HEADER VIRAL PROTEIN 08-SEP-19 6SSM TITLE HUMAN ENDOGENOUS RETROVIRUS (HML2) MATURE CAPSID ASSEMBLY, T=3 TITLE 2 ICOSAHEDRON COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 GAG POLYPROTEIN; COMPND 3 CHAIN: A, C, B; COMPND 4 SYNONYM: HERV-K101 GAG PROTEIN,HERV-K_22Q11.21 PROVIRUS ANCESTRAL GAG COMPND 5 POLYPROTEIN,GAG POLYPROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ERVK-24; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MATURE RETROVIRUS CAPSID ASSEMBLY, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR O.J.H.ACTON,I.A.TAYLOR,P.B.ROSENTHAL REVDAT 1 01-JAN-20 6SSM 0 JRNL AUTH O.ACTON,T.GRANT,G.NICASTRO,N.J.BALL,D.C.GOLDSTONE, JRNL AUTH 2 L.E.ROBERTSON,K.SADER,A.NANS,A.RAMOS,J.P.STOYE,I.A.TAYLOR, JRNL AUTH 3 P.B.ROSENTHAL JRNL TITL STRUCTURAL BASIS FOR FULLERENE GEOMETRY IN A HUMAN JRNL TITL 2 ENDOGENOUS RETROVIRUS CAPSID. JRNL REF NAT COMMUN V. 10 5822 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31862888 JRNL DOI 10.1038/S41467-019-13786-Y REMARK 2 REMARK 2 RESOLUTION. 4.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, CTFFIND, COOT, RELION, REMARK 3 RELION, RELION, CISTEM, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : OTHER REMARK 3 REFINEMENT TARGET : MAP VS MODEL FSC REMARK 3 OVERALL ANISOTROPIC B VALUE : 90.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.340 REMARK 3 NUMBER OF PARTICLES : 348 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6SSM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292103731. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN ENDOGENOUS RETROVIRUS REMARK 245 (HML2) MATURE CAPSID ASSEMBLY, REMARK 245 T=3 ICOSAHEDRON REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 16.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 10935 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 30.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 180-MERIC REMARK 350 SOFTWARE USED: UCSF CHIMERA 1.13.1_B41965. REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.308987 0.500024 -0.809013 313.37708 REMARK 350 BIOMT2 2 0.500024 -0.808994 -0.309038 507.04361 REMARK 350 BIOMT3 2 -0.809013 -0.309038 -0.499993 820.43176 REMARK 350 BIOMT1 3 0.000014 0.000010 -1.000000 626.74456 REMARK 350 BIOMT2 3 -1.000000 -0.000025 -0.000014 626.76501 REMARK 350 BIOMT3 3 -0.000025 1.000000 0.000010 0.00415 REMARK 350 BIOMT1 4 -0.309037 0.499979 -0.809022 507.06845 REMARK 350 BIOMT2 4 0.499976 0.809037 0.309003 -193.67161 REMARK 350 BIOMT3 4 0.809024 -0.308998 -0.500000 313.36597 REMARK 350 BIOMT1 5 -0.809017 0.308998 -0.500012 626.76348 REMARK 350 BIOMT2 5 -0.309041 0.499993 0.809012 0.01173 REMARK 350 BIOMT3 5 0.499985 0.809029 -0.309010 -0.00229 REMARK 350 BIOMT1 6 0.499967 0.809032 -0.309031 0.01094 REMARK 350 BIOMT2 6 0.809035 -0.308984 0.499991 -0.01390 REMARK 350 BIOMT3 6 0.309023 -0.499996 -0.809017 626.74751 REMARK 350 BIOMT1 7 0.309027 -0.499972 -0.809030 626.74409 REMARK 350 BIOMT2 7 -0.499972 -0.809040 0.309002 626.75528 REMARK 350 BIOMT3 7 -0.809030 0.309002 -0.499988 626.75703 REMARK 350 BIOMT1 8 -0.309027 -0.499988 -0.809021 820.43015 REMARK 350 BIOMT2 8 0.500015 -0.809017 0.308992 313.37797 REMARK 350 BIOMT3 8 -0.809004 -0.309036 0.500010 507.05205 REMARK 350 BIOMT1 9 -0.500000 0.809017 -0.309016 313.37713 REMARK 350 BIOMT2 9 -0.809019 -0.309021 0.499994 507.05792 REMARK 350 BIOMT3 9 0.309011 0.499996 0.809021 -193.67574 REMARK 350 BIOMT1 10 0.809005 0.309021 -0.500018 119.70758 REMARK 350 BIOMT2 10 0.309026 0.500012 0.809006 -193.67990 REMARK 350 BIOMT3 10 0.500015 -0.809008 0.309017 313.36723 REMARK 350 BIOMT1 11 -0.000014 1.000000 -0.000016 0.01070 REMARK 350 BIOMT2 11 0.000002 0.000016 1.000000 -0.00495 REMARK 350 BIOMT3 11 1.000000 0.000014 -0.000002 -0.00548 REMARK 350 BIOMT1 12 0.809011 -0.308993 -0.500024 313.37790 REMARK 350 BIOMT2 12 0.309050 -0.500000 0.809004 119.69214 REMARK 350 BIOMT3 12 -0.499989 -0.809026 -0.309011 820.42611 REMARK 350 BIOMT1 13 -0.809011 -0.309016 -0.500011 820.43146 REMARK 350 BIOMT2 13 -0.309016 -0.500020 0.809005 313.38570 REMARK 350 BIOMT3 13 -0.500011 0.809005 0.309030 119.70216 REMARK 350 BIOMT1 14 -0.500000 -0.809019 0.309011 626.75614 REMARK 350 BIOMT2 14 0.809018 -0.309021 0.499996 0.00139 REMARK 350 BIOMT3 14 -0.309016 0.499994 0.809021 0.00061 REMARK 350 BIOMT1 15 -0.309007 0.500005 0.809018 -0.00290 REMARK 350 BIOMT2 15 -0.499992 -0.809017 0.309031 626.74519 REMARK 350 BIOMT3 15 0.809026 -0.309009 0.499990 -0.00345 REMARK 350 BIOMT1 16 0.809029 -0.309018 0.499979 0.00358 REMARK 350 BIOMT2 16 -0.309004 0.499988 0.809030 -0.00377 REMARK 350 BIOMT3 16 -0.499988 -0.809024 0.309017 626.75039 REMARK 350 BIOMT1 17 0.809023 0.309036 0.499978 -193.67771 REMARK 350 BIOMT2 17 -0.308988 -0.500000 0.809028 313.36386 REMARK 350 BIOMT3 17 0.500008 -0.809010 -0.309023 507.04834 REMARK 350 BIOMT1 18 0.000014 -1.000000 -0.000025 626.75613 REMARK 350 BIOMT2 18 0.000010 -0.000025 1.000000 0.00491 REMARK 350 BIOMT3 18 -1.000000 -0.000014 0.000010 626.75366 REMARK 350 BIOMT1 19 -0.809023 0.309013 0.499992 313.38400 REMARK 350 BIOMT2 19 0.309013 -0.499995 0.809022 119.69677 REMARK 350 BIOMT3 19 0.499992 0.809022 0.309018 -193.67712 REMARK 350 BIOMT1 20 -0.000014 0.000002 1.000000 0.00556 REMARK 350 BIOMT2 20 1.000000 0.000016 0.000014 -0.01071 REMARK 350 BIOMT3 20 -0.000016 1.000000 -0.000002 0.00530 REMARK 350 BIOMT1 21 0.309047 -0.499983 0.809016 119.68563 REMARK 350 BIOMT2 21 -0.499982 -0.809035 -0.308999 820.42289 REMARK 350 BIOMT3 21 0.809017 -0.308998 -0.500012 313.37262 REMARK 350 BIOMT1 22 -0.308997 -0.500028 0.809007 313.38315 REMARK 350 BIOMT2 22 -0.500017 0.808997 0.309042 119.70358 REMARK 350 BIOMT3 22 -0.809014 -0.309025 -0.500000 820.43025 REMARK 350 BIOMT1 23 0.500033 -0.809005 0.308995 313.36900 REMARK 350 BIOMT2 23 -0.808996 -0.309050 0.500013 507.05340 REMARK 350 BIOMT3 23 -0.309018 -0.499999 -0.809017 820.42802 REMARK 350 BIOMT1 24 -0.809017 -0.309041 0.499985 507.06717 REMARK 350 BIOMT2 24 0.308998 0.499993 0.809029 -193.67234 REMARK 350 BIOMT3 24 -0.500012 0.809012 -0.309010 313.37870 REMARK 350 BIOMT1 25 0.309007 0.500021 0.809008 -193.67599 REMARK 350 BIOMT2 25 0.500021 -0.809000 0.309029 313.35935 REMARK 350 BIOMT3 25 0.809008 0.309029 -0.500007 119.69850 REMARK 350 BIOMT1 26 0.499967 0.809035 0.309023 -193.67296 REMARK 350 BIOMT2 26 0.809032 -0.308984 -0.499996 313.35844 REMARK 350 BIOMT3 26 -0.309031 0.499991 -0.809017 507.05973 REMARK 350 BIOMT1 27 0.500033 -0.808996 -0.309018 507.03692 REMARK 350 BIOMT2 27 -0.809005 -0.309050 -0.499999 820.43530 REMARK 350 BIOMT3 27 0.308995 0.500013 -0.809017 313.37709 REMARK 350 BIOMT1 28 -1.000000 -0.000040 0.000000 626.76685 REMARK 350 BIOMT2 28 -0.000040 1.000000 0.000009 0.00987 REMARK 350 BIOMT3 28 0.000000 0.000009 -1.000000 626.74814 REMARK 350 BIOMT1 29 -0.499971 -0.809029 -0.309032 820.42958 REMARK 350 BIOMT2 29 -0.809029 0.308980 0.500004 313.39137 REMARK 350 BIOMT3 29 -0.309033 0.500003 -0.809009 507.05377 REMARK 350 BIOMT1 30 -0.500029 0.809002 0.309009 119.71725 REMARK 350 BIOMT2 30 0.809002 0.309045 0.500006 -193.68396 REMARK 350 BIOMT3 30 0.309009 0.500006 -0.809016 313.37503 REMARK 350 BIOMT1 31 1.000000 0.000040 -0.000012 -0.00900 REMARK 350 BIOMT2 31 0.000040 -1.000000 0.000000 626.73895 REMARK 350 BIOMT3 31 -0.000012 0.000000 -1.000000 626.75445 REMARK 350 BIOMT1 32 0.309017 0.499995 -0.809020 313.37858 REMARK 350 BIOMT2 32 -0.500012 0.809014 0.309005 119.70814 REMARK 350 BIOMT3 32 0.809010 0.309032 0.500003 -193.68140 REMARK 350 BIOMT1 33 -0.000026 -0.000002 -1.000000 626.76106 REMARK 350 BIOMT2 33 1.000000 0.000025 -0.000026 -0.00094 REMARK 350 BIOMT3 33 0.000025 -1.000000 0.000002 626.74295 REMARK 350 BIOMT1 34 -0.309027 0.500015 -0.809004 507.04811 REMARK 350 BIOMT2 34 -0.499988 -0.809017 -0.309036 820.43126 REMARK 350 BIOMT3 34 -0.809021 0.308992 0.500010 313.38223 REMARK 350 BIOMT1 35 -0.809035 0.309008 -0.499976 626.75489 REMARK 350 BIOMT2 35 0.309008 -0.499980 -0.809032 626.75225 REMARK 350 BIOMT3 35 -0.499976 -0.809032 0.309016 626.74929 REMARK 350 BIOMT1 36 0.499996 0.809025 -0.309002 -0.00599 REMARK 350 BIOMT2 36 -0.809015 0.309017 -0.500003 626.75276 REMARK 350 BIOMT3 36 -0.309028 0.499986 0.809021 0.00672 REMARK 350 BIOMT1 37 0.309017 -0.500008 -0.809012 626.75318 REMARK 350 BIOMT2 37 0.499985 0.809020 -0.309035 0.00903 REMARK 350 BIOMT3 37 0.809027 -0.308996 0.499997 -0.00983 REMARK 350 BIOMT1 38 -0.308997 -0.500017 -0.809014 820.42784 REMARK 350 BIOMT2 38 -0.500028 0.808997 -0.309025 313.39380 REMARK 350 BIOMT3 38 0.809007 0.309042 -0.500000 119.69239 REMARK 350 BIOMT1 39 -0.500036 0.808999 -0.309005 313.39071 REMARK 350 BIOMT2 39 0.808999 0.309054 -0.500006 119.69349 REMARK 350 BIOMT3 39 -0.309005 -0.500006 -0.809018 820.42648 REMARK 350 BIOMT1 40 0.809011 0.309050 -0.499989 119.68666 REMARK 350 BIOMT2 40 -0.308993 -0.500000 -0.809026 820.42398 REMARK 350 BIOMT3 40 -0.500024 0.809004 -0.309011 313.38566 REMARK 350 BIOMT1 41 -0.000026 1.000000 0.000025 0.00185 REMARK 350 BIOMT2 41 -0.000002 0.000025 -1.000000 626.74387 REMARK 350 BIOMT3 41 -1.000000 -0.000026 0.000002 626.76012 REMARK 350 BIOMT1 42 0.809029 -0.309004 -0.499988 313.36403 REMARK 350 BIOMT2 42 -0.309018 0.499988 -0.809024 507.05905 REMARK 350 BIOMT3 42 0.499979 0.809030 0.309017 -193.67534 REMARK 350 BIOMT1 43 -0.809017 -0.309046 -0.499982 820.43389 REMARK 350 BIOMT2 43 0.308984 0.500007 -0.809025 313.38592 REMARK 350 BIOMT3 43 0.500021 -0.809002 -0.309024 507.04253 REMARK 350 BIOMT1 44 -0.499964 -0.809038 0.309022 626.74703 REMARK 350 BIOMT2 44 -0.809038 0.308989 -0.499984 626.76254 REMARK 350 BIOMT3 44 0.309022 -0.499984 -0.809025 626.74680 REMARK 350 BIOMT1 45 -0.309037 0.499976 0.809024 0.01361 REMARK 350 BIOMT2 45 0.499979 0.809037 -0.308998 -0.00666 REMARK 350 BIOMT3 45 -0.809022 0.309003 -0.500000 626.75810 REMARK 350 BIOMT1 46 0.809023 -0.308988 0.500008 -0.01321 REMARK 350 BIOMT2 46 0.309036 -0.500000 -0.809010 626.74233 REMARK 350 BIOMT3 46 0.499978 0.809028 -0.309023 0.00399 REMARK 350 BIOMT1 47 0.809005 0.309026 0.500015 -193.67968 REMARK 350 BIOMT2 47 0.309021 0.500012 -0.809008 313.36719 REMARK 350 BIOMT3 47 -0.500018 0.809006 0.309017 119.70834 REMARK 350 BIOMT1 48 0.000026 -1.000000 0.000016 626.73968 REMARK 350 BIOMT2 48 -0.000010 -0.000016 -1.000000 626.75918 REMARK 350 BIOMT3 48 1.000000 0.000026 -0.000010 -0.00649 REMARK 350 BIOMT1 49 -0.809017 0.308984 0.500021 313.38221 REMARK 350 BIOMT2 49 -0.309046 0.500007 -0.809002 507.05493 REMARK 350 BIOMT3 49 -0.499982 -0.809025 -0.309024 820.42781 REMARK 350 BIOMT1 50 0.000026 -0.000010 1.000000 -0.00321 REMARK 350 BIOMT2 50 -1.000000 -0.000017 0.000026 626.74981 REMARK 350 BIOMT3 50 0.000017 -1.000000 -0.000010 626.74916 REMARK 350 BIOMT1 51 0.309017 -0.500012 0.809010 119.70585 REMARK 350 BIOMT2 51 0.499995 0.809014 0.309032 -193.67978 REMARK 350 BIOMT3 51 -0.809020 0.309005 0.500003 313.38040 REMARK 350 BIOMT1 52 -0.309007 -0.499992 0.809026 313.36953 REMARK 350 BIOMT2 52 0.500005 -0.809017 -0.309009 507.04806 REMARK 350 BIOMT3 52 0.809018 0.309031 0.499990 -193.67972 REMARK 350 BIOMT1 53 0.500004 -0.809011 0.309025 313.37087 REMARK 350 BIOMT2 53 0.809016 0.309017 -0.500001 119.69793 REMARK 350 BIOMT3 53 0.309012 0.500009 0.809013 -193.67724 REMARK 350 BIOMT1 54 -0.808999 -0.309030 0.500022 507.04679 REMARK 350 BIOMT2 54 -0.309030 -0.500005 -0.809009 820.43159 REMARK 350 BIOMT3 54 0.500022 -0.809009 0.309004 313.36941 REMARK 350 BIOMT1 55 0.309017 0.499985 0.809027 -193.67361 REMARK 350 BIOMT2 55 -0.500008 0.809020 -0.308996 313.37168 REMARK 350 BIOMT3 55 -0.809012 -0.309035 0.499997 507.05837 REMARK 350 BIOMT1 56 0.500004 0.809016 0.309012 -193.67566 REMARK 350 BIOMT2 56 -0.809011 0.309017 0.500009 313.37272 REMARK 350 BIOMT3 56 0.309025 -0.500001 0.809013 119.69727 REMARK 350 BIOMT1 57 0.499996 -0.809015 -0.309029 507.05727 REMARK 350 BIOMT2 57 0.809025 0.309017 0.499987 -193.67605 REMARK 350 BIOMT3 57 -0.309001 -0.500004 0.809021 313.37126 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000012 626.75027 REMARK 350 BIOMT2 58 0.000000 -1.000000 -0.000009 626.75408 REMARK 350 BIOMT3 58 0.000012 -0.000009 1.000000 -0.00113 REMARK 350 BIOMT1 59 -0.500000 -0.809023 -0.309003 820.42727 REMARK 350 BIOMT2 59 0.809009 -0.309013 -0.500016 313.38055 REMARK 350 BIOMT3 59 0.309038 -0.499994 0.809013 119.69093 REMARK 350 BIOMT1 60 -0.500000 0.809009 0.309039 119.69677 REMARK 350 BIOMT2 60 -0.809022 -0.309012 -0.499994 820.42758 REMARK 350 BIOMT3 60 -0.309003 -0.500016 0.809012 313.37814 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 5 REMARK 465 PRO A 6 REMARK 465 MET A 7 REMARK 465 PRO A 8 REMARK 465 PRO A 9 REMARK 465 GLY A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 GLN A 14 REMARK 465 GLU A 15 REMARK 465 GLY A 16 REMARK 465 GLU A 17 REMARK 465 PRO A 18 REMARK 465 PRO A 19 REMARK 465 THR A 20 REMARK 465 VAL A 21 REMARK 465 GLU A 22 REMARK 465 ALA A 237 REMARK 465 MET A 238 REMARK 465 HIS A 239 REMARK 465 LYS A 240 REMARK 465 ALA A 241 REMARK 465 MET A 242 REMARK 465 LEU A 243 REMARK 465 MET A 244 REMARK 465 ALA A 245 REMARK 465 GLN A 246 REMARK 465 LEU A 247 REMARK 465 GLU A 248 REMARK 465 GLU C 5 REMARK 465 PRO C 6 REMARK 465 MET C 7 REMARK 465 PRO C 8 REMARK 465 PRO C 9 REMARK 465 GLY C 10 REMARK 465 GLU C 11 REMARK 465 GLY C 12 REMARK 465 ALA C 13 REMARK 465 GLN C 14 REMARK 465 GLU C 15 REMARK 465 GLY C 16 REMARK 465 GLU C 17 REMARK 465 PRO C 18 REMARK 465 PRO C 19 REMARK 465 THR C 20 REMARK 465 VAL C 21 REMARK 465 GLU C 22 REMARK 465 ALA C 237 REMARK 465 MET C 238 REMARK 465 HIS C 239 REMARK 465 LYS C 240 REMARK 465 ALA C 241 REMARK 465 MET C 242 REMARK 465 LEU C 243 REMARK 465 MET C 244 REMARK 465 ALA C 245 REMARK 465 GLN C 246 REMARK 465 LEU C 247 REMARK 465 GLU C 248 REMARK 465 GLU B 5 REMARK 465 PRO B 6 REMARK 465 MET B 7 REMARK 465 PRO B 8 REMARK 465 PRO B 9 REMARK 465 GLY B 10 REMARK 465 GLU B 11 REMARK 465 GLY B 12 REMARK 465 ALA B 13 REMARK 465 GLN B 14 REMARK 465 GLU B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 17 REMARK 465 PRO B 18 REMARK 465 PRO B 19 REMARK 465 THR B 20 REMARK 465 VAL B 21 REMARK 465 GLU B 22 REMARK 465 ALA B 237 REMARK 465 MET B 238 REMARK 465 HIS B 239 REMARK 465 LYS B 240 REMARK 465 ALA B 241 REMARK 465 MET B 242 REMARK 465 LEU B 243 REMARK 465 MET B 244 REMARK 465 ALA B 245 REMARK 465 GLN B 246 REMARK 465 LEU B 247 REMARK 465 GLU B 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 154 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 75 -37.02 -130.70 REMARK 500 LYS A 147 35.41 -94.56 REMARK 500 ASN A 159 30.52 -90.37 REMARK 500 LYS A 166 25.43 48.25 REMARK 500 CYS A 231 41.76 -103.44 REMARK 500 LEU C 128 34.09 -98.53 REMARK 500 LYS C 166 26.22 47.26 REMARK 500 ALA C 219 112.00 -165.91 REMARK 500 TYR B 43 -33.13 -130.23 REMARK 500 ASN B 107 76.00 -104.45 REMARK 500 ASP B 109 -166.84 -100.81 REMARK 500 ALA B 219 117.66 -167.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10295 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-10296 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-10297 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-10298 RELATED DB: EMDB REMARK 900 HUMAN ENDOGENOUS RETROVIRUS (HML2) MATURE CAPSID ASSEMBLY, T=3 REMARK 900 ICOSAHEDRON DBREF 6SSM A 1 246 UNP P63145 GAK24_HUMAN 283 528 DBREF 6SSM C 1 246 UNP P63145 GAK24_HUMAN 283 528 DBREF 6SSM B 1 246 UNP P63145 GAK24_HUMAN 283 528 SEQADV 6SSM HIS A 59 UNP P63145 TYR 341 ENGINEERED MUTATION SEQADV 6SSM LEU A 247 UNP P63145 EXPRESSION TAG SEQADV 6SSM GLU A 248 UNP P63145 EXPRESSION TAG SEQADV 6SSM HIS C 59 UNP P63145 TYR 341 ENGINEERED MUTATION SEQADV 6SSM LEU C 247 UNP P63145 EXPRESSION TAG SEQADV 6SSM GLU C 248 UNP P63145 EXPRESSION TAG SEQADV 6SSM HIS B 59 UNP P63145 TYR 341 ENGINEERED MUTATION SEQADV 6SSM LEU B 247 UNP P63145 EXPRESSION TAG SEQADV 6SSM GLU B 248 UNP P63145 EXPRESSION TAG SEQRES 1 A 248 PRO VAL THR LEU GLU PRO MET PRO PRO GLY GLU GLY ALA SEQRES 2 A 248 GLN GLU GLY GLU PRO PRO THR VAL GLU ALA ARG TYR LYS SEQRES 3 A 248 SER PHE SER ILE LYS MET LEU LYS ASP MET LYS GLU GLY SEQRES 4 A 248 VAL LYS GLN TYR GLY PRO ASN SER PRO TYR MET ARG THR SEQRES 5 A 248 LEU LEU ASP SER ILE ALA HIS GLY HIS ARG LEU ILE PRO SEQRES 6 A 248 TYR ASP TRP GLU ILE LEU ALA LYS SER SER LEU SER PRO SEQRES 7 A 248 SER GLN PHE LEU GLN PHE LYS THR TRP TRP ILE ASP GLY SEQRES 8 A 248 VAL GLN GLU GLN VAL ARG ARG ASN ARG ALA ALA ASN PRO SEQRES 9 A 248 PRO VAL ASN ILE ASP ALA ASP GLN LEU LEU GLY ILE GLY SEQRES 10 A 248 GLN ASN TRP SER THR ILE SER GLN GLN ALA LEU MET GLN SEQRES 11 A 248 ASN GLU ALA ILE GLU GLN VAL ARG ALA ILE CYS LEU ARG SEQRES 12 A 248 ALA TRP GLU LYS ILE GLN ASP PRO GLY SER ALA CYS PRO SEQRES 13 A 248 SER PHE ASN THR VAL ARG GLN GLY SER LYS GLU PRO TYR SEQRES 14 A 248 PRO ASP PHE VAL ALA ARG LEU GLN ASP VAL ALA GLN LYS SEQRES 15 A 248 SER ILE ALA ASP GLU LYS ALA ARG LYS VAL ILE VAL GLU SEQRES 16 A 248 LEU MET ALA TYR GLU ASN ALA ASN PRO GLU CYS GLN SER SEQRES 17 A 248 ALA ILE LYS PRO LEU LYS GLY LYS VAL PRO ALA GLY SER SEQRES 18 A 248 ASP VAL ILE SER GLU TYR VAL LYS ALA CYS ASP GLY ILE SEQRES 19 A 248 GLY GLY ALA MET HIS LYS ALA MET LEU MET ALA GLN LEU SEQRES 20 A 248 GLU SEQRES 1 C 248 PRO VAL THR LEU GLU PRO MET PRO PRO GLY GLU GLY ALA SEQRES 2 C 248 GLN GLU GLY GLU PRO PRO THR VAL GLU ALA ARG TYR LYS SEQRES 3 C 248 SER PHE SER ILE LYS MET LEU LYS ASP MET LYS GLU GLY SEQRES 4 C 248 VAL LYS GLN TYR GLY PRO ASN SER PRO TYR MET ARG THR SEQRES 5 C 248 LEU LEU ASP SER ILE ALA HIS GLY HIS ARG LEU ILE PRO SEQRES 6 C 248 TYR ASP TRP GLU ILE LEU ALA LYS SER SER LEU SER PRO SEQRES 7 C 248 SER GLN PHE LEU GLN PHE LYS THR TRP TRP ILE ASP GLY SEQRES 8 C 248 VAL GLN GLU GLN VAL ARG ARG ASN ARG ALA ALA ASN PRO SEQRES 9 C 248 PRO VAL ASN ILE ASP ALA ASP GLN LEU LEU GLY ILE GLY SEQRES 10 C 248 GLN ASN TRP SER THR ILE SER GLN GLN ALA LEU MET GLN SEQRES 11 C 248 ASN GLU ALA ILE GLU GLN VAL ARG ALA ILE CYS LEU ARG SEQRES 12 C 248 ALA TRP GLU LYS ILE GLN ASP PRO GLY SER ALA CYS PRO SEQRES 13 C 248 SER PHE ASN THR VAL ARG GLN GLY SER LYS GLU PRO TYR SEQRES 14 C 248 PRO ASP PHE VAL ALA ARG LEU GLN ASP VAL ALA GLN LYS SEQRES 15 C 248 SER ILE ALA ASP GLU LYS ALA ARG LYS VAL ILE VAL GLU SEQRES 16 C 248 LEU MET ALA TYR GLU ASN ALA ASN PRO GLU CYS GLN SER SEQRES 17 C 248 ALA ILE LYS PRO LEU LYS GLY LYS VAL PRO ALA GLY SER SEQRES 18 C 248 ASP VAL ILE SER GLU TYR VAL LYS ALA CYS ASP GLY ILE SEQRES 19 C 248 GLY GLY ALA MET HIS LYS ALA MET LEU MET ALA GLN LEU SEQRES 20 C 248 GLU SEQRES 1 B 248 PRO VAL THR LEU GLU PRO MET PRO PRO GLY GLU GLY ALA SEQRES 2 B 248 GLN GLU GLY GLU PRO PRO THR VAL GLU ALA ARG TYR LYS SEQRES 3 B 248 SER PHE SER ILE LYS MET LEU LYS ASP MET LYS GLU GLY SEQRES 4 B 248 VAL LYS GLN TYR GLY PRO ASN SER PRO TYR MET ARG THR SEQRES 5 B 248 LEU LEU ASP SER ILE ALA HIS GLY HIS ARG LEU ILE PRO SEQRES 6 B 248 TYR ASP TRP GLU ILE LEU ALA LYS SER SER LEU SER PRO SEQRES 7 B 248 SER GLN PHE LEU GLN PHE LYS THR TRP TRP ILE ASP GLY SEQRES 8 B 248 VAL GLN GLU GLN VAL ARG ARG ASN ARG ALA ALA ASN PRO SEQRES 9 B 248 PRO VAL ASN ILE ASP ALA ASP GLN LEU LEU GLY ILE GLY SEQRES 10 B 248 GLN ASN TRP SER THR ILE SER GLN GLN ALA LEU MET GLN SEQRES 11 B 248 ASN GLU ALA ILE GLU GLN VAL ARG ALA ILE CYS LEU ARG SEQRES 12 B 248 ALA TRP GLU LYS ILE GLN ASP PRO GLY SER ALA CYS PRO SEQRES 13 B 248 SER PHE ASN THR VAL ARG GLN GLY SER LYS GLU PRO TYR SEQRES 14 B 248 PRO ASP PHE VAL ALA ARG LEU GLN ASP VAL ALA GLN LYS SEQRES 15 B 248 SER ILE ALA ASP GLU LYS ALA ARG LYS VAL ILE VAL GLU SEQRES 16 B 248 LEU MET ALA TYR GLU ASN ALA ASN PRO GLU CYS GLN SER SEQRES 17 B 248 ALA ILE LYS PRO LEU LYS GLY LYS VAL PRO ALA GLY SER SEQRES 18 B 248 ASP VAL ILE SER GLU TYR VAL LYS ALA CYS ASP GLY ILE SEQRES 19 B 248 GLY GLY ALA MET HIS LYS ALA MET LEU MET ALA GLN LEU SEQRES 20 B 248 GLU HELIX 1 AA1 SER A 29 GLY A 44 1 16 HELIX 2 AA2 SER A 47 GLY A 60 1 14 HELIX 3 AA3 ILE A 64 SER A 74 1 11 HELIX 4 AA4 SER A 77 ALA A 101 1 25 HELIX 5 AA5 ALA A 110 GLY A 115 1 6 HELIX 6 AA6 SER A 124 MET A 129 5 6 HELIX 7 AA7 GLN A 130 LYS A 147 1 18 HELIX 8 AA8 SER A 157 VAL A 161 5 5 HELIX 9 AA9 PRO A 168 VAL A 179 1 12 HELIX 10 AB1 ALA A 180 LYS A 182 5 3 HELIX 11 AB2 ASP A 186 ALA A 202 1 17 HELIX 12 AB3 ASN A 203 SER A 208 1 6 HELIX 13 AB4 ALA A 209 LYS A 211 5 3 HELIX 14 AB5 ASP A 222 LYS A 229 1 8 HELIX 15 AB6 SER C 29 GLY C 44 1 16 HELIX 16 AB7 SER C 47 HIS C 61 1 15 HELIX 17 AB8 ILE C 64 SER C 74 1 11 HELIX 18 AB9 SER C 77 ALA C 101 1 25 HELIX 19 AC1 ASP C 109 GLY C 115 1 7 HELIX 20 AC2 THR C 122 ALA C 127 1 6 HELIX 21 AC3 GLN C 130 GLU C 146 1 17 HELIX 22 AC4 TYR C 169 SER C 183 1 15 HELIX 23 AC5 LYS C 188 ILE C 193 1 6 HELIX 24 AC6 ILE C 193 TYR C 199 1 7 HELIX 25 AC7 ASN C 203 LYS C 211 1 9 HELIX 26 AC8 ASP C 222 CYS C 231 1 10 HELIX 27 AC9 ILE B 30 TYR B 43 1 14 HELIX 28 AD1 SER B 47 HIS B 61 1 15 HELIX 29 AD2 ILE B 64 SER B 74 1 11 HELIX 30 AD3 SER B 77 ALA B 101 1 25 HELIX 31 AD4 ASP B 109 GLY B 115 1 7 HELIX 32 AD5 THR B 122 ALA B 127 1 6 HELIX 33 AD6 GLN B 130 LYS B 147 1 18 HELIX 34 AD7 VAL B 173 ILE B 184 1 12 HELIX 35 AD8 ASP B 186 VAL B 194 1 9 HELIX 36 AD9 VAL B 194 TYR B 199 1 6 HELIX 37 AE1 ASN B 203 LYS B 211 1 9 HELIX 38 AE2 PRO B 212 LYS B 214 5 3 HELIX 39 AE3 ASP B 222 CYS B 231 1 10 SSBOND 1 CYS C 206 CYS C 231 1555 1555 2.04 CISPEP 1 ASN A 103 PRO A 104 0 -3.45 CISPEP 2 ASN C 103 PRO C 104 0 -0.57 CISPEP 3 ASN B 103 PRO B 104 0 3.74 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000