY, T=1 REMARK 900 ICOSAHEDRON DBREF 6SSJ A 1 246 UNP P63145 GAK24_HUMAN 283 528 SEQADV 6SSJ HIS A 59 UNP P63145 TYR 341 ENGINEERED MUTATION SEQADV 6SSJ LEU A 247 UNP P63145 EXPRESSION TAG SEQADV 6SSJ GLU A 248 UNP P63145 EXPRESSION TAG SEQRES 1 A 248 PRO VAL THR LEU GLU PRO MET PRO PRO GLY GLU GLY ALA SEQRES 2 A 248 GLN GLU GLY GLU PRO PRO THR VAL GLU ALA ARG TYR LYS SEQRES 3 A 248 SER PHE SER ILE LYS MET LEU LYS ASP MET LYS GLU GLY SEQRES 4 A 248 VAL LYS GLN TYR GLY PRO ASN SER PRO TYR MET ARG THR SEQRES 5 A 248 LEU LEU ASP SER ILE ALA HIS GLY HIS ARG LEU ILE PRO SEQRES 6 A 248 TYR ASP TRP GLU ILE LEU ALA LYS SER SER LEU SER PRO SEQRES 7 A 248 SER GLN PHE LEU GLN PHE LYS THR TRP TRP ILE ASP GLY SEQRES 8 A 248 VAL GLN GLU GLN VAL ARG ARG ASN ARG ALA ALA ASN PRO SEQRES 9 A 248 PRO VAL ASN ILE ASP ALA ASP GLN LEU LEU GLY ILE GLY SEQRES 10 A 248 GLN ASN TRP SER THR ILE SER GLN GLN ALA LEU MET GLN SEQRES 11 A 248 ASN GLU ALA ILE GLU GLN VAL ARG ALA ILE CYS LEU ARG SEQRES 12 A 248 ALA TRP GLU LYS ILE GLN ASP PRO GLY SER ALA CYS PRO SEQRES 13 A 248 SER PHE ASN THR VAL ARG GLN GLY SER LYS GLU PRO TYR SEQRES 14 A 248 PRO ASP PHE VAL ALA ARG LEU GLN ASP VAL ALA GLN LYS SEQRES 15 A 248 SER ILE ALA ASP GLU LYS ALA ARG LYS VAL ILE VAL GLU SEQRES 16 A 248 LEU MET ALA TYR GLU ASN ALA ASN PRO GLU CYS GLN SER SEQRES 17 A 248 ALA ILE LYS PRO LEU LYS GLY LYS VAL PRO ALA GLY SER SEQRES 18 A 248 ASP VAL ILE SER GLU TYR VAL LYS ALA CYS ASP GLY ILE SEQRES 19 A 248 GLY GLY ALA MET HIS LYS ALA MET LEU MET ALA GLN LEU SEQRES 20 A 248 GLU HELIX 1 AA1 SER A 29 TYR A 43 1 15 HELIX 2 AA2 SER A 47 GLY A 60 1 14 HELIX 3 AA3 ILE A 64 LEU A 76 1 13 HELIX 4 AA4 SER A 77 ALA A 101 1 25 HELIX 5 AA5 ASP A 109 GLY A 115 1 7 HELIX 6 AA6 THR A 122 ALA A 127 1 6 HELIX 7 AA7 GLN A 130 TRP A 145 1 16 HELIX 8 AA8 GLU A 146 ILE A 148 5 3 HELIX 9 AA9 PRO A 168 ILE A 184 1 17 HELIX 10 AB1 ASP A 186 ASN A 201 1 16 HELIX 11 AB2 ASN A 203 LYS A 211 1 9 HELIX 12 AB3 PRO A 212 LYS A 214 5 3 HELIX 13 AB4 ASP A 222 ASP A 232 1 11 SHEET 1 AA1 2 VAL A 2 LEU A 4 0 SHEET 2 AA1 2 ALA A 23 TYR A 25 -1 O ARG A 24 N THR A 3 CISPEP 1 ASN A 103 PRO A 104 0 -12.75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000