HEADER VIRAL PROTEIN 11-SEP-19 6STV TITLE ADENOVIRUS 29 FIBER KNOB PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS 29; SOURCE 3 ORGANISM_TAXID: 46931; SOURCE 4 GENE: L5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENOVIRUS, TYPE 29, 3D STRUCTURE, FIBER KNOB, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.M.MUNDY,A.T.BAKER,P.J.RIZKALLAH,A.L.PARKER REVDAT 3 11-OCT-23 6STV 1 JRNL REVDAT 2 20-SEP-23 6STV 1 JRNL REVDAT 1 31-MAR-21 6STV 0 JRNL AUTH R.M.MUNDY,A.T.BAKER,E.A.BATES,T.G.CUNLIFFE, JRNL AUTH 2 A.TEIJEIRA-CRESPO,E.MOSES,P.J.RIZKALLAH,A.L.PARKER JRNL TITL BROAD SIALIC ACID USAGE AMONGST SPECIES D HUMAN ADENOVIRUS JRNL REF NPJ VIRUSES V. 1 1 2023 JRNL DOI 10.1038/S44298-023-00001-5 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47543 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2470 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3515 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 333 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.075 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.533 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2977 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2710 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4057 ; 1.699 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6340 ; 1.403 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 364 ; 8.320 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;38.904 ;25.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;14.046 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;22.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3296 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 572 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1689 -17.7779 37.8835 REMARK 3 T TENSOR REMARK 3 T11: 0.0337 T22: 0.0074 REMARK 3 T33: 0.0697 T12: -0.0092 REMARK 3 T13: 0.0365 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 2.6748 L22: 2.0272 REMARK 3 L33: 1.8060 L12: 0.9985 REMARK 3 L13: 0.6685 L23: 0.4569 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: -0.1210 S13: 0.1806 REMARK 3 S21: 0.1485 S22: -0.0942 S23: 0.3578 REMARK 3 S31: -0.1436 S32: -0.0103 S33: 0.0238 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 184 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7794 -19.1671 66.4069 REMARK 3 T TENSOR REMARK 3 T11: 0.0067 T22: 0.0334 REMARK 3 T33: 0.0707 T12: -0.0091 REMARK 3 T13: -0.0172 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 1.9542 L22: 2.5961 REMARK 3 L33: 1.7416 L12: 0.9839 REMARK 3 L13: 0.4025 L23: 0.6174 REMARK 3 S TENSOR REMARK 3 S11: -0.0900 S12: 0.1474 S13: 0.3532 REMARK 3 S21: -0.1137 S22: 0.0710 S23: 0.1778 REMARK 3 S31: -0.0114 S32: -0.1410 S33: 0.0190 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6STV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292103400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 500K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50042 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 73.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 22.60 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.50 REMARK 200 R MERGE FOR SHELL (I) : 3.60300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SPG, 25% W/V PEG 1500, PH 6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 -1.000000 104.29000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 104.29000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 -104.29000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 104.29000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 A 401 LIES ON A SPECIAL POSITION. REMARK 375 O4 PO4 A 401 LIES ON A SPECIAL POSITION. REMARK 375 P PO4 B 401 LIES ON A SPECIAL POSITION. REMARK 375 O4 PO4 B 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 654 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 654 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 278 REMARK 465 ILE A 279 REMARK 465 LEU A 280 REMARK 465 PRO A 281 REMARK 465 GLU A 282 REMARK 465 PRO A 283 REMARK 465 TYR A 284 REMARK 465 SER B 278 REMARK 465 ILE B 279 REMARK 465 LEU B 280 REMARK 465 PRO B 281 REMARK 465 GLU B 282 REMARK 465 PRO B 283 REMARK 465 TYR B 284 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 622 O HOH A 642 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 202 -67.27 -107.29 REMARK 500 CYS A 216 78.31 -117.28 REMARK 500 SER A 275 133.44 -32.70 REMARK 500 ASN A 286 106.51 -168.00 REMARK 500 ASN A 325 60.95 -116.44 REMARK 500 ASN A 355 27.68 80.87 REMARK 500 ASP B 202 -64.60 -107.16 REMARK 500 SER B 275 103.36 -51.42 REMARK 500 ASN B 325 60.91 -117.04 REMARK 500 ASN B 355 24.86 82.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 276 ASP B 277 -149.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 401 DBREF 6STV A 187 371 UNP E1CIQ3 E1CIQ3_9ADEN 187 371 DBREF 6STV B 187 371 UNP E1CIQ3 E1CIQ3_9ADEN 187 371 SEQADV 6STV LEU A 187 UNP E1CIQ3 ARG 187 CONFLICT SEQADV 6STV LEU B 187 UNP E1CIQ3 ARG 187 CONFLICT SEQRES 1 A 185 LEU THR LEU TRP THR THR LEU ASP PRO SER PRO ASN CYS SEQRES 2 A 185 LYS ILE ASP ILE GLU LYS ASP SER LYS LEU THR LEU VAL SEQRES 3 A 185 LEU THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER SEQRES 4 A 185 LEU ILE ILE VAL ASN GLY LYS PHE LYS ILE LEU ASN ASN SEQRES 5 A 185 LYS THR ASP PRO SER LEU PRO LYS SER PHE ASN ILE LYS SEQRES 6 A 185 LEU LEU PHE ASP GLN ASN GLY VAL LEU LEU GLU ASN SER SEQRES 7 A 185 ASN ILE GLU LYS GLN TYR LEU ASN PHE ARG SER GLY ASP SEQRES 8 A 185 SER ILE LEU PRO GLU PRO TYR LYS ASN ALA ILE GLY PHE SEQRES 9 A 185 MET PRO ASN LEU LEU ALA TYR ALA LYS ALA THR THR ASP SEQRES 10 A 185 GLN SER LYS ILE TYR ALA ARG ASN THR ILE TYR GLY ASN SEQRES 11 A 185 ILE TYR LEU ASP ASN GLN PRO TYR ASN PRO VAL VAL ILE SEQRES 12 A 185 LYS ILE THR PHE ASN ASN GLU ALA ASP SER ALA TYR SER SEQRES 13 A 185 ILE THR PHE ASN TYR SER TRP THR LYS ASP TYR ASP ASN SEQRES 14 A 185 ILE PRO PHE ASP SER THR SER PHE THR PHE SER TYR ILE SEQRES 15 A 185 ALA GLN GLU SEQRES 1 B 185 LEU THR LEU TRP THR THR LEU ASP PRO SER PRO ASN CYS SEQRES 2 B 185 LYS ILE ASP ILE GLU LYS ASP SER LYS LEU THR LEU VAL SEQRES 3 B 185 LEU THR LYS CYS GLY SER GLN ILE LEU ALA ASN VAL SER SEQRES 4 B 185 LEU ILE ILE VAL ASN GLY LYS PHE LYS ILE LEU ASN ASN SEQRES 5 B 185 LYS THR ASP PRO SER LEU PRO LYS SER PHE ASN ILE LYS SEQRES 6 B 185 LEU LEU PHE ASP GLN ASN GLY VAL LEU LEU GLU ASN SER SEQRES 7 B 185 ASN ILE GLU LYS GLN TYR LEU ASN PHE ARG SER GLY ASP SEQRES 8 B 185 SER ILE LEU PRO GLU PRO TYR LYS ASN ALA ILE GLY PHE SEQRES 9 B 185 MET PRO ASN LEU LEU ALA TYR ALA LYS ALA THR THR ASP SEQRES 10 B 185 GLN SER LYS ILE TYR ALA ARG ASN THR ILE TYR GLY ASN SEQRES 11 B 185 ILE TYR LEU ASP ASN GLN PRO TYR ASN PRO VAL VAL ILE SEQRES 12 B 185 LYS ILE THR PHE ASN ASN GLU ALA ASP SER ALA TYR SER SEQRES 13 B 185 ILE THR PHE ASN TYR SER TRP THR LYS ASP TYR ASP ASN SEQRES 14 B 185 ILE PRO PHE ASP SER THR SER PHE THR PHE SER TYR ILE SEQRES 15 B 185 ALA GLN GLU HET PO4 A 401 5 HET GOL A 402 6 HET PO4 B 401 5 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PO4 2(O4 P 3-) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *333(H2 O) HELIX 1 AA1 GLU A 267 LEU A 271 5 5 HELIX 2 AA2 ALA A 287 MET A 291 5 5 HELIX 3 AA3 TYR A 308 ARG A 310 5 3 HELIX 4 AA4 GLU B 267 LEU B 271 5 5 HELIX 5 AA5 ALA B 287 MET B 291 5 5 HELIX 6 AA6 TYR B 308 ARG B 310 5 3 SHEET 1 AA1 5 ASN A 272 PHE A 273 0 SHEET 2 AA1 5 THR A 188 TRP A 190 -1 N TRP A 190 O ASN A 272 SHEET 3 AA1 5 SER A 207 CYS A 216 -1 O LEU A 213 N LEU A 189 SHEET 4 AA1 5 GLN A 219 ILE A 228 -1 O ILE A 227 N LYS A 208 SHEET 5 AA1 5 PHE A 363 ILE A 368 -1 O PHE A 365 N ALA A 222 SHEET 1 AA2 2 ILE A 235 LEU A 236 0 SHEET 2 AA2 2 ILE A 356 PRO A 357 -1 O ILE A 356 N LEU A 236 SHEET 1 AA3 4 SER A 247 PHE A 254 0 SHEET 2 AA3 4 TYR A 341 SER A 348 -1 O TYR A 341 N PHE A 254 SHEET 3 AA3 4 PRO A 326 PHE A 333 -1 N LYS A 330 O ASN A 346 SHEET 4 AA3 4 THR A 312 TYR A 318 -1 N ILE A 313 O ILE A 331 SHEET 1 AA4 5 ASN B 272 PHE B 273 0 SHEET 2 AA4 5 THR B 188 TRP B 190 -1 N TRP B 190 O ASN B 272 SHEET 3 AA4 5 SER B 207 CYS B 216 -1 O LEU B 213 N LEU B 189 SHEET 4 AA4 5 GLN B 219 ILE B 228 -1 O LEU B 221 N THR B 214 SHEET 5 AA4 5 PHE B 363 ILE B 368 -1 O PHE B 365 N ALA B 222 SHEET 1 AA5 2 ILE B 235 LEU B 236 0 SHEET 2 AA5 2 ILE B 356 PRO B 357 -1 O ILE B 356 N LEU B 236 SHEET 1 AA6 4 SER B 247 PHE B 254 0 SHEET 2 AA6 4 TYR B 341 SER B 348 -1 O TYR B 341 N PHE B 254 SHEET 3 AA6 4 PRO B 326 PHE B 333 -1 N LYS B 330 O ASN B 346 SHEET 4 AA6 4 THR B 312 TYR B 318 -1 N ILE B 313 O ILE B 331 SITE 1 AC1 3 ASN A 316 HOH A 508 HOH A 522 SITE 1 AC2 9 ASN A 249 LYS A 251 HOH A 528 HOH A 594 SITE 2 AC2 9 HOH A 599 HOH A 604 ASP B 202 LYS B 232 SITE 3 AC2 9 HOH B 640 SITE 1 AC3 3 ASN B 316 HOH B 515 HOH B 544 CRYST1 104.290 104.290 104.290 90.00 90.00 90.00 P 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009589 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009589 0.00000