HEADER ANTIMICROBIAL PROTEIN 16-SEP-19 6SUN TITLE AMICOUMACIN KINASE HAMIN IN COMPLEX WITH AMP-PNP, CA2+ AND AMI COMPND MOL_ID: 1; COMPND 2 MOLECULE: APH DOMAIN-CONTAINING PROTEIN, AMICOUMACIN KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.230; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PUMILUS; SOURCE 3 ORGANISM_TAXID: 1408; SOURCE 4 GENE: BW16_03450; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIMICROBIAL PROTEIN, KINASE, AMICOUMACIN EXPDTA X-RAY DIFFRACTION AUTHOR G.P.BOURENKOV,Y.A.MOKRUSHINA,S.S.TEREKHOV,I.V.SMIRNOV,A.G.GABIBOV, AUTHOR 2 S.ALTMAN REVDAT 2 15-MAY-24 6SUN 1 LINK REVDAT 1 22-JUL-20 6SUN 0 JRNL AUTH S.S.TEREKHOV,Y.A.MOKRUSHINA,A.S.NAZAROV,A.ZLOBIN,A.ZALEVSKY, JRNL AUTH 2 G.BOURENKOV,A.GOLOVIN,A.BELOGUROV JR.,I.A.OSTERMAN, JRNL AUTH 3 A.A.KULIKOVA,V.A.MITKEVICH,H.J.LOU,B.E.TURK,M.WILMANNS, JRNL AUTH 4 I.V.SMIRNOV,S.ALTMAN,A.G.GABIBOV JRNL TITL A KINASE BIOSCAVENGER PROVIDES ANTIBIOTIC RESISTANCE BY JRNL TITL 2 EXTREMELY TIGHT SUBSTRATE BINDING. JRNL REF SCI ADV V. 6 Z9861 2020 JRNL REFN ESSN 2375-2548 JRNL PMID 32637600 JRNL DOI 10.1126/SCIADV.AAZ9861 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 81731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4362 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5879 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 305 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2763 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 353 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.14000 REMARK 3 B22 (A**2) : 1.27000 REMARK 3 B33 (A**2) : 0.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.75000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.033 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.880 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2959 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2730 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4032 ; 1.524 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6287 ; 1.076 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 352 ; 5.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;35.543 ;23.907 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 503 ;13.288 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.316 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 425 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3336 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 734 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5689 ; 5.536 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 224 ;23.699 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5732 ;11.484 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6SUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : BE CRLS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88781 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 2.77000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH6.5 0.2 M NAOAC 27-29% REMARK 280 (W/V) PEG 2000MME 2 MM AMIA 2.2 MM AMP-PNP 20 MM CA2+, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.32000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.23000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.32000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.23000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 ARG A 59 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 100 CG CD OE1 NE2 REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 470 LEU A 272 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 13.57 -143.20 REMARK 500 THR A 55 -164.61 -127.15 REMARK 500 ASP A 203 44.97 -147.98 REMARK 500 THR A 303 57.92 -142.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 853 DISTANCE = 5.99 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 208 OD1 REMARK 620 2 ASP A 220 OD2 81.3 REMARK 620 3 ANP A 403 O1G 144.5 68.6 REMARK 620 4 ANP A 403 O3G 153.0 125.0 57.8 REMARK 620 5 ANP A 403 O2A 104.3 89.3 94.1 83.4 REMARK 620 6 HOH A 635 O 72.6 152.1 139.3 82.1 87.9 REMARK 620 7 HOH A 661 O 87.4 86.7 72.9 88.7 167.0 101.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD1 REMARK 620 2 ASP A 220 OD2 52.4 REMARK 620 3 ASP A 222 OD1 72.0 110.0 REMARK 620 4 ASP A 222 OD2 73.7 125.9 48.1 REMARK 620 5 ASP A 222 OD2 74.7 126.0 54.5 6.4 REMARK 620 6 ANP A 403 O1G 118.5 70.3 158.9 149.4 143.3 REMARK 620 7 ANP A 403 O2B 91.6 99.1 123.7 75.7 69.3 76.1 REMARK 620 8 HOH A 501 O 86.5 79.0 56.6 104.6 111.1 104.0 177.9 REMARK 620 9 HOH A 789 O 150.0 148.2 78.4 83.1 84.4 91.1 101.1 81.1 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UAM A 404 DBREF 6SUN A 1 335 UNP W8QKP2 W8QKP2_BACPU 1 335 SEQADV 6SUN SER A 62 UNP W8QKP2 ARG 62 CONFLICT SEQADV 6SUN ALA A 89 UNP W8QKP2 THR 89 CONFLICT SEQADV 6SUN ILE A 233 UNP W8QKP2 MET 233 CONFLICT SEQRES 1 A 335 MET HIS LYS GLU VAL LYS ALA ARG TYR ASP GLU GLN MET SEQRES 2 A 335 VAL LEU LYS LYS ALA ALA LEU LEU TYR HIS PHE GLN PRO SEQRES 3 A 335 GLU GLN VAL THR PHE LEU ALA ASP ALA GLU ASN TYR VAL SEQRES 4 A 335 TYR GLU TYR THR ASP GLU LYS GLY SER SER TYR ILE LEU SEQRES 5 A 335 LYS ILE THR HIS THR ILE ARG ARG SER SER THR TYR ILE SEQRES 6 A 335 LEU GLY GLU MET ASP TRP ILE ARG TYR LEU SER GLN HIS SEQRES 7 A 335 GLY ILE SER VAL ALA LYS PRO VAL LEU SER ALA ARG GLY SEQRES 8 A 335 LYS ASP VAL GLU ALA ILE PRO ASP GLN ALA GLY GLY ALA SEQRES 9 A 335 PHE LEU LEU ARG VAL TYR GLU LYS ALA PRO GLY ARG LYS SEQRES 10 A 335 VAL THR GLU ALA ASP TRP ASN GLY GLN LEU PHE GLN ALA SEQRES 11 A 335 LEU GLY ALA TYR THR GLY ARG MET HIS GLN THR THR LYS SEQRES 12 A 335 GLN TYR GLN VAL LYS ASP PRO ARG TYR LYS ARG GLN GLU SEQRES 13 A 335 TRP TYR GLU GLU GLU GLN LEU LYS LEU GLU THR TYR ILE SEQRES 14 A 335 PRO SER ASP GLN THR VAL VAL LEU GLN ARG LYS ASP GLU SEQRES 15 A 335 LEU MET GLN LYS LEU HIS GLN LEU ARG ILE SER LYS ASP SEQRES 16 A 335 VAL TYR GLY LEU VAL HIS ALA ASP LEU HIS HIS GLY ASN SEQRES 17 A 335 PHE HIS TYR HIS GLN GLY GLU ILE ILE ALA PHE ASP PHE SEQRES 18 A 335 ASP ASP CYS GLY TYR HIS TRP PHE ILE ASN ASP ILE SER SEQRES 19 A 335 ILE LEU LEU TYR ASN VAL LEU TRP TYR PRO VAL ILE PRO SEQRES 20 A 335 TYR GLU ASP LYS ALA GLU PHE THR GLY GLU PHE MET SER SEQRES 21 A 335 HIS PHE LEU LYS GLY TYR ARG GLN GLU ASN GLU LEU ASP SEQRES 22 A 335 ASP ALA TRP LEU ALA THR ILE PRO ASP PHE LEU MET LEU SEQRES 23 A 335 ARG HIS MET LEU ILE TYR GLY LEU LEU HIS GLN ALA PHE SEQRES 24 A 335 ASP LEU ARG THR LEU SER ALA ASP GLU SER ALA MET LEU SEQRES 25 A 335 ALA ARG PHE ARG LYS GLU ILE GLU ASP LYS THR PRO ILE SEQRES 26 A 335 THR PRO PHE ASP PHE HIS GLN LEU THR THR HET CA A 401 1 HET CA A 402 1 HET ANP A 403 31 HET UAM A 404 30 HETNAM CA CALCIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM UAM AMICOUMACIN A FORMUL 2 CA 2(CA 2+) FORMUL 4 ANP C10 H17 N6 O12 P3 FORMUL 5 UAM C20 H29 N3 O7 FORMUL 6 HOH *353(H2 O) HELIX 1 AA1 HIS A 2 TYR A 9 1 8 HELIX 2 AA2 ASP A 10 HIS A 23 1 14 HELIX 3 AA3 GLN A 25 VAL A 29 5 5 HELIX 4 AA4 SER A 61 HIS A 78 1 18 HELIX 5 AA5 THR A 119 TRP A 123 5 5 HELIX 6 AA6 ASN A 124 LYS A 143 1 20 HELIX 7 AA7 ASP A 149 LYS A 153 5 5 HELIX 8 AA8 GLU A 156 TYR A 168 5 13 HELIX 9 AA9 GLN A 173 HIS A 188 1 16 HELIX 10 AB1 PHE A 229 TYR A 243 1 15 HELIX 11 AB2 ASP A 250 GLN A 268 1 19 HELIX 12 AB3 ASP A 273 ALA A 278 5 6 HELIX 13 AB4 THR A 279 PHE A 299 1 21 HELIX 14 AB5 SER A 305 LYS A 322 1 18 HELIX 15 AB6 ASP A 329 THR A 334 5 6 SHEET 1 AA1 5 THR A 30 ALA A 33 0 SHEET 2 AA1 5 TYR A 38 THR A 43 -1 O VAL A 39 N LEU A 32 SHEET 3 AA1 5 SER A 49 HIS A 56 -1 O ILE A 54 N TYR A 38 SHEET 4 AA1 5 ALA A 104 GLU A 111 -1 O TYR A 110 N ILE A 51 SHEET 5 AA1 5 PRO A 85 VAL A 86 -1 N VAL A 86 O VAL A 109 SHEET 1 AA2 5 THR A 30 ALA A 33 0 SHEET 2 AA2 5 TYR A 38 THR A 43 -1 O VAL A 39 N LEU A 32 SHEET 3 AA2 5 SER A 49 HIS A 56 -1 O ILE A 54 N TYR A 38 SHEET 4 AA2 5 ALA A 104 GLU A 111 -1 O TYR A 110 N ILE A 51 SHEET 5 AA2 5 GLU A 95 PRO A 98 -1 N GLU A 95 O LEU A 107 SHEET 1 AA3 2 TYR A 197 VAL A 200 0 SHEET 2 AA3 2 GLY A 225 TRP A 228 -1 O GLY A 225 N VAL A 200 SHEET 1 AA4 2 PHE A 209 HIS A 212 0 SHEET 2 AA4 2 GLU A 215 ALA A 218 -1 O GLU A 215 N HIS A 212 LINK OD1 ASN A 208 CA CA A 401 1555 1555 2.40 LINK OD2 ASP A 220 CA CA A 401 1555 1555 2.29 LINK OD1 ASP A 220 CA CA A 402 1555 1555 2.47 LINK OD2 ASP A 220 CA CA A 402 1555 1555 2.52 LINK OD1AASP A 222 CA CA A 402 1555 1555 2.75 LINK OD2AASP A 222 CA CA A 402 1555 1555 2.61 LINK OD2BASP A 222 CA CA A 402 1555 1555 2.53 LINK CA CA A 401 O1G ANP A 403 1555 1555 2.60 LINK CA CA A 401 O3G ANP A 403 1555 1555 2.40 LINK CA CA A 401 O2A ANP A 403 1555 1555 2.30 LINK CA CA A 401 O HOH A 635 1555 1555 2.37 LINK CA CA A 401 O HOH A 661 1555 1555 2.45 LINK CA CA A 402 O1G ANP A 403 1555 1555 2.28 LINK CA CA A 402 O2B ANP A 403 1555 1555 2.32 LINK CA CA A 402 O HOH A 501 1555 1555 2.37 LINK CA CA A 402 O HOH A 789 1555 1555 2.28 SITE 1 AC1 5 ASN A 208 ASP A 220 ANP A 403 HOH A 635 SITE 2 AC1 5 HOH A 661 SITE 1 AC2 5 ASP A 220 ASP A 222 ANP A 403 HOH A 501 SITE 2 AC2 5 HOH A 789 SITE 1 AC3 30 LEU A 32 GLU A 36 ASN A 37 VAL A 39 SITE 2 AC3 30 ILE A 51 LYS A 53 ALA A 83 GLU A 111 SITE 3 AC3 30 LYS A 112 ALA A 113 LYS A 117 GLY A 207 SITE 4 AC3 30 HIS A 210 PHE A 219 ASP A 220 ASP A 222 SITE 5 AC3 30 CA A 401 CA A 402 HOH A 504 HOH A 523 SITE 6 AC3 30 HOH A 560 HOH A 585 HOH A 592 HOH A 614 SITE 7 AC3 30 HOH A 628 HOH A 632 HOH A 661 HOH A 668 SITE 8 AC3 30 HOH A 688 HOH A 768 SITE 1 AC4 20 GLU A 160 GLN A 162 ASP A 203 HIS A 205 SITE 2 AC4 20 HIS A 206 GLY A 207 ASP A 223 ASN A 239 SITE 3 AC4 20 TRP A 242 TYR A 243 LEU A 290 ILE A 291 SITE 4 AC4 20 LEU A 294 HOH A 569 HOH A 597 HOH A 626 SITE 5 AC4 20 HOH A 668 HOH A 688 HOH A 723 HOH A 774 CRYST1 126.640 54.460 64.630 90.00 113.28 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007896 0.000000 0.003397 0.00000 SCALE2 0.000000 0.018362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016844 0.00000