HEADER RNA BINDING PROTEIN 12-SEP-19 6STY TITLE HUMAN REXO2 EXONUCLEASE IN COMPLEX WITH RNA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGORIBONUCLEASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B, D, E; COMPND 4 SYNONYM: RNA EXONUCLEASE 2 HOMOLOG,SMALL FRAGMENT NUCLEASE; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(P*AP*UP*C)-3'); COMPND 9 CHAIN: C, F; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: REXO2, SFN, SMFN, CGI-114; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 SUMO; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS 3'-5' EXONUCLEASE IN COMPLEX WITH ITS RNA SUBSTRATE, RNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.MALIK,M.SZEWCZYK,R.SZCZESNY,M.NOWOTNY REVDAT 4 24-JAN-24 6STY 1 LINK REVDAT 3 10-JUN-20 6STY 1 JRNL REVDAT 2 13-MAY-20 6STY 1 JRNL REVDAT 1 29-APR-20 6STY 0 JRNL AUTH M.SZEWCZYK,D.MALIK,L.S.BOROWSKI,S.D.CZARNOMSKA,A.V.KOTRYS, JRNL AUTH 2 K.KLOSOWSKA-KOSICKA,M.NOWOTNY,R.J.SZCZESNY JRNL TITL HUMAN REXO2 CONTROLS SHORT MITOCHONDRIAL RNAS GENERATED BY JRNL TITL 2 MTRNA PROCESSING AND DECAY MACHINERY TO PREVENT ACCUMULATION JRNL TITL 3 OF DOUBLE-STRANDED RNA. JRNL REF NUCLEIC ACIDS RES. V. 48 5572 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32365187 JRNL DOI 10.1093/NAR/GKAA302 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.ZUO,M.P.DEUTSCHER REMARK 1 TITL EXORIBONUCLEASE SUPERFAMILIES: STRUCTURAL ANALYSIS AND REMARK 1 TITL 2 PHYLOGENETIC DISTRIBUTION. REMARK 1 REF NUCLEIC ACIDS RES. V. 29 1017 2001 REMARK 1 REFN ESSN 1362-4962 REMARK 1 PMID 11222749 REMARK 1 DOI 10.1093/NAR/29.5.1017 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 176.47 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1100 - 6.0200 0.95 2534 134 0.2037 0.2466 REMARK 3 2 6.0200 - 4.7800 0.95 2524 133 0.1782 0.2184 REMARK 3 3 4.7800 - 4.1800 0.95 2543 133 0.1790 0.2351 REMARK 3 4 4.1800 - 3.8000 0.95 2518 133 0.1885 0.2577 REMARK 3 5 3.8000 - 3.5200 0.95 2520 133 0.2004 0.2697 REMARK 3 6 3.5200 - 3.3200 0.95 2534 133 0.2185 0.2642 REMARK 3 7 3.3200 - 3.1500 0.95 2516 133 0.2630 0.3539 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.343 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6141 REMARK 3 ANGLE : 0.531 8346 REMARK 3 CHIRALITY : 0.038 939 REMARK 3 PLANARITY : 0.003 1072 REMARK 3 DIHEDRAL : 11.661 4072 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 21 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2498 18.2201 -6.3877 REMARK 3 T TENSOR REMARK 3 T11: 1.3620 T22: 1.0218 REMARK 3 T33: 0.9903 T12: 0.2977 REMARK 3 T13: 0.3097 T23: 0.1348 REMARK 3 L TENSOR REMARK 3 L11: 3.7350 L22: 3.3929 REMARK 3 L33: 4.4434 L12: -1.1986 REMARK 3 L13: -3.8723 L23: 0.1032 REMARK 3 S TENSOR REMARK 3 S11: 0.8549 S12: -0.0724 S13: 1.3136 REMARK 3 S21: 0.2704 S22: 0.7570 S23: 2.0195 REMARK 3 S31: 0.2027 S32: 0.9250 S33: -1.6807 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 28 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2822 -48.1952 -34.8459 REMARK 3 T TENSOR REMARK 3 T11: 0.6330 T22: 0.6216 REMARK 3 T33: 0.3566 T12: -0.1120 REMARK 3 T13: 0.0674 T23: 0.0643 REMARK 3 L TENSOR REMARK 3 L11: 4.2129 L22: 2.9942 REMARK 3 L33: 2.3664 L12: 1.6938 REMARK 3 L13: 2.9703 L23: 1.6560 REMARK 3 S TENSOR REMARK 3 S11: 0.1448 S12: 0.0171 S13: 0.2417 REMARK 3 S21: 0.5300 S22: -0.5865 S23: 0.2652 REMARK 3 S31: 0.8111 S32: 0.0911 S33: 0.3166 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 51 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7550 -38.5449 -20.1973 REMARK 3 T TENSOR REMARK 3 T11: 0.8810 T22: 0.5742 REMARK 3 T33: 0.4132 T12: -0.1040 REMARK 3 T13: 0.1073 T23: 0.0684 REMARK 3 L TENSOR REMARK 3 L11: 2.6870 L22: 2.8452 REMARK 3 L33: 2.9105 L12: 0.7797 REMARK 3 L13: -0.6324 L23: 0.8054 REMARK 3 S TENSOR REMARK 3 S11: 0.3677 S12: -0.1251 S13: 0.2362 REMARK 3 S21: 0.1782 S22: -0.3290 S23: -0.0953 REMARK 3 S31: -0.8020 S32: 0.3291 S33: -0.0256 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 155 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5807 -57.9997 -22.9114 REMARK 3 T TENSOR REMARK 3 T11: 0.4717 T22: 0.6159 REMARK 3 T33: 0.4378 T12: 0.0348 REMARK 3 T13: 0.0121 T23: 0.0795 REMARK 3 L TENSOR REMARK 3 L11: 2.2564 L22: 5.8767 REMARK 3 L33: 5.3768 L12: -0.8949 REMARK 3 L13: -0.7795 L23: -1.3061 REMARK 3 S TENSOR REMARK 3 S11: 0.2487 S12: -0.1258 S13: -0.2342 REMARK 3 S21: 0.0157 S22: -0.4555 S23: -0.4109 REMARK 3 S31: 0.1572 S32: 0.6609 S33: 0.2231 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 34 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6584 -57.6415 -12.3467 REMARK 3 T TENSOR REMARK 3 T11: 0.5373 T22: 0.5240 REMARK 3 T33: 0.4292 T12: -0.1180 REMARK 3 T13: 0.0018 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 9.2067 L22: 7.0074 REMARK 3 L33: 4.4048 L12: -3.9993 REMARK 3 L13: -2.0894 L23: 1.4336 REMARK 3 S TENSOR REMARK 3 S11: 0.4491 S12: 0.4711 S13: -0.1355 REMARK 3 S21: 0.2383 S22: -0.6039 S23: 0.4224 REMARK 3 S31: -0.4296 S32: -0.4374 S33: 0.1472 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 83 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9308 -42.7958 -21.6757 REMARK 3 T TENSOR REMARK 3 T11: 1.1131 T22: 1.2954 REMARK 3 T33: 1.1762 T12: 0.3744 REMARK 3 T13: 0.2119 T23: 0.1856 REMARK 3 L TENSOR REMARK 3 L11: 9.6206 L22: 6.5111 REMARK 3 L33: 4.8661 L12: -4.1413 REMARK 3 L13: 6.6142 L23: -3.3995 REMARK 3 S TENSOR REMARK 3 S11: 0.1268 S12: 0.8494 S13: 1.1288 REMARK 3 S21: -0.1733 S22: -0.2898 S23: 0.2507 REMARK 3 S31: -1.4659 S32: -1.5747 S33: 0.0596 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 104 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.8412 -48.4844 -14.1687 REMARK 3 T TENSOR REMARK 3 T11: 0.6836 T22: 1.0551 REMARK 3 T33: 1.2175 T12: 0.1018 REMARK 3 T13: -0.0322 T23: -0.0581 REMARK 3 L TENSOR REMARK 3 L11: 7.9253 L22: 1.3743 REMARK 3 L33: 6.6012 L12: -1.9014 REMARK 3 L13: 6.5887 L23: -2.5470 REMARK 3 S TENSOR REMARK 3 S11: 0.2572 S12: 0.4923 S13: 0.1551 REMARK 3 S21: -0.2544 S22: 0.0748 S23: 1.4210 REMARK 3 S31: 0.1331 S32: -1.9002 S33: -0.1293 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 117 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.5253 -55.8436 -4.9616 REMARK 3 T TENSOR REMARK 3 T11: 0.6540 T22: 0.6270 REMARK 3 T33: 0.4667 T12: -0.1073 REMARK 3 T13: -0.0128 T23: -0.0503 REMARK 3 L TENSOR REMARK 3 L11: 3.4997 L22: 6.2909 REMARK 3 L33: 6.3240 L12: -3.7430 REMARK 3 L13: -2.8458 L23: 0.0263 REMARK 3 S TENSOR REMARK 3 S11: 0.2251 S12: -0.3518 S13: 0.2896 REMARK 3 S21: 0.4895 S22: -0.1825 S23: 0.1878 REMARK 3 S31: -0.6542 S32: -0.3235 S33: -0.2664 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 144 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6229 -49.4477 -10.0173 REMARK 3 T TENSOR REMARK 3 T11: 0.7859 T22: 0.6806 REMARK 3 T33: 0.5268 T12: -0.0807 REMARK 3 T13: 0.1191 T23: -0.1194 REMARK 3 L TENSOR REMARK 3 L11: 6.3644 L22: 2.5464 REMARK 3 L33: 3.2615 L12: 0.0270 REMARK 3 L13: -4.3943 L23: 0.7559 REMARK 3 S TENSOR REMARK 3 S11: 1.0084 S12: -0.7570 S13: 0.6291 REMARK 3 S21: 0.1536 S22: 0.0862 S23: 0.0521 REMARK 3 S31: -1.5094 S32: 0.3869 S33: -0.9992 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 166 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.1493 -64.1472 -27.0568 REMARK 3 T TENSOR REMARK 3 T11: 0.8491 T22: 0.6765 REMARK 3 T33: 0.4681 T12: -0.0650 REMARK 3 T13: -0.0948 T23: -0.1117 REMARK 3 L TENSOR REMARK 3 L11: 6.1687 L22: 5.9703 REMARK 3 L33: 9.1893 L12: 1.2103 REMARK 3 L13: -2.6934 L23: 0.3411 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: 0.9657 S13: -0.7629 REMARK 3 S21: -1.2612 S22: 0.1628 S23: 0.5526 REMARK 3 S31: 0.8557 S32: -0.9829 S33: -0.1281 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.3439 -50.5905 -24.4134 REMARK 3 T TENSOR REMARK 3 T11: 1.7045 T22: 2.6963 REMARK 3 T33: 1.8060 T12: 0.6319 REMARK 3 T13: 0.2428 T23: -0.4782 REMARK 3 L TENSOR REMARK 3 L11: 2.8700 L22: 6.6845 REMARK 3 L33: 7.9374 L12: 0.7630 REMARK 3 L13: -3.8504 L23: 3.2033 REMARK 3 S TENSOR REMARK 3 S11: -1.2910 S12: -2.8025 S13: 1.0248 REMARK 3 S21: 4.8910 S22: 0.5019 S23: 4.6038 REMARK 3 S31: 0.1049 S32: -2.9054 S33: 0.6973 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1071 -0.3084 -7.5910 REMARK 3 T TENSOR REMARK 3 T11: 0.4504 T22: 0.4446 REMARK 3 T33: 0.3968 T12: 0.0116 REMARK 3 T13: 0.0839 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 2.5947 L22: 0.7555 REMARK 3 L33: 8.6156 L12: 0.1509 REMARK 3 L13: 1.6819 L23: -1.0654 REMARK 3 S TENSOR REMARK 3 S11: 0.0627 S12: -0.3610 S13: -0.1099 REMARK 3 S21: -0.2409 S22: -0.2820 S23: -0.3050 REMARK 3 S31: 0.4762 S32: -0.6928 S33: 0.1754 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7571 -2.0496 12.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.5690 T22: 0.6021 REMARK 3 T33: 0.6762 T12: 0.0502 REMARK 3 T13: -0.1836 T23: -0.0848 REMARK 3 L TENSOR REMARK 3 L11: 8.6577 L22: 9.7018 REMARK 3 L33: 8.8764 L12: 2.5245 REMARK 3 L13: -1.8802 L23: 0.0667 REMARK 3 S TENSOR REMARK 3 S11: 0.0584 S12: 0.3360 S13: -0.7495 REMARK 3 S21: 1.1258 S22: 0.1793 S23: -0.7462 REMARK 3 S31: 0.2175 S32: 0.8950 S33: -0.1808 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0007 3.5766 -9.5447 REMARK 3 T TENSOR REMARK 3 T11: 0.5703 T22: 0.6468 REMARK 3 T33: 0.4671 T12: -0.1420 REMARK 3 T13: 0.0658 T23: -0.1518 REMARK 3 L TENSOR REMARK 3 L11: 5.0263 L22: 1.9975 REMARK 3 L33: 4.4541 L12: 0.5838 REMARK 3 L13: 2.1183 L23: -0.5032 REMARK 3 S TENSOR REMARK 3 S11: -0.2908 S12: 0.6688 S13: 0.3665 REMARK 3 S21: -0.0494 S22: 0.0956 S23: -0.3412 REMARK 3 S31: -0.4251 S32: 0.4394 S33: 0.1976 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0856 8.7461 -2.6467 REMARK 3 T TENSOR REMARK 3 T11: 0.4686 T22: 0.4428 REMARK 3 T33: 0.4443 T12: -0.0300 REMARK 3 T13: 0.0389 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.1254 L22: 6.4327 REMARK 3 L33: 8.8128 L12: 2.6101 REMARK 3 L13: 2.4916 L23: 1.7802 REMARK 3 S TENSOR REMARK 3 S11: 0.0867 S12: 0.0304 S13: 0.1577 REMARK 3 S21: -0.3010 S22: 0.3504 S23: -0.3915 REMARK 3 S31: -0.5070 S32: 0.3722 S33: -0.3950 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.5828 -8.8731 0.6418 REMARK 3 T TENSOR REMARK 3 T11: 0.7014 T22: 0.4731 REMARK 3 T33: 0.4166 T12: 0.0108 REMARK 3 T13: 0.0525 T23: -0.0158 REMARK 3 L TENSOR REMARK 3 L11: 7.7528 L22: 2.8596 REMARK 3 L33: 3.9721 L12: -0.5604 REMARK 3 L13: -1.2739 L23: 1.4483 REMARK 3 S TENSOR REMARK 3 S11: -0.3949 S12: -0.6182 S13: -0.6952 REMARK 3 S21: 0.1580 S22: 0.0755 S23: 0.0212 REMARK 3 S31: 0.7785 S32: -0.1608 S33: 0.2508 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 215 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7022 -13.6370 -14.9727 REMARK 3 T TENSOR REMARK 3 T11: 0.7994 T22: 1.0089 REMARK 3 T33: 0.4198 T12: -0.2031 REMARK 3 T13: 0.1256 T23: -0.1010 REMARK 3 L TENSOR REMARK 3 L11: 4.2903 L22: 2.7378 REMARK 3 L33: 4.0044 L12: -2.8574 REMARK 3 L13: -3.7261 L23: 3.2535 REMARK 3 S TENSOR REMARK 3 S11: 0.3447 S12: 0.8161 S13: 0.5311 REMARK 3 S21: 0.0739 S22: -0.7953 S23: 0.4771 REMARK 3 S31: 0.6618 S32: -0.6683 S33: 0.2245 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.5176 12.2637 8.2354 REMARK 3 T TENSOR REMARK 3 T11: 0.6255 T22: 0.6436 REMARK 3 T33: 0.3486 T12: 0.1671 REMARK 3 T13: -0.0409 T23: -0.0880 REMARK 3 L TENSOR REMARK 3 L11: 4.0592 L22: 7.2130 REMARK 3 L33: 2.9067 L12: 2.5728 REMARK 3 L13: -0.2759 L23: -0.1584 REMARK 3 S TENSOR REMARK 3 S11: -0.3973 S12: 0.0087 S13: -0.0445 REMARK 3 S21: -0.2525 S22: 0.3707 S23: -0.2653 REMARK 3 S31: -0.4040 S32: -0.5610 S33: 0.0362 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 83 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3082 30.7801 -1.6483 REMARK 3 T TENSOR REMARK 3 T11: 1.3984 T22: 0.8236 REMARK 3 T33: 0.7874 T12: -0.0155 REMARK 3 T13: 0.0921 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.7463 L22: 4.7527 REMARK 3 L33: 3.2068 L12: 0.4652 REMARK 3 L13: -2.2139 L23: -2.9384 REMARK 3 S TENSOR REMARK 3 S11: 0.2359 S12: 0.3181 S13: 1.3354 REMARK 3 S21: -1.2141 S22: -0.0942 S23: -1.0005 REMARK 3 S31: -0.1268 S32: -0.0228 S33: -0.0275 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 105 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3374 19.6251 12.2692 REMARK 3 T TENSOR REMARK 3 T11: 0.8209 T22: 0.6567 REMARK 3 T33: 0.4586 T12: 0.1951 REMARK 3 T13: -0.1171 T23: -0.1159 REMARK 3 L TENSOR REMARK 3 L11: 2.6523 L22: 7.8975 REMARK 3 L33: 1.8662 L12: 1.5108 REMARK 3 L13: -1.0518 L23: -1.6862 REMARK 3 S TENSOR REMARK 3 S11: -0.0041 S12: -0.2627 S13: 0.5286 REMARK 3 S21: 0.6643 S22: -0.0700 S23: 0.0807 REMARK 3 S31: -0.8977 S32: -0.3190 S33: 0.0832 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 144 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2509 7.6848 -1.6467 REMARK 3 T TENSOR REMARK 3 T11: 0.6084 T22: 0.5379 REMARK 3 T33: 0.3438 T12: 0.0757 REMARK 3 T13: -0.0461 T23: -0.0018 REMARK 3 L TENSOR REMARK 3 L11: 3.5784 L22: 3.3721 REMARK 3 L33: 6.3046 L12: 0.3568 REMARK 3 L13: 0.0782 L23: 2.9985 REMARK 3 S TENSOR REMARK 3 S11: 0.0661 S12: 0.3706 S13: 0.3062 REMARK 3 S21: -0.0834 S22: -0.0144 S23: -0.0506 REMARK 3 S31: -0.1927 S32: -0.6594 S33: -0.0713 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6STY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89440 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18669 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 48.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5CY4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SODIUM TARTRATE REMARK 280 TRIHYDRATE AND 20% PEG3350, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.51533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.25767 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 GLY A 3 REMARK 465 GLY A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 ARG A 9 REMARK 465 LEU A 10 REMARK 465 LEU A 11 REMARK 465 ARG A 12 REMARK 465 GLY A 13 REMARK 465 VAL A 14 REMARK 465 GLY A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 HIS A 18 REMARK 465 GLY A 19 REMARK 465 ARG A 20 REMARK 465 PHE A 21 REMARK 465 GLY A 22 REMARK 465 ALA A 23 REMARK 465 ARG A 24 REMARK 465 GLY A 25 REMARK 465 VAL A 26 REMARK 465 ARG A 27 REMARK 465 ALA A 192 REMARK 465 LYS A 222 REMARK 465 LYS A 223 REMARK 465 ASN A 229 REMARK 465 GLY A 230 REMARK 465 GLU A 231 REMARK 465 ASN A 232 REMARK 465 GLU A 233 REMARK 465 LYS A 234 REMARK 465 THR A 235 REMARK 465 VAL A 236 REMARK 465 SER A 237 REMARK 465 MET B 1 REMARK 465 LEU B 2 REMARK 465 GLY B 3 REMARK 465 GLY B 4 REMARK 465 SER B 5 REMARK 465 LEU B 6 REMARK 465 GLY B 7 REMARK 465 SER B 8 REMARK 465 ARG B 9 REMARK 465 LEU B 10 REMARK 465 LEU B 11 REMARK 465 ARG B 12 REMARK 465 GLY B 13 REMARK 465 VAL B 14 REMARK 465 GLY B 15 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 HIS B 18 REMARK 465 GLY B 19 REMARK 465 ARG B 20 REMARK 465 PHE B 21 REMARK 465 GLY B 22 REMARK 465 ALA B 23 REMARK 465 ARG B 24 REMARK 465 GLY B 25 REMARK 465 VAL B 26 REMARK 465 ARG B 27 REMARK 465 GLU B 28 REMARK 465 GLY B 29 REMARK 465 ASP B 220 REMARK 465 GLU B 221 REMARK 465 LYS B 222 REMARK 465 LYS B 223 REMARK 465 ARG B 224 REMARK 465 LYS B 225 REMARK 465 ILE B 226 REMARK 465 ILE B 227 REMARK 465 GLU B 228 REMARK 465 ASN B 229 REMARK 465 GLY B 230 REMARK 465 GLU B 231 REMARK 465 ASN B 232 REMARK 465 GLU B 233 REMARK 465 LYS B 234 REMARK 465 THR B 235 REMARK 465 VAL B 236 REMARK 465 SER B 237 REMARK 465 C C -8 REMARK 465 C C -7 REMARK 465 C C -6 REMARK 465 G C -5 REMARK 465 G C -4 REMARK 465 C C -3 REMARK 465 U C -2 REMARK 465 C C -1 REMARK 465 MET D 1 REMARK 465 LEU D 2 REMARK 465 GLY D 3 REMARK 465 GLY D 4 REMARK 465 SER D 5 REMARK 465 LEU D 6 REMARK 465 GLY D 7 REMARK 465 SER D 8 REMARK 465 ARG D 9 REMARK 465 LEU D 10 REMARK 465 LEU D 11 REMARK 465 ARG D 12 REMARK 465 GLY D 13 REMARK 465 VAL D 14 REMARK 465 GLY D 15 REMARK 465 GLY D 16 REMARK 465 SER D 17 REMARK 465 HIS D 18 REMARK 465 GLY D 19 REMARK 465 ARG D 20 REMARK 465 PHE D 21 REMARK 465 GLY D 22 REMARK 465 ALA D 23 REMARK 465 ARG D 24 REMARK 465 GLY D 25 REMARK 465 VAL D 26 REMARK 465 ARG D 27 REMARK 465 GLU D 221 REMARK 465 LYS D 222 REMARK 465 LYS D 223 REMARK 465 GLU D 228 REMARK 465 ASN D 229 REMARK 465 GLY D 230 REMARK 465 GLU D 231 REMARK 465 ASN D 232 REMARK 465 GLU D 233 REMARK 465 LYS D 234 REMARK 465 THR D 235 REMARK 465 VAL D 236 REMARK 465 SER D 237 REMARK 465 MET E 1 REMARK 465 LEU E 2 REMARK 465 GLY E 3 REMARK 465 GLY E 4 REMARK 465 SER E 5 REMARK 465 LEU E 6 REMARK 465 GLY E 7 REMARK 465 SER E 8 REMARK 465 ARG E 9 REMARK 465 LEU E 10 REMARK 465 LEU E 11 REMARK 465 ARG E 12 REMARK 465 GLY E 13 REMARK 465 VAL E 14 REMARK 465 GLY E 15 REMARK 465 GLY E 16 REMARK 465 SER E 17 REMARK 465 HIS E 18 REMARK 465 GLY E 19 REMARK 465 ARG E 20 REMARK 465 PHE E 21 REMARK 465 GLY E 22 REMARK 465 ALA E 23 REMARK 465 ARG E 24 REMARK 465 GLY E 25 REMARK 465 VAL E 26 REMARK 465 ARG E 27 REMARK 465 GLU E 28 REMARK 465 GLY E 29 REMARK 465 GLY E 30 REMARK 465 ALA E 31 REMARK 465 ALA E 32 REMARK 465 MET E 33 REMARK 465 ALA E 192 REMARK 465 SER E 193 REMARK 465 HIS E 194 REMARK 465 ARG E 195 REMARK 465 ILE E 219 REMARK 465 ASP E 220 REMARK 465 GLU E 221 REMARK 465 LYS E 222 REMARK 465 LYS E 223 REMARK 465 ARG E 224 REMARK 465 LYS E 225 REMARK 465 ILE E 226 REMARK 465 ILE E 227 REMARK 465 GLU E 228 REMARK 465 ASN E 229 REMARK 465 GLY E 230 REMARK 465 GLU E 231 REMARK 465 ASN E 232 REMARK 465 GLU E 233 REMARK 465 LYS E 234 REMARK 465 THR E 235 REMARK 465 VAL E 236 REMARK 465 SER E 237 REMARK 465 C F -5 REMARK 465 C F -4 REMARK 465 C F -3 REMARK 465 G F -2 REMARK 465 G F -1 REMARK 465 C F 0 REMARK 465 A F 3 REMARK 465 U F 4 REMARK 465 C F 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 55 CG1 CG2 CD1 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 ASP A 91 CG OD1 OD2 REMARK 470 LYS A 98 CG CD CE NZ REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 LYS A 111 CG CD CE NZ REMARK 470 LYS A 160 CG CD CE NZ REMARK 470 LYS A 173 CE NZ REMARK 470 LYS A 189 CD CE NZ REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 SER A 193 OG REMARK 470 LYS A 217 CG CD CE NZ REMARK 470 ARG A 224 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 57 CG CD CE NZ REMARK 470 ASP B 58 CG OD1 OD2 REMARK 470 ILE B 61 CD1 REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 GLU B 99 CG CD OE1 OE2 REMARK 470 LYS B 103 CG CD CE NZ REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 ARG B 129 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 174 OE1 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 LYS B 189 CG CD CE NZ REMARK 470 SER B 193 OG REMARK 470 HIS B 194 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 205 CG CD CE NZ REMARK 470 ILE B 214 CD1 REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 LYS B 218 CG CD CE NZ REMARK 470 ILE B 219 CG1 CG2 CD1 REMARK 470 A C 0 C8 N7 C5 C6 N6 N1 C2 REMARK 470 A C 0 N3 C4 REMARK 470 GLU D 28 CG CD OE1 OE2 REMARK 470 GLU D 37 CG CD OE1 OE2 REMARK 470 ILE D 55 CG1 CG2 CD1 REMARK 470 LYS D 57 CG CD CE NZ REMARK 470 LYS D 84 CG CD CE NZ REMARK 470 LEU D 89 CG CD1 CD2 REMARK 470 LYS D 98 CG CD CE NZ REMARK 470 GLU D 99 CG CD OE1 OE2 REMARK 470 LYS D 103 CG CD CE NZ REMARK 470 SER D 104 OG REMARK 470 LYS D 111 CG CD CE NZ REMARK 470 GLU D 112 CG CD OE1 OE2 REMARK 470 LYS D 149 CG CD CE NZ REMARK 470 LYS D 160 CE NZ REMARK 470 LYS D 173 CE NZ REMARK 470 LYS D 189 CG CD CE NZ REMARK 470 LYS D 190 CG CD CE NZ REMARK 470 LYS D 205 CG CD CE NZ REMARK 470 LYS D 216 CE NZ REMARK 470 ILE D 219 CG1 CG2 CD1 REMARK 470 LYS D 225 CG CD CE NZ REMARK 470 GLU E 37 CG CD OE1 OE2 REMARK 470 LEU E 53 CG CD1 CD2 REMARK 470 LYS E 57 CG CD CE NZ REMARK 470 ASP E 58 CG OD1 OD2 REMARK 470 LEU E 66 CG CD1 CD2 REMARK 470 ILE E 82 CD1 REMARK 470 ILE E 83 CD1 REMARK 470 LYS E 84 NZ REMARK 470 GLU E 88 CG CD OE1 OE2 REMARK 470 MET E 93 CG SD CE REMARK 470 ASP E 95 CG OD1 OD2 REMARK 470 LYS E 98 CG CD CE NZ REMARK 470 GLU E 99 CG CD OE1 OE2 REMARK 470 HIS E 100 CG ND1 CD2 CE1 NE2 REMARK 470 LYS E 103 CG CD CE NZ REMARK 470 SER E 104 OG REMARK 470 LYS E 108 CG CD CE NZ REMARK 470 LYS E 111 CE NZ REMARK 470 ILE E 115 CD1 REMARK 470 GLU E 146 CG CD OE1 OE2 REMARK 470 LYS E 153 CG CD CE NZ REMARK 470 LYS E 160 CG CD CE NZ REMARK 470 SER E 170 OG REMARK 470 GLU E 182 CG CD OE1 OE2 REMARK 470 PHE E 186 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS E 190 CG CD CE NZ REMARK 470 SER E 201 OG REMARK 470 LYS E 205 CG CD CE NZ REMARK 470 LYS E 217 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS D 216 OH TYR E 180 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 37 OG SER A 94 2554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 57 -34.30 -130.58 REMARK 500 LEU A 66 143.78 -171.66 REMARK 500 ILE B 61 -33.64 -130.60 REMARK 500 ASP B 69 -168.17 -79.58 REMARK 500 ASP B 71 33.59 -91.09 REMARK 500 ALA B 191 12.88 -69.10 REMARK 500 LEU D 53 25.54 -145.28 REMARK 500 LYS D 57 -42.39 -130.52 REMARK 500 LEU D 66 142.62 -170.63 REMARK 500 ASP D 69 -158.43 -79.53 REMARK 500 GLN E 41 30.10 -97.51 REMARK 500 GLN E 59 -153.27 -109.87 REMARK 500 ASP E 69 -166.46 -79.43 REMARK 500 LEU E 72 -5.81 66.84 REMARK 500 ALA E 76 132.69 -170.63 REMARK 500 ASN E 213 -71.53 -110.47 REMARK 500 LYS E 217 151.50 76.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 47 OD1 REMARK 620 2 ASP B 47 OD2 54.6 REMARK 620 3 U C 1 O3' 124.3 155.0 REMARK 620 4 C C 2 OP1 90.5 98.8 56.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 DBREF 6STY A 1 237 UNP Q9Y3B8 ORN_HUMAN 1 237 DBREF 6STY B 1 237 UNP Q9Y3B8 ORN_HUMAN 1 237 DBREF 6STY C -8 2 PDB 6STY 6STY -8 2 DBREF 6STY D 1 237 UNP Q9Y3B8 ORN_HUMAN 1 237 DBREF 6STY E 1 237 UNP Q9Y3B8 ORN_HUMAN 1 237 DBREF 6STY F -5 5 PDB 6STY 6STY -5 5 SEQRES 1 A 237 MET LEU GLY GLY SER LEU GLY SER ARG LEU LEU ARG GLY SEQRES 2 A 237 VAL GLY GLY SER HIS GLY ARG PHE GLY ALA ARG GLY VAL SEQRES 3 A 237 ARG GLU GLY GLY ALA ALA MET ALA ALA GLY GLU SER MET SEQRES 4 A 237 ALA GLN ARG MET VAL TRP VAL ASP LEU GLU MET THR GLY SEQRES 5 A 237 LEU ASP ILE GLU LYS ASP GLN ILE ILE GLU MET ALA CYS SEQRES 6 A 237 LEU ILE THR ASP SER ASP LEU ASN ILE LEU ALA GLU GLY SEQRES 7 A 237 PRO ASN LEU ILE ILE LYS GLN PRO ASP GLU LEU LEU ASP SEQRES 8 A 237 SER MET SER ASP TRP CYS LYS GLU HIS HIS GLY LYS SER SEQRES 9 A 237 GLY LEU THR LYS ALA VAL LYS GLU SER THR ILE THR LEU SEQRES 10 A 237 GLN GLN ALA GLU TYR GLU PHE LEU SER PHE VAL ARG GLN SEQRES 11 A 237 GLN THR PRO PRO GLY LEU CYS PRO LEU ALA GLY ASN SER SEQRES 12 A 237 VAL HIS GLU ASP LYS LYS PHE LEU ASP LYS TYR MET PRO SEQRES 13 A 237 GLN PHE MET LYS HIS LEU HIS TYR ARG ILE ILE ASP VAL SEQRES 14 A 237 SER THR VAL LYS GLU LEU CYS ARG ARG TRP TYR PRO GLU SEQRES 15 A 237 GLU TYR GLU PHE ALA PRO LYS LYS ALA ALA SER HIS ARG SEQRES 16 A 237 ALA LEU ASP ASP ILE SER GLU SER ILE LYS GLU LEU GLN SEQRES 17 A 237 PHE TYR ARG ASN ASN ILE PHE LYS LYS LYS ILE ASP GLU SEQRES 18 A 237 LYS LYS ARG LYS ILE ILE GLU ASN GLY GLU ASN GLU LYS SEQRES 19 A 237 THR VAL SER SEQRES 1 B 237 MET LEU GLY GLY SER LEU GLY SER ARG LEU LEU ARG GLY SEQRES 2 B 237 VAL GLY GLY SER HIS GLY ARG PHE GLY ALA ARG GLY VAL SEQRES 3 B 237 ARG GLU GLY GLY ALA ALA MET ALA ALA GLY GLU SER MET SEQRES 4 B 237 ALA GLN ARG MET VAL TRP VAL ASP LEU GLU MET THR GLY SEQRES 5 B 237 LEU ASP ILE GLU LYS ASP GLN ILE ILE GLU MET ALA CYS SEQRES 6 B 237 LEU ILE THR ASP SER ASP LEU ASN ILE LEU ALA GLU GLY SEQRES 7 B 237 PRO ASN LEU ILE ILE LYS GLN PRO ASP GLU LEU LEU ASP SEQRES 8 B 237 SER MET SER ASP TRP CYS LYS GLU HIS HIS GLY LYS SER SEQRES 9 B 237 GLY LEU THR LYS ALA VAL LYS GLU SER THR ILE THR LEU SEQRES 10 B 237 GLN GLN ALA GLU TYR GLU PHE LEU SER PHE VAL ARG GLN SEQRES 11 B 237 GLN THR PRO PRO GLY LEU CYS PRO LEU ALA GLY ASN SER SEQRES 12 B 237 VAL HIS GLU ASP LYS LYS PHE LEU ASP LYS TYR MET PRO SEQRES 13 B 237 GLN PHE MET LYS HIS LEU HIS TYR ARG ILE ILE ASP VAL SEQRES 14 B 237 SER THR VAL LYS GLU LEU CYS ARG ARG TRP TYR PRO GLU SEQRES 15 B 237 GLU TYR GLU PHE ALA PRO LYS LYS ALA ALA SER HIS ARG SEQRES 16 B 237 ALA LEU ASP ASP ILE SER GLU SER ILE LYS GLU LEU GLN SEQRES 17 B 237 PHE TYR ARG ASN ASN ILE PHE LYS LYS LYS ILE ASP GLU SEQRES 18 B 237 LYS LYS ARG LYS ILE ILE GLU ASN GLY GLU ASN GLU LYS SEQRES 19 B 237 THR VAL SER SEQRES 1 C 11 C C C G G C U C A U C SEQRES 1 D 237 MET LEU GLY GLY SER LEU GLY SER ARG LEU LEU ARG GLY SEQRES 2 D 237 VAL GLY GLY SER HIS GLY ARG PHE GLY ALA ARG GLY VAL SEQRES 3 D 237 ARG GLU GLY GLY ALA ALA MET ALA ALA GLY GLU SER MET SEQRES 4 D 237 ALA GLN ARG MET VAL TRP VAL ASP LEU GLU MET THR GLY SEQRES 5 D 237 LEU ASP ILE GLU LYS ASP GLN ILE ILE GLU MET ALA CYS SEQRES 6 D 237 LEU ILE THR ASP SER ASP LEU ASN ILE LEU ALA GLU GLY SEQRES 7 D 237 PRO ASN LEU ILE ILE LYS GLN PRO ASP GLU LEU LEU ASP SEQRES 8 D 237 SER MET SER ASP TRP CYS LYS GLU HIS HIS GLY LYS SER SEQRES 9 D 237 GLY LEU THR LYS ALA VAL LYS GLU SER THR ILE THR LEU SEQRES 10 D 237 GLN GLN ALA GLU TYR GLU PHE LEU SER PHE VAL ARG GLN SEQRES 11 D 237 GLN THR PRO PRO GLY LEU CYS PRO LEU ALA GLY ASN SER SEQRES 12 D 237 VAL HIS GLU ASP LYS LYS PHE LEU ASP LYS TYR MET PRO SEQRES 13 D 237 GLN PHE MET LYS HIS LEU HIS TYR ARG ILE ILE ASP VAL SEQRES 14 D 237 SER THR VAL LYS GLU LEU CYS ARG ARG TRP TYR PRO GLU SEQRES 15 D 237 GLU TYR GLU PHE ALA PRO LYS LYS ALA ALA SER HIS ARG SEQRES 16 D 237 ALA LEU ASP ASP ILE SER GLU SER ILE LYS GLU LEU GLN SEQRES 17 D 237 PHE TYR ARG ASN ASN ILE PHE LYS LYS LYS ILE ASP GLU SEQRES 18 D 237 LYS LYS ARG LYS ILE ILE GLU ASN GLY GLU ASN GLU LYS SEQRES 19 D 237 THR VAL SER SEQRES 1 E 237 MET LEU GLY GLY SER LEU GLY SER ARG LEU LEU ARG GLY SEQRES 2 E 237 VAL GLY GLY SER HIS GLY ARG PHE GLY ALA ARG GLY VAL SEQRES 3 E 237 ARG GLU GLY GLY ALA ALA MET ALA ALA GLY GLU SER MET SEQRES 4 E 237 ALA GLN ARG MET VAL TRP VAL ASP LEU GLU MET THR GLY SEQRES 5 E 237 LEU ASP ILE GLU LYS ASP GLN ILE ILE GLU MET ALA CYS SEQRES 6 E 237 LEU ILE THR ASP SER ASP LEU ASN ILE LEU ALA GLU GLY SEQRES 7 E 237 PRO ASN LEU ILE ILE LYS GLN PRO ASP GLU LEU LEU ASP SEQRES 8 E 237 SER MET SER ASP TRP CYS LYS GLU HIS HIS GLY LYS SER SEQRES 9 E 237 GLY LEU THR LYS ALA VAL LYS GLU SER THR ILE THR LEU SEQRES 10 E 237 GLN GLN ALA GLU TYR GLU PHE LEU SER PHE VAL ARG GLN SEQRES 11 E 237 GLN THR PRO PRO GLY LEU CYS PRO LEU ALA GLY ASN SER SEQRES 12 E 237 VAL HIS GLU ASP LYS LYS PHE LEU ASP LYS TYR MET PRO SEQRES 13 E 237 GLN PHE MET LYS HIS LEU HIS TYR ARG ILE ILE ASP VAL SEQRES 14 E 237 SER THR VAL LYS GLU LEU CYS ARG ARG TRP TYR PRO GLU SEQRES 15 E 237 GLU TYR GLU PHE ALA PRO LYS LYS ALA ALA SER HIS ARG SEQRES 16 E 237 ALA LEU ASP ASP ILE SER GLU SER ILE LYS GLU LEU GLN SEQRES 17 E 237 PHE TYR ARG ASN ASN ILE PHE LYS LYS LYS ILE ASP GLU SEQRES 18 E 237 LYS LYS ARG LYS ILE ILE GLU ASN GLY GLU ASN GLU LYS SEQRES 19 E 237 THR VAL SER SEQRES 1 F 11 C C C G G C U C A U C HET CA B 301 1 HETNAM CA CALCIUM ION FORMUL 7 CA CA 2+ FORMUL 8 HOH *9(H2 O) HELIX 1 AA1 GLU A 28 ALA A 40 1 13 HELIX 2 AA2 PRO A 86 SER A 92 1 7 HELIX 3 AA3 SER A 94 SER A 104 1 11 HELIX 4 AA4 GLY A 105 GLU A 112 1 8 HELIX 5 AA5 THR A 116 GLN A 130 1 15 HELIX 6 AA6 VAL A 144 MET A 155 1 12 HELIX 7 AA7 MET A 155 HIS A 161 1 7 HELIX 8 AA8 VAL A 169 TYR A 180 1 12 HELIX 9 AA9 TYR A 180 GLU A 185 1 6 HELIX 10 AB1 ARG A 195 ILE A 214 1 20 HELIX 11 AB2 ALA B 31 GLN B 41 1 11 HELIX 12 AB3 PRO B 86 ASP B 91 1 6 HELIX 13 AB4 SER B 94 SER B 104 1 11 HELIX 14 AB5 GLY B 105 GLU B 112 1 8 HELIX 15 AB6 THR B 116 GLN B 130 1 15 HELIX 16 AB7 SER B 143 MET B 155 1 13 HELIX 17 AB8 MET B 155 HIS B 161 1 7 HELIX 18 AB9 VAL B 169 TYR B 180 1 12 HELIX 19 AC1 TYR B 180 PHE B 186 1 7 HELIX 20 AC2 ARG B 195 PHE B 215 1 21 HELIX 21 AC3 GLY D 29 ALA D 40 1 12 HELIX 22 AC4 PRO D 86 MET D 93 1 8 HELIX 23 AC5 SER D 94 SER D 104 1 11 HELIX 24 AC6 GLY D 105 GLU D 112 1 8 HELIX 25 AC7 THR D 116 GLN D 130 1 15 HELIX 26 AC8 VAL D 144 MET D 155 1 12 HELIX 27 AC9 MET D 155 HIS D 161 1 7 HELIX 28 AD1 VAL D 169 TYR D 180 1 12 HELIX 29 AD2 TYR D 180 GLU D 185 1 6 HELIX 30 AD3 ARG D 195 PHE D 215 1 21 HELIX 31 AD4 ALA E 35 GLN E 41 1 7 HELIX 32 AD5 PRO E 86 MET E 93 1 8 HELIX 33 AD6 SER E 94 SER E 104 1 11 HELIX 34 AD7 GLY E 105 GLU E 112 1 8 HELIX 35 AD8 THR E 116 THR E 132 1 17 HELIX 36 AD9 SER E 143 MET E 155 1 13 HELIX 37 AE1 MET E 155 HIS E 161 1 7 HELIX 38 AE2 VAL E 169 TYR E 180 1 12 HELIX 39 AE3 TYR E 180 GLU E 185 1 6 HELIX 40 AE4 LEU E 197 ILE E 214 1 18 SHEET 1 AA1 5 ILE A 74 ILE A 82 0 SHEET 2 AA1 5 ILE A 60 THR A 68 -1 N ILE A 67 O LEU A 75 SHEET 3 AA1 5 MET A 43 MET A 50 -1 N TRP A 45 O LEU A 66 SHEET 4 AA1 5 LEU A 139 GLY A 141 1 O ALA A 140 N VAL A 44 SHEET 5 AA1 5 ILE A 166 ASP A 168 1 O ILE A 167 N LEU A 139 SHEET 1 AA2 5 ILE B 74 ILE B 82 0 SHEET 2 AA2 5 ILE B 60 THR B 68 -1 N MET B 63 O LEU B 81 SHEET 3 AA2 5 MET B 43 MET B 50 -1 N TRP B 45 O LEU B 66 SHEET 4 AA2 5 LEU B 139 GLY B 141 1 O ALA B 140 N VAL B 44 SHEET 5 AA2 5 ILE B 166 ASP B 168 1 O ILE B 167 N LEU B 139 SHEET 1 AA3 5 ILE D 74 ILE D 82 0 SHEET 2 AA3 5 ILE D 60 THR D 68 -1 N ILE D 67 O ALA D 76 SHEET 3 AA3 5 MET D 43 MET D 50 -1 N GLU D 49 O ILE D 61 SHEET 4 AA3 5 CYS D 137 GLY D 141 1 O ALA D 140 N VAL D 44 SHEET 5 AA3 5 LEU D 162 ASP D 168 1 O HIS D 163 N CYS D 137 SHEET 1 AA4 5 ILE E 74 ILE E 82 0 SHEET 2 AA4 5 ILE E 60 THR E 68 -1 N ILE E 67 O LEU E 75 SHEET 3 AA4 5 MET E 43 MET E 50 -1 N MET E 43 O THR E 68 SHEET 4 AA4 5 CYS E 137 GLY E 141 1 O ALA E 140 N VAL E 44 SHEET 5 AA4 5 LEU E 162 ASP E 168 1 O ILE E 167 N LEU E 139 LINK OD1 ASP B 47 CA CA B 301 1555 1555 2.33 LINK OD2 ASP B 47 CA CA B 301 1555 1555 2.46 LINK CA CA B 301 O3' U C 1 1555 1555 2.80 LINK CA CA B 301 OP1 C C 2 1555 1555 2.40 SITE 1 AC1 3 ASP B 47 U C 1 C C 2 CRYST1 88.303 88.303 123.773 90.00 90.00 120.00 P 32 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011325 0.006538 0.000000 0.00000 SCALE2 0.000000 0.013077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008079 0.00000